TCONS_00063415 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063415
Unique NameTCONS_00063415
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063415 ID=TCONS_00063415|Name=TCONS_00063415|organism=Clytia hemisphaerica|type=transcript|length=3496bp
agcaaaGAAAATATGTTTATTGACGAAATAAAGTATTTTGGATTCAGCAA
AATAGCTAATAAAAGATCAAATAAGCATTTATGAACTTTACAAAGGGAGA
AACATTCAAAATTCCTCAGAACCACCAATCTAGAAGAACCACAGAACGAA
ACCTTGCTAAAAGTTTCATGGGTTAGAAACATGATAagttaaaatattat
aaaactACTAGAACTACGAAAACCTTAACAAGCCttcacaacaaaaacaa
aaacaaattttatttgaatataAATTGAAACATGTGAATAATATTCTAAA
GCCTTAATATTTATGATGCAAGCTTTTAGTGTATCAGTTTCCTAAGTGTA
GTATCTGATGattgttaaaaaattgttttcttcaaTGTGACTCTGTACTA
ATATTTCTTTTATGTTTGGACACAAGATGGAATTTTATGacaaaaatggc
taaaaaactttgccaaaattgaaaattaatatAAACAACTTAATTAACAA
TACCTAAAAAAGGAGAGGAAAACCCTCAATGAAACTGACATGTCAATTCT
GTGTAAGGAAAAGGAGACAGACACAATGAGGAAGAGgaaagaaagagaga
aaaagaaaaagagagagagagagagagagagaaagagaaaaggaggagaa
agagagagagagagagagagagaaagagaaaaGGAGGAGAAAGAGAGAGA
GCAAGAGAAAAGGaggagaaagagagagagagaaagagaaagagaaagag
aaaaagacagaaatctaatttaaaattatttatttaatcTAATTTATCTA
ATACACAACATCTTCAAATGATTGATTCTTATTACAGACCTTATAATAAT
GACCTTTTCTAAATGAAATTTGAGATGTGTAGAAAATAGGGTTACTAAAA
CGATACTGGAAATAcctaaaaaaaatttagaaatcaaTCAGATTCTAAAA
CATTGGGAAAATTTGTTACATAAGAATTCTCACAATCAACTCCAAGAAAT
AAACATTGCTCGATAATTTCTGTAACTTCAACCATGCTTAGTTTATCATT
AAGCTTCACTTTCTTCACTATTGATTCAGCTTCTCCTTCCTTCAGACAAC
TTGAAAAACCACTTTCAGGCTGGAAAACTTGAAAATGttcaatatcaAAA
AAATAACCAAATGCAACGTAGTATACATTTCCATTGTTGTTCTTGAAGCA
AGCAAAACgatcaatagaaaaataatgaccTGTGGCAAGGGAGACAGTTT
TGCTATTCCGGTGTATTTCTTTTGTGCGACAACATGATCTAATTATGTAT
CCTTCAAGCTTTATTGAAGGGAAGGTAAATGCAGAAAACTCTAGCTCCAT
AAATCGATTAATAAAAAGGGCGCTTTCTTCTTTTGAAGCATCATATGTGG
AAAGGGATCCTATTCTAATTAGTGATTAATTTCAATACAATACTTATGAT
AGGTTCCATTCAACTGCCACATGTATTTGTCCTCATTAGTGTCAGGTTTG
ATACAAGTTTCTGCTAAATATGGCAAATAGTTAGAAGCAGAAACTGCACT
AGCCAATTGAAACCAAATGTTCTGCGTACCATGTATTAACTTGAGAATAA
AGCCATTTTTATCTTCAAAACTGAATAAACTATACACATACAATGGACCA
AGTTCAGAAACAGTTTTAGGTAAATGTATAAGAGAATGGATATTTATTGT
CATGTAACGGCGCTGATAAAGCTTATCAGAGGTTgagcaaaataagaaaa
taaaccTCTTTGCTGTGGCGATGTCATTTGATGTGATATTTGATTTCATT
AGTAAATGAACTGCATGAGAAAGTAAATAGAAATGTTCAAAATAGATTGA
TGGCAACAGCTTTGACATGACAGGAACAAAATAATACAGTAAAAAGGATC
GAAATTCTGATGCTTTCCAATAACCAAGATTACTTTTAATTGTTCGGGGT
GCGCGGGAAATATAATTAGGTGGCTTCAATGATAACAAACGATCTTCAAC
CTGAGGTAAAGCTTGAAAAACAGAATAAGGTTCATTCTTATGAGAGACAT
CAAACATCAAATAATAGTACAGCATGCATGTAGTCTATGCCGATGCCACG
AATTACATCATAGCTAGGTACAAGCATTAATGGTGTGGGTCCTTTAATTC
CTTTTACATGATCTTTGGCAATCATTACTTCCTTAGCATGTTGGACTGTT
TCAGTATGTGTCCTGTGGGGACCAGTTGGATTGGATTTATTGAATGGAAA
ACACCTTACATTTCCgttttttgcagtttttgcTGTCTCCCCTTCTTGAA
GACACTTAGGACAGCCATAAAATGCATTAAACTGTTGGAAATTTAGCACA
CTGGCTTTAGCAGGCATGTCAAAAGTGCCACAAAGCAACATGGATTTAAC
GGTGACTTCTTCATTTATTTGTGTTCCAAAATAGGTCAGCTCTCTAAAAG
ATTCAAACTGCAGAGATAAGAACAGCAGCATATTAGGATGTGTCTCCCCG
TACCACAGGCCACTAATcaaaatgttttcctttttcctGCGATCTTTAAA
AGGTAATTCATTTATTGTGTAGAAGACTGGCCAGATAGATGACTTGATAC
TCTTGAAAAGGGGAACACCATCAGTGTTCCACATAAAAGATATATTGAAC
GGATTATTTAGAAAAGCAGAGTATGATTTATATAATGAAAAGTCGTATAT
GTCAGACGGTGATGATGCAGTACAGTTGAAGCGGTGATTTAATTTGAGAA
GCATACCAGCACgcgaaaaaattgctttgattTGGCTTTTTATGTCAAAT
TGCATGAAGTACGACTTGGTCATAggtttttccgttttttttgATTGGCA
ACATGTAGAATTTGGACAAACAACACTGTCTTTATCCAATTTCATTAAAC
ACTCCTTACAAAAGTAGTGTGTTTTGACATTAGGATTCAGTGAGCCAAAA
AGCTTCTTAAGCATGTACAATGATCTCGGAAAGATATGGTTTGATGGTAA
AAGAATATTAATGAGGATGATCAAGGAGGAAAGTGCAACACTAGGAAGTT
TGTATTTCTGCGAAAAAGCAATTATCATTGTTATGGCTGCTCCCAAAGTT
ACAATGGCCTCAGGGTAAAGTGGTGAGGAAAAGTGCCCAGTTATATCACT
GTTACATCCATCCTTCTCTGGTTCATCAAATAAATCATCTGCAAAGaaat
ttaattaatttgatTAATAGCATGAAAATAAAAGCATTGGGGACACAAGA
AGTTTTTTCCcattggtgcaatgcaacatactCCATCCCACCATTCACCC
ATCGattcaaatcaattttgttccattgtcccagggacaaaatcagcatG
TATTTTCCTCACTTTTCGNAATTCAAATCAATTCTgttccattgtcccag
ggacaaatcCAGCATGTATTTTCCTCACTTTtcgtcccatgaaacaaaaa
aaacatggcACGCACCaatgcgaaaaaaacttctcatgtccccaag
Run BLAST on NCBI

transcript from alignment at scaffold_389:22657..26231+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063415 ID=TCONS_00063415|Name=TCONS_00063415|organism=Clytia hemisphaerica|type=transcript|length=3575bp|location=Sequence derived from alignment at scaffold_389:22657..26231+ (Clytia hemisphaerica)
agcaaaGAAAATATGTTTATTGACGAAATAAAGTATTTTGGATTCAGCAA
AATAGCTAATAAAAGATCAAATAAGCATTTATGAACTTTACAAAGGGAGA
AACATTCAAAATTCCTCAGAACCACCAATCTAGAAGAACCACAGAACGAA
ACCTTGCTAAAAGTTTCATGGGTTAGAAACATGATAagttaaaatattat
aaaactACTAGAACTACGAAAACCTTAACAAGCCttcacaacaaaaacaa
aaacaaattttatttgaatataAATTGAAACATGTGAATAATATTCTAAA
GCCTTAATATTTATGATGCAAGCTTTTAGTGTATCAGTTTCCTAAGTGTA
GTATCTGATGattgttaaaaaattgttttcttcaaTGTGACTCTGTACTA
ATATTTCTTTTATGTTTGGACACAAGATGGAATTTTATGacaaaaatggc
taaaaaactttgccaaaattgaaaattaatatAAACAACTTAATTAACAA
TACCTAAAAAAGGAGAGGAAAACCCTCAATGAAACTGACATGTCAATTCT
GTGTAAGGAAAAGGAGACAGACACAATGAGGAAGAGgaaagaaagagaga
aaaagaaaaagagagagagagagagagagagaaagagaaaaggaggagaa
agagagagagagagagagagagaaagagaaaaGGAGGAGAAAGAGAGAGA
GCAAGAGAAAAGGaggagaaagagagagagagaaagagaaagagaaagag
aaaaagacagaaatctaatttaaaattatttatttaatcTAATTTATCTA
ATACACAACATCTTCAAATGATTGATTCTTATTACAGACCTTATAATAAT
GACCTTTTCTAAATGAAATTTGAGATGTGTAGAAAATAGGGTTACTAAAA
CGATACTGGAAATAcctaaaaaaaatttagaaatcaaTCAGATTCTAAAA
CATTGGGAAAATTTGTTACATAAGAATTCTCACAATCAACTCCAAGAAAT
AAACATTGCTCGATAATTTCTGTAACTTCAACCATGCTTAGTTTATCATT
AAGCTTCACTTTCTTCACTATTGATTCAGCTTCTCCTTCCTTCAGACAAC
TTGAAAAACCACTTTCAGGCTGGAAAACTTGAAAATGttcaatatcaAAA
AAATAACCAAATGCAACGTAGTATACATTTCCATTGTTGTTCTTGAAGCA
AGCAAAACgatcaatagaaaaataatgaccTGTGGCAAGGGAGACAGTTT
TGCTATTCCGGTGTATTTCTTTTGTGCGACAACATGATCTAATTATGTAT
CCTTCAAGCTTTATTGAAGGGAAGGTAAATGCAGAAAACTCTAGCTCCAT
AAATCGATTAATAAAAAGGGCGCTTTCTTCTTTTGAAGCATCATATGTGG
AAAGGGATCCTATTCTAATTAGTGATTAATTTCAATACAATACTTATGAT
AGGTTCCATTCAACTGCCACATGTATTTGTCCTCATTAGTGTCAGGTTTG
ATACAAGTTTCTGCTAAATATGGCAAATAGTTAGAAGCAGAAACTGCACT
AGCCAATTGAAACCAAATGTTCTGCGTACCATGTATTAACTTGAGAATAA
AGCCATTTTTATCTTCAAAACTGAATAAACTATACACATACAATGGACCA
AGTTCAGAAACAGTTTTAGGTAAATGTATAAGAGAATGGATATTTATTGT
CATGTAACGGCGCTGATAAAGCTTATCAGAGGTTgagcaaaataagaaaa
taaaccTCTTTGCTGTGGCGATGTCATTTGATGTGATATTTGATTTCATT
AGTAAATGAACTGCATGAGAAAGTAAATAGAAATGTTCAAAATAGATTGA
TGGCAACAGCTTTGACATGACAGGAACAAAATAATACAGTAAAAAGGATC
GAAATTCTGATGCTTTCCAATAACCAAGATTACTTTTAATTGTTCGGGGT
GCGCGGGAAATATAATTAGGTGGCTTCAATGATAACANATGCTTTTCAAT
AACCAAGATTACTTTTAATTGTTTGGTGTGCGCGGGTAATATAATTAGGT
GGCTTCAATGATAACAAACGATCTTCAACCTGAGGTAAAGCTTGAAAAAC
AGAATAAGGTTCATTCTTATGAGAGACATCAAACATCAAATAATAGTACA
GCATGCATGTAGTCTATGCCGATGCCACGAATTACATCATAGCTAGGTAC
AAGCATTAATGGTGTGGGTCCTTTAATTCCTTTTACATGATCTTTGGCAA
TCATTACTTCCTTAGCATGTTGGACTGTTTCAGTATGTGTCCTGTGGGGA
CCAGTTGGATTGGATTTATTGAATGGAAAACACCTTACATTTCCgttttt
tgcagtttttgcTGTCTCCCCTTCTTGAAGACACTTAGGACAGCCATAAA
ATGCATTAAACTGTTGGAAATTTAGCACACTGGCTTTAGCAGGCATGTCA
AAAGTGCCACAAAGCAACATGGATTTAACGGTGACTTCTTCATTTATTTG
TGTTCCAAAATAGGTCAGCTCTCTAAAAGATTCAAACTGCAGAGATAAGA
ACAGCAGCATATTAGGATGTGTCTCCCCGTACCACAGGCCACTAATcaaa
atgttttcctttttcctGCGATCTTTAAAAGGTAATTCATTTATTGTGTA
GAAGACTGGCCAGATAGATGACTTGATACTCTTGAAAAGGGGAACACCAT
CAGTGTTCCACATAAAAGATATATTGAACGGATTATTTAGAAAAGCAGAG
TATGATTTATATAATGAAAAGTCGTATATGTCAGACGGTGATGATGCAGT
ACAGTTGAAGCGGTGATTTAATTTGAGAAGCATACCAGCACgcgaaaaaa
ttgctttgattTGGCTTTTTATGTCAAATTGCATGAAGTACGACTTGGTC
ATAggtttttccgttttttttgATTGGCAACATGTAGAATTTGGACAAAC
AACACTGTCTTTATCCAATTTCATTAAACACTCCTTACAAAAGTAGTGTG
TTTTGACATTAGGATTCAGTGAGCCAAAAAGCTTCTTAAGCATGTACAAT
GATCTCGGAAAGATATGGTTTGATGGTAAAAGAATATTAATGAGGATGAT
CAAGGAGGAAAGTGCAACACTAGGAAGTTTGTATTTCTGCGAAAAAGCAA
TTATCATTGTTATGGCTGCTCCCAAAGTTACAATGGCCTCAGGGTAAAGT
GGTGAGGAAAAGTGCCCAGTTATATCACTGTTACATCCATCCTTCTCTGG
TTCATCAAATAAATCATCTGCAAAGaaatttaattaatttgatTAATAGC
ATGAAAATAAAAGCATTGGGGACACAAGAAGTTTTTTCCcattggtgcaa
tgcaacatactCCATCCCACCATTCACCCATCGattcaaatcaattttgt
tccattgtcccagggacaaaatcagcatGTATTTTCCTCACTTTTCGNAA
TTCAAATCAATTCTgttccattgtcccagggacaaatcCAGCATGTATTT
TCCTCACTTTtcgtcccatgaaacaaaaaaaacatggcACGCACCaatgc
gaaaaaaacttctcatgtccccaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039746XLOC_039746Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063415-exon-scaffold_389-1491911889:22657..24625TCONS_00063415-exon-scaffold_389-1491911889:22657..24625Clytia hemisphaericaexon
TCONS_00063415-exon-scaffold_389-1510915933:22657..24625TCONS_00063415-exon-scaffold_389-1510915933:22657..24625Clytia hemisphaericaexon
TCONS_00063415-exon-scaffold_389-1575043694:22657..24625TCONS_00063415-exon-scaffold_389-1575043694:22657..24625Clytia hemisphaericaexon
TCONS_00063415-exon-scaffold_389-1491911889:24705..26231TCONS_00063415-exon-scaffold_389-1491911889:24705..26231Clytia hemisphaericaexon
TCONS_00063415-exon-scaffold_389-1510915933:24705..26231TCONS_00063415-exon-scaffold_389-1510915933:24705..26231Clytia hemisphaericaexon
TCONS_00063415-exon-scaffold_389-1575043694:24705..26231TCONS_00063415-exon-scaffold_389-1575043694:24705..26231Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_389supercontigscaffold_389:22657..26231 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.156658	0.208533	0.134429	0.062911	0.4809	0.531677	0.89213	1.32738	0.655447	0.386428	0.734153	1.05229	1.45665	1.37804	0.54836	0.702002	0.904561	0.836601	0.350963	0.757947	1.11033	1.36662	0.563309	0.622496	2.00808	2.72472	1.31949	0.636169	0.535737	1.60506
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009667DUF1258
IPR004242Transposase_21
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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