Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063375 ID=TCONS_00063375|Name=TCONS_00063375|organism=Clytia hemisphaerica|type=transcript|length=849bp CTGCCATTATCAAAGCAAATGAGGAAAATGAAAACCTGAAGGAGCAAGTT CGCATCTTGAATCAGAGTAATCAAGGACTACAGCAACAACTCCAACAGCA ACAACTTCAACAGCAACAACCACAGCagcaaccacaacaacaacagcaac cgCCACAACAACCGCCACAAATGGTTGAATTATCTCCAGGCACTGGAGTG ATGGTCATGCATGAAACCCTTTGTGTTGCTCTGTTGAAGCTTCTTGCAAA TGATTGCCTTCCTTATTTGATTAGAAGATTCTTTACCCATCAAACACAGA CACGTCTGACTGTGGAGGAGGAGGAGACCGACACTCACACCATAATTCCT CCTCATATTAAGCATGCTATTTTCCaattttgtcTTGTTAATTGTCAAGA CAAGTTGGAACGTACAAAGAAGGGAGTCCAACCTCAATTGGTAAAATGTA CACTGCCAAGATTAAAGGTCTTTTGCACCAGGACCTTTCAAATGGCAAGG ACCTATctgaaaaaaagcaaaagtcTGCCAACCAGGCATGAGTCCGGGAG ATATTAGATAATGTTTCTTGAAATAATTGCGGTTCGCTCGCAACAACAGT TTTACACTGctccatatttcttttcttttgtatcACATTTAATTTGTTAC TATCTTGACACAATTAACTTGACACTGTGGTACAAGAactctactttaat gggataaattttcgcggggattaaatttcgcggttgagctcatccgcaaa atttttagatttcgcggggattaattttcgcggatggcactattgggggc attattttctcgattttgtgacttttactgtcaaatcatgcatattggN Run BLAST on NCBI protein sequence of TCONS_00063375-protein >TCONS_00063375-protein ID=TCONS_00063375-protein|Name=TCONS_00063375-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
AIIKANEENENLKEQVRILNQSNQGLQQQLQQQQLQQQQPQQQPQQQQQP PQQPPQMVELSPGTGVMVMHETLCVALLKLLANDCLPYLIRRFFTHQTQT RLTVEEEETDTHTIIPPHIKHAIFQFCLVNCQDKLERTKKGVQPQLVKCT LPRLKVFCTRTFQMARTYLKKSKSLPTRHESGRY Run BLAST on NCBI transcript from alignment at scaffold_387:15128..16618- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063375 ID=TCONS_00063375|Name=TCONS_00063375|organism=Clytia hemisphaerica|type=transcript|length=1491bp|location=Sequence derived from alignment at scaffold_387:15128..16618- (Clytia hemisphaerica) CTGCCATTATCAAAGCAAATGAGGAAAATGAAAACCTGAAGGAGCAAGTT
CGCATCTTGAATCAGAGTGTAAGTAGTAGAAATATACCTTAGATCTTTTA
CATAAGGTTCAATTGTCTACTGAAAGTCGACCAGATATTTAAATGTACTT
TAATGGGACATGCTATTATAAACCTATTGTCAATTTAGAATCAAGGACTA
CAGCAACAACTCCAACAGCAACAACTTCAACAGCAACAACCACAGCAGCA
ACCACAACAACAACAGCAACCGCCACAACAACCGCCACAAATGGTTGAAT
TATCTCCAGGCACTGGAGTGATGGTCATGCATGAAACCCTTTGTGTTGCT
CTGTTGAAGCTTCTTGCAAATGATTGCCTTCCTTATTTGATTAGAAGGTT
ACTACTTTACTTTGCTTAAATTGCTGTATGGATATTATACATCTGTCAAT
AAAAAAGTCTTGCAGATTTTAATAAATTAAAAATCTTTGTAATTTAAGCC
TATTACTAAAAAATGTTCTTGATTACTCATTAAAGCCATTTAATTGCATT
GGGAATAATTTATAATAATTTTTATATACAGTTTGGAATGTGACTGCTTT
TTTAACGGAAACAGTCTACTTTTTTTATCTTAAGATTCTTTACCCATCAA
ACACAGACACGTCTGACTGTGGAGGAGGAGGAGACCGACACTCACACCAT
AATTCCTCCTCATATTAAGCATGCTATTTTCCGTAAGTTGCTTTTTGTCT
CTACTAACTCTTGGTAATCATTTGTTTGTTGGCAATTATTGTGAATTTTC
TTGGTATCTAAAAGGCACTTTCGCTTCAAGATGATTTTTGAAGTACTTTA
GGAGAAGAAACTTTTGTGGGAAGAAATATTCCCAAAATATTCGCATGTCA
CAAAAGAAAACTTTCGTACTTTGGACATTTCGCAAAAGTTTCTTTTCCTA
ACGTATGTAACATTTTCTGCATTTTAACTCATTCACAAAGTTTAATAACC
AAATTATTTTTTTTCAGAATTTTGTCTTGTTAATTGTCAAGACAAGTTGG
AACGTACAAAGAAGGGAGTCCAACCTCAATTGGTAAAATGTACACTGCCA
AGATTAAAGGTCTTTTGCACCAGGACCTTTCAAATGGCAAGGACCTATCT
GAAAAAAAGCAAAAGTCTGCCAACCAGGCATGAGTCCGGGAGATATTAGA
TAATGTTTCTTGAAATAATTGCGGTTCGCTCGCAACAACAGTTTTACACT
GCTCCATATTTCTTTTCTTTTGTATCACATTTAATTTGTTACTATCTTGA
CACAATTAACTTGACACTGTGGTACAAGAACTCTACTTTAATGGGATAAA
TTTTCGCGGGGATTAAATTTCGCGGTTGAGCTCATCCGCAAAATTTTTAG
ATTTCGCGGGGATTAATTTTCGCGGATGGCACTATTGGGGGCATTATTTT
CTCGATTTTGTGACTTTTACTGTCAAATCATGCATATTGGN Coding sequence (CDS) from alignment at scaffold_387:15128..16618- >TCONS_00063375 ID=TCONS_00063375|Name=TCONS_00063375|organism=Clytia hemisphaerica|type=CDS|length=2220bp|location=Sequence derived from alignment at scaffold_387:15128..16618- (Clytia hemisphaerica) AATTTTGTCTTGTTAATTGTCAAGACAAGTTGGAACGTACAAAGAAGGGA GTCCAACCTCAATTGGTAAAATGTACACTGCCAAGATTAAAGGTCTTTTG CACCAGGACCTTTCAAATGGCAAGGACCTATCTGAAAAAAAGCAAAAGTC TGCCAACCAGGCATGAGTCCGGGAGATATTAGATTCTTTACCCATCAAAC ACAGACACGTCTGACTGTGGAGGAGGAGGAGACCGACACTCACACCATAA TTCCTCCTCATATTAAGCATGCTATTTTCCAATCAAGGACTACAGCAACA ACTCCAACAGCAACAACTTCAACAGCAACAACCACAGCAGCAACCACAAC AACAACAGCAACCGCCACAACAACCGCCACAAATGGTTGAATTATCTCCA GGCACTGGAGTGATGGTCATGCATGAAACCCTTTGTGTTGCTCTGTTGAA GCTTCTTGCAAATGATTGCCTTCCTTATTTGATTAGAAGGCCATTATCAA AGCAAATGAGGAAAATGAAAACCTGAAGGAGCAAGTTCGCATCTTGAATC AGAGTAATTTTGTCTTGTTAATTGTCAAGACAAGTTGGAACGTACAAAGA AGGGAGTCCAACCTCAATTGGTAAAATGTACACTGCCAAGATTAAAGGTC TTTTGCACCAGGACCTTTCAAATGGCAAGGACCTATCTGAAAAAAAGCAA AAGTCTGCCAACCAGGCATGAGTCCGGGAGATATTAGATTCTTTACCCAT CAAACACAGACACGTCTGACTGTGGAGGAGGAGGAGACCGACACTCACAC CATAATTCCTCCTCATATTAAGCATGCTATTTTCCAATCAAGGACTACAG CAACAACTCCAACAGCAACAACTTCAACAGCAACAACCACAGCAGCAACC ACAACAACAACAGCAACCGCCACAACAACCGCCACAAATGGTTGAATTAT CTCCAGGCACTGGAGTGATGGTCATGCATGAAACCCTTTGTGTTGCTCTG TTGAAGCTTCTTGCAAATGATTGCCTTCCTTATTTGATTAGAAGGCCATT ATCAAAGCAAATGAGGAAAATGAAAACCTGAAGGAGCAAGTTCGCATCTT GAATCAGAGTAATTTTGTCTTGTTAATTGTCAAGACAAGTTGGAACGTAC AAAGAAGGGAGTCCAACCTCAATTGGTAAAATGTACACTGCCAAGATTAA AGGTCTTTTGCACCAGGACCTTTCAAATGGCAAGGACCTATCTGAAAAAA AGCAAAAGTCTGCCAACCAGGCATGAGTCCGGGAGATATTAGATTCTTTA CCCATCAAACACAGACACGTCTGACTGTGGAGGAGGAGGAGACCGACACT CACACCATAATTCCTCCTCATATTAAGCATGCTATTTTCCAATCAAGGAC TACAGCAACAACTCCAACAGCAACAACTTCAACAGCAACAACCACAGCAG CAACCACAACAACAACAGCAACCGCCACAACAACCGCCACAAATGGTTGA ATTATCTCCAGGCACTGGAGTGATGGTCATGCATGAAACCCTTTGTGTTG CTCTGTTGAAGCTTCTTGCAAATGATTGCCTTCCTTATTTGATTAGAAGG CCATTATCAAAGCAAATGAGGAAAATGAAAACCTGAAGGAGCAAGTTCGC ATCTTGAATCAGAGTAATTTTGTCTTGTTAATTGTCAAGACAAGTTGGAA CGTACAAAGAAGGGAGTCCAACCTCAATTGGTAAAATGTACACTGCCAAG ATTAAAGGTCTTTTGCACCAGGACCTTTCAAATGGCAAGGACCTATCTGA AAAAAAGCAAAAGTCTGCCAACCAGGCATGAGTCCGGGAGATATTAGATT CTTTACCCATCAAACACAGACACGTCTGACTGTGGAGGAGGAGGAGACCG ACACTCACACCATAATTCCTCCTCATATTAAGCATGCTATTTTCCAATCA AGGACTACAGCAACAACTCCAACAGCAACAACTTCAACAGCAACAACCAC AGCAGCAACCACAACAACAACAGCAACCGCCACAACAACCGCCACAAATG GTTGAATTATCTCCAGGCACTGGAGTGATGGTCATGCATGAAACCCTTTG TGTTGCTCTGTTGAAGCTTCTTGCAAATGATTGCCTTCCTTATTTGATTA GAAGGCCATTATCAAAGCAAATGAGGAAAATGAAAACCTGAAGGAGCAAG TTCGCATCTTGAATCAGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00063375-exon-scaffold_387-1575043694:16551..16618 | TCONS_00063375-exon-scaffold_387-1575043694:16551..16618 | Clytia hemisphaerica | exon |
TCONS_00063375-exon-scaffold_387-1575043694:16222..16430 | TCONS_00063375-exon-scaffold_387-1575043694:16222..16430 | Clytia hemisphaerica | exon |
TCONS_00063375-exon-scaffold_387-1575043694:15887..15984 | TCONS_00063375-exon-scaffold_387-1575043694:15887..15984 | Clytia hemisphaerica | exon |
TCONS_00063375-exon-scaffold_387-1575043694:15128..15601 | TCONS_00063375-exon-scaffold_387-1575043694:15128..15601 | Clytia hemisphaerica | exon |
TCONS_00063375-exon-scaffold_387-1510915933:16551..16618 | TCONS_00063375-exon-scaffold_387-1510915933:16551..16618 | Clytia hemisphaerica | exon |
TCONS_00063375-exon-scaffold_387-1510915933:16222..16430 | TCONS_00063375-exon-scaffold_387-1510915933:16222..16430 | Clytia hemisphaerica | exon |
TCONS_00063375-exon-scaffold_387-1510915933:15887..15984 | TCONS_00063375-exon-scaffold_387-1510915933:15887..15984 | Clytia hemisphaerica | exon |
TCONS_00063375-exon-scaffold_387-1510915933:15128..15601 | TCONS_00063375-exon-scaffold_387-1510915933:15128..15601 | Clytia hemisphaerica | exon |
TCONS_00063375-exon-scaffold_387-1491911889:16551..16618 | TCONS_00063375-exon-scaffold_387-1491911889:16551..16618 | Clytia hemisphaerica | exon |
TCONS_00063375-exon-scaffold_387-1491911889:16222..16430 | TCONS_00063375-exon-scaffold_387-1491911889:16222..16430 | Clytia hemisphaerica | exon |
TCONS_00063375-exon-scaffold_387-1491911889:15887..15984 | TCONS_00063375-exon-scaffold_387-1491911889:15887..15984 | Clytia hemisphaerica | exon |
TCONS_00063375-exon-scaffold_387-1491911889:15128..15601 | TCONS_00063375-exon-scaffold_387-1491911889:15128..15601 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_387 | supercontig | scaffold_387:15128..16618 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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