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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063446 ID=TCONS_00063446|Name=TCONS_00063446|organism=Clytia hemisphaerica|type=transcript|length=863bp
atttttcctctaCTCAACTTTTTGTAGAGGGATTACACTGGCATGGACAG
GTCTGAATGACCACAAAGACAACACAATTGACGGAACGTTTGAATATTTA
ACCGGTATCGACGGATTTGTCCCTTTATCACCTCTCCCATCAAACAGCAT
TCTGAAAGATTGTGCTGCACTTCAGGttggaaatgaaaataaattcgaAG
TTCGCTCGTGTGGTGGGACAACAAAAATATGGTCGATTTGCAAAATGAAT
TATTTCCGCCAATCCATTATCTTTGTACCAGCTGAAGTTCCACAAAGAGA
CGAATCTGACGGAGTATTAACCGAATTGAATTGGTCAGATGCGGATCAAG
AGTGCAAGAACAAAGGGGGAGAATTGATGAACATTTGTGGCATGAATAGT
GTTATCTTACGTCGAATTTTACGCAAAAGGAATATCGATACTCCAGTTTG
GATTGGAATGAATTATGATACTTCAAAGAAGAAGTTCTTTTGGAGAAATG
GAGTCTCAAAATTTAGGAGGTGGTGTCGTGGAGAGCCTTCATTAAACCCA
GACCCTTTAGCACCTAACCAATGCGTGGCTTACATAGTTGGTGGAAAACC
CCGTGGAAGAGGCACCGGAAAAGGTTGCATTAGGGTGGAGCCATGTGGAA
CCACCATCGCACCCAATaagaaaatgtttgtttgtcaAATCAAAGAGTCA
ACAAATAACGATTTGGTGAACGATACCTTGAACGAAGTGGAAAAATAAAG
GAATCATATCTTTGCTATGATTTTCAAATGATTTGGAgacttttaaacat
ttttagccgttttttgtttcttttttataaacttGGCATGGACAGCAGTA
GCGTGGTTAGACT Run BLAST on NCBI transcript from alignment at scaffold_39:199434..202932+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063446 ID=TCONS_00063446|Name=TCONS_00063446|organism=Clytia hemisphaerica|type=transcript|length=3499bp|location=Sequence derived from alignment at scaffold_39:199434..202932+ (Clytia hemisphaerica)
atttttcctctaCTCAACTTTTTGTAGAGGGATTACACTGGCATGGACAG
GTCTGAATGACCACAAAGACAACACAATTGACGGAACGTTTGAATATTTA
ACCGGTATCGACGGATTTGTCCCTTTATCACCTCTCCCATCAAACAGCAT
TCTGAAAGATTGTGCTGCACTTCAGGTATatactaaaaaacttttttttt
catttgcagTTTCTGTGAAGTCAAGCACTGTGGTGTGGGGGGCTACTCTT
GAGTACCTAATAGTCGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAAATTGATCGAAAAATTAATCATGGGGG
GGGGGCTGCTGGAGACCAACTTTATGCTCCCCAGGGGGGCAGTGGGtatg
acggtatgtgcggggaacagattggcttttagaatcgcacccttacagtg
aagaagaaaatcggtgaaattcatacccttacagtgcattttttcaacaa
tagagcaaaagaagcaaaatttttgagcaaaaatcggcaatttttcctag
atttgctgaaatttccacccatacagtgcatttatcaaaagtctaCCCTT
AAAATGcatttatgatattttgaaaaacatagcCTTAActgccgcacata
cccgtcagtcaatttgcctgactgcccccgaGTCATACCATATCAGTTTT
TACAGGAGTTTAAGGTCttcttacagtatatggcccccaaaacggagacg
gcccccaaaacggaggttttcattgaaatgaagattctgacttgtagatt
tatcagaatcttcatttcaatgaaaacctccgttttgggggccgtctccg
ttttgggggccatctccgttttgggggccatctccgttttgggggccatc
tccgttttgggggccatctccgttttgggggccatctccgttttgggggc
catctccgttttgggggccatctccgttttgggggccatctccgttttgg
gggccatctccgttttgggggccatctccgttttgggggccatctccgtt
ttgggggccatctccgttttgggggccatctccgttttgggggccatctc
cgttttgggggccatctccgttttgggggccatctccgttttgggggcca
tctccgttttgggggccatctccgttttgggggccatctccgttttgggg
gccatctccgttttgggggccatctccgttttgggggccatctccgtttt
gggggccatctccgttttgggggccatctccgttttgggggccatctccg
ttttgggggccatctccgttttgggggccatctccgttttgggggccatc
tccgttttgggggccatctccgttttgggggccatctccgttttgggggc
catctccgttttgggggccattagaaaaaagctacctatctttaagcgat
tgaaaaatattgttgaaattgaaaattttgaaaaagaacttccaggaaat
aaagtagagatgttaaaggttttcatgcagcaaaaatttttgtaaaatct
cttttcctctagatttgagagaaatttcaaatttgatcgccgttttgggg
gccacatataCTGTAGTCATTATAAAATACACTGATCTGGTAATCCACTG
TTTTAGCTTTTTCgtcaaattttcatttgttgTAAATAAAAAGCAAGTTG
CGATTTGGATCACATTATTATTTTCGACTCTTGGGATTGGTAAACAAATC
CATTTAAGCTCTAACCCAgcttgcacacaacgttgtttcaacgtttatct
aatgttcacaacgtccgtataacgttagatgaacgttgaaacaacgttgt
atgtCAGCTGGGAACTGCTAAAAAATAGAGATAAACgaaagccttccaga
ccggggtATTTTATAATGACAATCTGTTTAGACACGACCTGTTAATTTAA
AAGCCTAAGATTtgtaagatttttaaattggccaACAATATATTATTTAA
GTACAAGAAGATTTTTAGGTTTAGAACACCCAAAGGCCTCTTAACCTTTT
GACGTTCTCAAAGGAACTGAAATTTTTACGCTTTTTACGTTTTCAGGttg
gaaatgaaaataaattcgaAGTTCGCTCGTGTGGTGGGACAACAAAAATA
TGGTCGATTTGCAAAATGAATTATTTCCGCCAATCCATTATCTTTGTACC
AGCTGAAGTTCCACAAAGAGACGAATCTGACGGAGTATTAACCGAATTGA
ATTGGTCAGATGCGGATCAAGAGTGCAAGAACAAAGGGGGAGAATTGATG
AACATTTGTGGCATGAATAGTGTTATCTTACGTCGAATTTTACGCAAAAG
GTATCAATAGATATCGTTTGTTTTCTAAAGTTTGCAGTCTTTTTTCCTAC
CATGCAGAAACCACTCAAGGAAATTAGTCTAATAATAAGACTTCTGCTCA
TACTCTAGCGAAACGAGTTTCTTATAGGAGCTATATCTATTGAGTTACAT
TAAAAGTGAATTGGAAATACTTATCCACGCAATGTTATCCACAGTTCACA
TCATTGGTATACATCCTGGTGCAAGACAAACTTTGTCGCCTAATTTAGGA
AAAAAAACATCCCAATTCTTCGGTGTAAATACTTCAATTATCGGCTCAAG
GATATAATTGCATAATTTTTCAATATTGCTAAGAATTCAGAATACGCTGT
CTCAGTGTTACACTTCGTCGGCCTAGAAAACAAAAAGCGAAAACAACCGC
AgcaccctcagccaaagtacaaCTGTCTCTTTACAAAATGTATGAATCTC
AAACTTTTTGTACAGTTTTTCAACTTTCCCTATATTTGAATTTGCCTTGA
TTGTTATTTTTTCAGGAATATCGATACTCCAGTTTGGATTGGAATGAATT
ATGATACTTCAAAGAAGAAGTTCTTTTGGAGAAATGGAGTCTCAAAATTT
AGGAGGTGGTGTCGTGGAGAGCCTTCATTAAACCCAGACCCTTTAGCACC
TAACCAATGCGTGGCTTACATAGTTGGTGGAAAACCCCGTGGAAGAGGCA
CCGGAAAAGGTTGCATTAGGGTGGAGCCATGTGGAACCACCATCGCACCC
AATaagaaaatgtttgtttgtcaAATCAAAGAGTCAACAAATAACGATTT
GGTGAACGATACCTTGAACGAAGTGGAAAAATAAAGGAATCATATCTTTG
CTATGATTTTCAAATGATTTGGAgacttttaaacatttttagccgttttt
tgtttcttttttataaacttGGCATGGACAGCAGTAGCGTGGTTAGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063446-exon-scaffold_39-1491911889:199434..199608 | TCONS_00063446-exon-scaffold_39-1491911889:199434..199608 | Clytia hemisphaerica | exon |
| TCONS_00063446-exon-scaffold_39-1510915933:199434..199608 | TCONS_00063446-exon-scaffold_39-1510915933:199434..199608 | Clytia hemisphaerica | exon |
| TCONS_00063446-exon-scaffold_39-1575043694:199434..199608 | TCONS_00063446-exon-scaffold_39-1575043694:199434..199608 | Clytia hemisphaerica | exon |
| TCONS_00063446-exon-scaffold_39-1491911889:201730..201983 | TCONS_00063446-exon-scaffold_39-1491911889:201730..201983 | Clytia hemisphaerica | exon |
| TCONS_00063446-exon-scaffold_39-1510915933:201730..201983 | TCONS_00063446-exon-scaffold_39-1510915933:201730..201983 | Clytia hemisphaerica | exon |
| TCONS_00063446-exon-scaffold_39-1575043694:201730..201983 | TCONS_00063446-exon-scaffold_39-1575043694:201730..201983 | Clytia hemisphaerica | exon |
| TCONS_00063446-exon-scaffold_39-1491911889:202499..202932 | TCONS_00063446-exon-scaffold_39-1491911889:202499..202932 | Clytia hemisphaerica | exon |
| TCONS_00063446-exon-scaffold_39-1510915933:202499..202932 | TCONS_00063446-exon-scaffold_39-1510915933:202499..202932 | Clytia hemisphaerica | exon |
| TCONS_00063446-exon-scaffold_39-1575043694:202499..202932 | TCONS_00063446-exon-scaffold_39-1575043694:202499..202932 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_39 | supercontig | scaffold_39:199434..202932 + |
Blast
The following BLAST results are available for this feature:
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