TCONS_00063388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063388
Unique NameTCONS_00063388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063388 ID=TCONS_00063388|Name=TCONS_00063388|organism=Clytia hemisphaerica|type=transcript|length=276bp
ATCTAATTGATGGATACACAGTCGTAAACCACACCAATACTGAGAACAAT
ACAGGACGTGGTATCGTCATCCTAGGACATACCAGTGTAGAACACCTTAC
AGTTGACATTGAATGTCCTGTAGCACTGGAGGAGGCGTGCATCATTGAAG
TACGTCTGGCTGGAAAAGATATGCTTGCTTTGCATGCGTCTACCGCAGTC
CAACGAATCAATCAAACTCTGGAGAAAATAATGCCAATCTTAACCAGCTC
TTACGAATTATATCAGAAGATAAGAG
Run BLAST on NCBI

transcript from alignment at scaffold_387:106027..106302

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063388 ID=TCONS_00063388|Name=TCONS_00063388|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at scaffold_387:106027..106302 (Clytia hemisphaerica)
CTCTTATCTTCTGATATAATTCGTAAGAGCTGGTTAAGATTGGCATTATT TTCTCCAGAGTTTGATTGATTCGTTGGACTGCGGTAGACGCATGCAAAGC AAGCATATCTTTTCCAGCCAGACGTACTTCAATGATGCACGCCTCCTCCA GTGCTACAGGACATTCAATGTCAACTGTAAGGTGTTCTACACTGGTATGT CCTAGGATGACGATACCACGTCCTGTATTGTTCTCAGTATTGGTGTGGTT TACGACTGTGTATCCATCAATTAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039722XLOC_039722Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063388-exon-scaffold_387-1491911889:106027..106302TCONS_00063388-exon-scaffold_387-1491911889:106027..106302Clytia hemisphaericaexon
TCONS_00063388-exon-scaffold_387-1510915933:106027..106302TCONS_00063388-exon-scaffold_387-1510915933:106027..106302Clytia hemisphaericaexon
TCONS_00063388-exon-scaffold_387-1575043694:106027..106302TCONS_00063388-exon-scaffold_387-1575043694:106027..106302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_387supercontigscaffold_387:106027..106302 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (6.48253 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 1.89318 3.71701 2.10816 0.703176 1.66698 0.670379 1.2552 0 1.6328 1.58483 2.43088 2.77429 6.48253 1.3614 2.22421 2.74004 0.401208 2.21716 0 1.51244 1.50742 1.19572 1.00445 1.67951 2.99784 0 0.763049 0.991453 0.58965
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
ATCTAATTGATGGATACACAGTCGTAAACCACACCAATACTGAGAACAATACAGGACGTGGTATCGTCATCCTAGGACATACCAGTGTAGAACACCTTACAGTTGACATTGAATGTCCTGTAGCACTGGAGGAGGCGTGCATCATTGAAGTACGTCTGGCTGGAAAAGATATGCTTGCTTTGCATGCGTCTACCGCAGTCCAACGAATCAATCAAACTCTGGAGAAAATAATGCCAATCTTAACCAGCTCTTACGAATTATATCAGAAGATAAGAG20406080100120140160180200220240260Sequence
Match NameE-valueIdentityDescription
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