TCONS_00063390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063390
Unique NameTCONS_00063390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063390 ID=TCONS_00063390|Name=TCONS_00063390|organism=Clytia hemisphaerica|type=transcript|length=342bp
TGCTAAGGTACTATCCACAAAGGTTCGCCCTTGAACTTGAAGTCATCAAT
GAAACGCCTTGCTTTGCTAGGGCATTATCATCAGAAGTTCGtcttgaact
tgagggaatcatcAGATGTTCACCCTACATCAAATCATCAACTGTTCGAC
GGTCATCTTCACAGTTCACCACGAATTTTGGTAACTATTACCACCGTGTT
GTACATCATGAGCTGAATAGTCCGATTGATAGACTGAATGAACTCTTGGT
TCTTCCCCTTTTGGGTGGGAGTGTTTtggataatgtgcttataattGAAT
TGTTTTGGTTGTGACGTATGAGCTCGATAATGACAAGATGAT
Run BLAST on NCBI

protein sequence of TCONS_00063390-protein

>TCONS_00063390-protein ID=TCONS_00063390-protein|Name=TCONS_00063390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
LRYYPQRFALELEVINETPCFARALSSEVRLELEGIIRCSPYIKSSTVRR
SSSQFTTNFGNYYHRVVHHELNSPIDRLNELLVLPLLGGSVLDNVLIIEL
FWL
Run BLAST on NCBI

transcript from alignment at scaffold_388:17156..17653-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063390 ID=TCONS_00063390|Name=TCONS_00063390|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at scaffold_388:17156..17653- (Clytia hemisphaerica)
TGCTAAGGTACTATCCACAAAGGTTCGCCCTTGAACTTGAAGTCATCAAT
GAAACGCCTTGCTTTGCTAGGGCACTATCATCAGAAGTTCGCCCCTGAAC
TTTGAAGCTACCACCAATGAAACAAGACCCTATTGGGGTACCAATTGTTC
GCCTTGTTCCTACCGAAGTGCTATCACTAGAAGTTCATTGAACGTGACGC
AATCATCAGCCGTTCGCCTGAAACCAGGCATTATCATCAGAAGTTCGTCT
TGAACTTGAGGGAATCATCAGATGTTCACCCTACATCAAATCATCAACTG
TTCGACGGTCATCTTCACAGTTCACCACGAATTTTGGTAACTATTACCAC
CGTGTTGTACATCATGAGCTGAATAGTCCGATTGATAGACTGAATGAACT
CTTGGTTCTTCCCCTTTTGGGTGGGAGTGTTTTGGATAATGTGCTTATAA
TTGAATTGTTTTGGTTGTGACGTATGAGCTCGATAATGACAAGATGAT

Coding sequence (CDS) from alignment at scaffold_388:17156..17653-

>TCONS_00063390 ID=TCONS_00063390|Name=TCONS_00063390|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_388:17156..17653- (Clytia hemisphaerica)
GCATTATCATCAGAAGTTCGTCTTGAACTTGAGGGAATCATCAGATGTTC
ACCCTACATCAAATCATCAACTGTTCGACGGTCATCTTCACAGTTCACCA
CGAATTTTGGTAACTATTACCACCGTGTTGTACATCATGAGCTGAATAGT
CCGATTGATAGACTGAATGAACTCTTGGTTCTTCCCCTTTTGGGTGGGAG
TGTTTTGGATAATGTGCTTATAATTGAATTGTTTTGGTTGTGACTAAGGT
ACTATCCACAAAGGTTCGCCCTTGAACTTGAAGTCATCAATGAAACGCCT
TGCTTTGCTAGGGCATTATCATCAGAAGTTCGTCTTGAACTTGAGGGAAT
CATCAGATGTTCACCCTACATCAAATCATCAACTGTTCGACGGTCATCTT
CACAGTTCACCACGAATTTTGGTAACTATTACCACCGTGTTGTACATCAT
GAGCTGAATAGTCCGATTGATAGACTGAATGAACTCTTGGTTCTTCCCCT
TTTGGGTGGGAGTGTTTTGGATAATGTGCTTATAATTGAATTGTTTTGGT
TGTGACTAAGGTACTATCCACAAAGGTTCGCCCTTGAACTTGAAGTCATC
AATGAAACGCCTTGCTTTGCTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039724XLOC_039724Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063390-proteinTCONS_00063390-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063390-exon-scaffold_388-1575043694:17583..17653TCONS_00063390-exon-scaffold_388-1575043694:17583..17653Clytia hemisphaericaexon
TCONS_00063390-exon-scaffold_388-1575043694:17156..17426TCONS_00063390-exon-scaffold_388-1575043694:17156..17426Clytia hemisphaericaexon
TCONS_00063390-exon-scaffold_388-1510915933:17583..17653TCONS_00063390-exon-scaffold_388-1510915933:17583..17653Clytia hemisphaericaexon
TCONS_00063390-exon-scaffold_388-1510915933:17156..17426TCONS_00063390-exon-scaffold_388-1510915933:17156..17426Clytia hemisphaericaexon
TCONS_00063390-exon-scaffold_388-1491911889:17583..17653TCONS_00063390-exon-scaffold_388-1491911889:17583..17653Clytia hemisphaericaexon
TCONS_00063390-exon-scaffold_388-1491911889:17156..17426TCONS_00063390-exon-scaffold_388-1491911889:17156..17426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_388supercontigscaffold_388:17156..17653 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.14925	0	0.00132871	0	3.21656	2.63075	2.57583	3.22409	0.804619	0	0.578173	2.38392	0.0306046	0.812219	0	0	0.652891	0	0	0	0	0	0	0	0	0.515061	0	0	0.209734	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top