TCONS_00063468 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063468
Unique NameTCONS_00063468
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063468 ID=TCONS_00063468|Name=TCONS_00063468|organism=Clytia hemisphaerica|type=transcript|length=347bp
CACCCGCTCAACAAGCATGACAATTTTCAGTTATCTCTAAGACATTCATT
GAGGCTGACATTGAacagaaatttgaaaatgaagttttttacCAATACAT
TATTACTAGGGATCGCctttctttctttggtggttGGTTTCGAGGGGAAG
AAAAAGTCTTGTGAAGAATTTATTCAAGGTCGAGAAGGGACTCCTGTCTG
TCGAGGAGAAAATGTATTTTACGAGTTTTACCCACCACGCGCAGATTTTT
TTAAAGCTGAACGAAATTGTGTGGCGAGAGGAGGACATTTGACAGATATA
GTAGACGAAGAAGAAGCTGATTTCCTTCTTCAAGAAATGGAGAGCAG
Run BLAST on NCBI

protein sequence of TCONS_00063468-protein

>TCONS_00063468-protein ID=TCONS_00063468-protein|Name=TCONS_00063468-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
HPLNKHDNFQLSLRHSLRLTLNRNLKMKFFTNTLLLGIAFLSLVVGFEGK
KKSCEEFIQGREGTPVCRGENVFYEFYPPRADFFKAERNCVARGGHLTDI
VDEEEADFLLQEMES
Run BLAST on NCBI

transcript from alignment at scaffold_39:213720..214362-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063468 ID=TCONS_00063468|Name=TCONS_00063468|organism=Clytia hemisphaerica|type=transcript|length=643bp|location=Sequence derived from alignment at scaffold_39:213720..214362- (Clytia hemisphaerica)
CACCCGCTCAACAAGCATGACAATTTTCAGTTATCTCTAAGACATTCATT
GAGGCTGACATTGAACAGAAATTTGAAAATGAAGTTTTTTACCAATACAT
TATTACTAGGGATCGCCTTTCTTTCTTTGGTGGTTGGTTTCGAGGGGAAG
AAAAAGTCTTGTGAAGAATTTATTCAAGGTCGAGAAGGGACTCCTGTCTG
TCGAGGTAAGCGGGTGTCTATCATCTAAGCTGATTCTGAGGTTTGGTTGT
TCTTATTATTTTGGCACTTTGAGCCTTAAATTGTTCTTATCCTGTTCTTA
TTTATTGGGGGTAATTGAGGTATTTCGAACCGTAAGTTGTGTGAGTGGAG
TAATTTCAGGCTCAGATCATTGTTCTTAAATTGTTCTTTTTTGGGGGGAT
TTTGAGCCTCATTGTTCTTATAAATTTGTTCTTATAAAAGAAAAAAAAGT
GTAATTCGAAAACGTTTTTAATCTTTAATTTTTATCTTTGTTTCATTCCA
GGAGAAAATGTATTTTACGAGTTTTACCCACCACGCGCAGATTTTTTTAA
AGCTGAACGAAATTGTGTGGCGAGAGGAGGACATTTGACAGATATAGTAG
ACGAAGAAGAAGCTGATTTCCTTCTTCAAGAAATGGAGAGCAG

Coding sequence (CDS) from alignment at scaffold_39:213720..214362-

>TCONS_00063468 ID=TCONS_00063468|Name=TCONS_00063468|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_39:213720..214362- (Clytia hemisphaerica)
GAGAAAATGTATTTTACGAGTTTTACCCACCACGCGCAGATTTTTTTAAA
GCTGAACGAAATTGTGTGGCGAGAGGAGGACATTTGACAGATATAGTAGA
CGAAGAAGAAGCTGATTTCCTTCTTCAAGAAATGGAGAGCCACCCGCTCA
ACAAGCATGACAATTTTCAGTTATCTCTAAGACATTCATTGAGGCTGACA
TTGAACAGAAATTTGAAAATGAAGTTTTTTACCAATACATTATTACTAGG
GATCGCCTTTCTTTCTTTGGTGGTTGGTTTCGAGGGGAAGAAAAAGTCTT
GTGAAGAATTTATTCAAGGTCGAGAAGGGACTCCTGTCTGTCGAGGAGAA
AATGTATTTTACGAGTTTTACCCACCACGCGCAGATTTTTTTAAAGCTGA
ACGAAATTGTGTGGCGAGAGGAGGACATTTGACAGATATAGTAGACGAAG
AAGAAGCTGATTTCCTTCTTCAAGAAATGGAGAGCCACCCGCTCAACAAG
CATGACAATTTTCAGTTATCTCTAAGACATTCATTGAGGCTGACATTGAA
CAGAAATTTGAAAATGAAGTTTTTTACCAATACATTATTACTAGGGATCG
CCTTTCTTTCTTTGGTGGTTGGTTTCGAGGGGAAGAAAAAGTCTTGTGAA
GAATTTATTCAAGGTCGAGAAGGGACTCCTGTCTGTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039778XLOC_039778Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063468-proteinTCONS_00063468-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063468-exon-scaffold_39-1575043694:214158..214362TCONS_00063468-exon-scaffold_39-1575043694:214158..214362Clytia hemisphaericaexon
TCONS_00063468-exon-scaffold_39-1575043694:213720..213861TCONS_00063468-exon-scaffold_39-1575043694:213720..213861Clytia hemisphaericaexon
TCONS_00063468-exon-scaffold_39-1510915933:214158..214362TCONS_00063468-exon-scaffold_39-1510915933:214158..214362Clytia hemisphaericaexon
TCONS_00063468-exon-scaffold_39-1510915933:213720..213861TCONS_00063468-exon-scaffold_39-1510915933:213720..213861Clytia hemisphaericaexon
TCONS_00063468-exon-scaffold_39-1491911889:214158..214362TCONS_00063468-exon-scaffold_39-1491911889:214158..214362Clytia hemisphaericaexon
TCONS_00063468-exon-scaffold_39-1491911889:213720..213861TCONS_00063468-exon-scaffold_39-1491911889:213720..213861Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_39supercontigscaffold_39:213720..214362 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28542	2.75768	2.32867	0	1.38677	0.273961	0	0	0	0.268344	0.260461	0	0.512936	3.19614	0.291962	0	0.385985	0.197811	0	0	0	0.363722	0.884304	0.535974	0	0.246341	0	0.376212	0.570687	0.87216
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016186C-type_lectin-like/link
IPR016187CTDL_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top