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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063361 ID=TCONS_00063361|Name=TCONS_00063361|organism=Clytia hemisphaerica|type=transcript|length=1099bp
TAATCGAACTGGTACTGCTTACACTTTCTTCACCCAAAACAATGGTAAAA
ATGCTGCAGAGCTTGTATCAGTCATGCAAGAAGCAAACCAAGTAGTCCCA
CCCAAGCTTCAGGATCTAGCTAAAGGACATTATGGTGGACGAAAGAGAGT
GAGATACAGTTCTGAAAGTGACGATCATGGTGGCAAACGTTTCGCTGGAG
GATCTCGAAGCGGAGGAGGTTCACGAAGTGGTGGCTACAGCGGTGGTGGT
GGTGGCTCCCGCAGTGGAGGATACGGAGGTGGTGGCTCCTCCAGAGGATA
TGGTGGAAGCAGTGGAGGAAGCTCCAGAGGCGGAAGCAGCCGTGGTGGGA
GCTACGGTGGCGGAAGTAGTTATCAAAATGGAGGTGGAAGTAGCGGCGGT
GGCCAAAATTGGAATAACGGAGGTTACAATCAACAACAACCTTCTCAACC
GCCACAGCAATTACAAGGTGGTAgtggcggcggcggcggtggtGCTGGTA
ACGCCGACCAATGGGCACAATATCACAAACAAATGGCAGAGTGGCAACAA
AAGAACCAACAATGGCAACAGTGGCAGTCAACACAGGGTGGCTCTGGACA
CTAAAACTTTATACCGATAAGAGACATTTAATTTATTTAGCGTATATGTC
GTTAAGGTGGTCATCACGCACTAGCAAAAAATCAAGGTTTTAAATAGAAA
AGCCTTGAATATGGTCGAAGTTTACAGACCTCATTCGATTGTCTATTTTA
CTACTGAATATCAGCCGATTTTCCTATTGCTATTTATTAATTGAGTAAGC
TTGTCTCCTCATCTTTATGCACTTCATAAACTTGTAGTATTAATAAAATC
TGAATTATCATTAATTTTGACGATCGTAGCTTAgcatgttattatttttt
aaacaagaGTAAACGGATTTTATTTTACTGTATCTTCTTGTCGTGTTGCT
ATTTTGTGTCTTTAGTTGCAACACGGGTTATTTGTCACGtaaatgtatat
aaaaactGATAACGGTAAAAGATACaagtgtttttatttgttttaaaaga
tcatgtatttatttttctgtttaGTCCATTTTATCCTTGTCCCTCGAGC Run BLAST on NCBI transcript from alignment at scaffold_386:193741..195307- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063361 ID=TCONS_00063361|Name=TCONS_00063361|organism=Clytia hemisphaerica|type=transcript|length=1567bp|location=Sequence derived from alignment at scaffold_386:193741..195307- (Clytia hemisphaerica)
TAATCGAACTGGTACTGCTTACACTTTCTTCACCCAAAACAATGGTAAAA
ATGCTGCAGAGCTTGTATCAGTCATGCAAGAAGCAAACCAAGTAGTCCCA
CCCAAGCTTCAGGATCTAGCTAAAGGACATTATGGTGGACGAAAGAGAGG
TATGTCCATGGAAGGCCTCATTAAGAATTGAAGTCGATACAATTTCAAAC
TGGGATTTTGAAGATTTCTTGTTCTATTCAAACGCATGTTATAATCTGCT
TTGTATTTCCGATTTGAGAAGCCATCGTATAATTCTCATCTGTCAGTTAA
AGCTTTTATTGTCTTAGCATTTCGTCAAAACTTAGTCTTGAAACGATAGA
AAACTCTTCTTTTCTTTCAGTGAGATACAGTTCTGAAAGTGACGATCATG
GTGGCAAACGTTTCGCTGGAGGATCTCGAAGCGGAGGAGGTTCACGAAGT
GGTGGCTACAGCGGTGGTGGTGGTGGCTCCCGCAGTGGAGGATACGGAGG
TGGTGGCTCCTCCAGAGGATATGGTGGAAGCAGTGGAGGAAGCTCCAGAG
GCGGAAGCAGCCGTGGTGGGAGCTACGGTGGCGGAAGTAGTTATCAAAAT
GGAGGTGGAAGTAGCGGCGGTGGCCAAAATTGGAATAACGGAGGTAAGTT
TCTAAACTTAAAATTTAAAACAACGCCAAATAAACTAAGTGAACACACAA
AAGCAAGTGATATTTTTACAGAGAAATAGAGCCTTGTGTTATCTAAGATG
ATAAGCGCAGATGTTTCCCCAACAAGTAATCAAGTGTCCCAAAATATCAA
AAATAACTTTGTTCTTAGGTTTTGCCCAATTTTGAATCTTCATTTTAAAA
ATGGACCCGATTGAAAGAATTATTCTTTGACGTTCATCAGGTTACAATCA
ACAACAACCTTCTCAACCGCCACAGCAATTACAAGGTGGTAGTGGCGGCG
GCGGCGGTGGTGCTGGTAACGCCGACCAATGGGCACAATATCACAAACAA
ATGGCAGAGTGGCAACAAAAGAACCAACAATGGCAACAGTGGCAGTCAAC
ACAGGGTGGCTCTGGACACTAAAACTTTATACCGATAAGAGACATTTAAT
TTATTTAGCGTATATGTCGTTAAGGTGGTCATCACGCACTAGCAAAAAAT
CAAGGTTTTAAATAGAAAAGCCTTGAATATGGTCGAAGTTTACAGACCTC
ATTCGATTGTCTATTTTACTACTGAATATCAGCCGATTTTCCTATTGCTA
TTTATTAATTGAGTAAGCTTGTCTCCTCATCTTTATGCACTTCATAAACT
TGTAGTATTAATAAAATCTGAATTATCATTAATTTTGACGATCGTAGCTT
AGCATGTTATTATTTTTTAAACAAGAGTAAACGGATTTTATTTTACTGTA
TCTTCTTGTCGTGTTGCTATTTTGTGTCTTTAGTTGCAACACGGGTTATT
TGTCACGTAAATGTATATAAAAACTGATAACGGTAAAAGATACAAGTGTT
TTTATTTGTTTTAAAAGATCATGTATTTATTTTTCTGTTTAGTCCATTTT
ATCCTTGTCCCTCGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063361-exon-scaffold_386-1575043694:195159..195307 | TCONS_00063361-exon-scaffold_386-1575043694:195159..195307 | Clytia hemisphaerica | exon |
| TCONS_00063361-exon-scaffold_386-1575043694:194665..194937 | TCONS_00063361-exon-scaffold_386-1575043694:194665..194937 | Clytia hemisphaerica | exon |
| TCONS_00063361-exon-scaffold_386-1575043694:193741..194417 | TCONS_00063361-exon-scaffold_386-1575043694:193741..194417 | Clytia hemisphaerica | exon |
| TCONS_00063361-exon-scaffold_386-1510915933:195159..195307 | TCONS_00063361-exon-scaffold_386-1510915933:195159..195307 | Clytia hemisphaerica | exon |
| TCONS_00063361-exon-scaffold_386-1510915933:194665..194937 | TCONS_00063361-exon-scaffold_386-1510915933:194665..194937 | Clytia hemisphaerica | exon |
| TCONS_00063361-exon-scaffold_386-1510915933:193741..194417 | TCONS_00063361-exon-scaffold_386-1510915933:193741..194417 | Clytia hemisphaerica | exon |
| TCONS_00063361-exon-scaffold_386-1491911889:195159..195307 | TCONS_00063361-exon-scaffold_386-1491911889:195159..195307 | Clytia hemisphaerica | exon |
| TCONS_00063361-exon-scaffold_386-1491911889:194665..194937 | TCONS_00063361-exon-scaffold_386-1491911889:194665..194937 | Clytia hemisphaerica | exon |
| TCONS_00063361-exon-scaffold_386-1491911889:193741..194417 | TCONS_00063361-exon-scaffold_386-1491911889:193741..194417 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_386 | supercontig | scaffold_386:193741..195307 - |
Blast
The following BLAST results are available for this feature:
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