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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063460 ID=TCONS_00063460|Name=TCONS_00063460|organism=Clytia hemisphaerica|type=transcript|length=1579bp
TTAGGATAgcataaaaagcaaaaaatggatAAATATGAACCGGAAAATTT
TCCGTTGACCAAAGGCGATTTAAACCACAATGGAGGTTTATTAGCCCGCC
CTTTGGAACGATCCGAGCAGTACCGAACACAATTCGGGTCAAATTTCTCA
TTCCACCTTACTGATGTTCACAATAGAACGGAGAAAAAACAACTCAATGG
TGATACCGAATATGGTCATGAAAATCCTAAAAAAGTTAAACGAGTCCGAG
AGCTAAATGAAAAGATCAGGGGCTACATCGACGGCTTTACGGTTCATGGA
TTAACACGCGTTTTAACGGCACCGCGTAAAGAGTCTGCGTTCTGGTTCAT
TACTCTAGCCTCCGCTTTATTGATGGCAGTCATTGTGGTACAAGGGCTAA
TGTCGAAATATTACAGGCATGAAGTCTACACCGAAATTCGTTCCATTGTC
ACCGATAAAAACCGATTCCCAAGTATCAGTTTTTGTGAATTCAACTTGCT
GAAAAGAAGCTATTTCGCTTATTGCGGAGGCCACATTAAAGCTGCAAATA
ACGTGACGTGTAATTTGGATGATATTCCCGTACCGCAAGATGTCAATCAT
ACAGGACAAGATTATTGGTCCAATGGCATGTTCGAGATACGAGAATGTAT
CACATGGGGACACGGCAAATGCGTCATCTCCGAGCTAGTACAATCAAAGA
AGGATCTCAACCATTCGTGTTTCACGTGGAACTATGAGGGTACATTTCAT
GATATGTATAGTCACGTGACTCTTATCATCGAGTTCAAAAAGCCATCTTG
GATGACCAATCGACCGCATATCATTGCTGTACCGCATGACtccaaaatca
aagaaatcgaCATGACTATGGCCATTGatttaaacaaacaaaaaaagaac
caaTTAACAATGGGTCTTACTCAAGTCCAGCGCAAAGAAGCGCCGTTTCC
TTCAAAATGCATAAACGGTGGAAGAGATATTGACCTTTTGCCTGGCATCT
ATGCTAGACGCACGTGCGCCGAAACGCAGATTCacacaaatattttcaaa
aaatgtggtGATACAACAGACTATATGAGACCGTATATCCAGAATGCTGT
CTCACCAAACAGAACCAGATTCACCAACATGACTGAAGTGACGAATTGTA
TTTATGCTAtgagtgaaaatttaaaagctACCTCGTATAGTACTGGATGT
CCTTTCCCGTGTCGTGAGCTTGAAATCGCGACGTTCACGCACCACGCAGA
ATGTGATGAAGATACGGAAAGATATATTAGTAAGGACAACGACTTTTATT
ATCAAGTTGAACTTCAGTTACAGAATGTTGATTCGTATAAAATCATGGAG
GAGAAAGAAATGTATCCATGGGATCAGATGGCTTGTGAGATAGGTGGATT
CCTTGGTTTAGTGATGGGAGCTTCAATGTTATCCATGATTGAAATCATAG
CGTGTACTTGGTTTTATGGTATCAAGAGAGGGAAGTATGGTGGAAAAAAC
GAGGGATAAAAATATGGATTGTATTAATAATGAATCATGGGAAATATGGA
TTCTAATAGCACCCACAATGCATGACGAG Run BLAST on NCBI protein sequence of TCONS_00063460-protein >TCONS_00063460-protein ID=TCONS_00063460-protein|Name=TCONS_00063460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp
MDKYEPENFPLTKGDLNHNGGLLARPLERSEQYRTQFGSNFSFHLTDVHN
RTEKKQLNGDTEYGHENPKKVKRVRELNEKIRGYIDGFTVHGLTRVLTAP
RKESAFWFITLASALLMAVIVVQGLMSKYYRHEVYTEIRSIVTDKNRFPS
ISFCEFNLLKRSYFAYCGGHIKAANNVTCNLDDIPVPQDVNHTGQDYWSN
GMFEIRECITWGHGKCVISELVQSKKDLNHSCFTWNYEGTFHDMYSHVTL
IIEFKKPSWMTNRPHIIAVPHDSKIKEIDMTMAIDLNKQKKNQLTMGLTQ
VQRKEAPFPSKCINGGRDIDLLPGIYARRTCAETQIHTNIFKKCGDTTDY
MRPYIQNAVSPNRTRFTNMTEVTNCIYAMSENLKATSYSTGCPFPCRELE
IATFTHHAECDEDTERYISKDNDFYYQVELQLQNVDSYKIMEEKEMYPWD
QMACEIGGFLGLVMGASMLSMIEIIACTWFYGIKRGKYGGKNEG Run BLAST on NCBI transcript from alignment at scaffold_39:329816..332356+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063460 ID=TCONS_00063460|Name=TCONS_00063460|organism=Clytia hemisphaerica|type=transcript|length=2541bp|location=Sequence derived from alignment at scaffold_39:329816..332356+ (Clytia hemisphaerica)
TTAGGATAgcataaaaagcaaaaaatggatAAATATGAACCGGAAAATTT
TCCGTTGACCAAAGGCGATTTAAACCACAATGGAGGTATGCATCTGGTTT
TTTCTGTATTGCCAAGTTCCACTCTTTTATGAGACCCAGTGAATTTTCGC
GGTGCGAGGGTACTAAATTAGTGGATTTTTTCGGACCTAATTTTTGCAgt
agacacccaaaaacgcgaaaattagtttccttaaGGTATTATAGGGGCAG
GGCACTAAAAGATCAGATTTTTAGAGGCACTCATGATCTGTAGTTTTAAA
ATCTATATTGTAAGGGTTCAAAAGTTCTTGGCTTCACAGCCGATCAAGTA
GAACGTTTTATACAGTATCATGGTGGCAGGAAGGTCATTTTTATTTGGGA
TGGGGGGGGGACAAAAGACAAGAGGCGCAAAAAGAGGTCTTTGATTACTA
ATTTCGGCAGCCCCTTGCTTTTTTATACCTCAGAATTAGCAGTTTTCata
caaaaagagaaaatataccTAAAGATTCCCGTGCTCGCTCGCGTAATTTT
TACAAAGATAGTTTATTTCAAATGGGGCCATCGAAATCGCTACTTTCGAA
AACTGTCTCCCCTGTGTCGGTCAACCCACTAGTTTTAGACCTCTCCCTTC
ATAACCACACGTGGAGATTGGTTTTCAAGATACAGTAGCATGGTGGCAGG
GAAGTAACCCCCCAGTggctatttttatttttttttgggtgGGGGGAGGG
AAGGACAAGAGGCGCAAAAAGAGGTCTTTAATTACTAATTTCGGCGGCAC
CTTGCTTTTTTATACCTCAGAATTAGCAGTTTTCatacaaaaagagaaaa
tataccCAAAGATTCCCGTGCTCGCTCGCGTAATTTTTACAAagatattt
tatttcaaaagggGGCATCAAAATCGCTACTTTTGAAAACTGTCTCCCCA
GTGTTGGTCAACCCACTAGTTTTAGACTCCCTTCATCACCACACGCGGAG
ATTGGTTTTCTAGATATTGAATTTTGCTTTCAATCACATTTTTTCAGGTT
TATTAGCCCGCCCTTTGGAACGATCCGAGCAGTACCGAACACAATTCGGG
TCAAATTTCTCATTCCACCTTACTGATGTTCACAATAGAACGGAGAAAAA
ACAACTCAATGGTGATACCGAATATGGTCATGAAAATCCTAAAAAAGTTA
AACGAGTCCGAGAGCTAAATGAAAAGATCAGGGGCTACATCGACGGCTTT
ACGGTTCATGGATTAACACGCGTTTTAACGGCACCGCGTAAAGAGTCTGC
GTTCTGGTTCATTACTCTAGCCTCCGCTTTATTGATGGCAGTCATTGTGG
TACAAGGGCTAATGTCGAAATATTACAGGCATGAAGTCTACACCGAAATT
CGTTCCATTGTCACCGATAAAAACCGATTCCCAAGTATCAGTTTTTGTGA
ATTCAACTTGCTGAAAAGAAGCTATTTCGCTTATTGCGGAGGCCACATTA
AAGCTGCAAATAACGTGACGTGTAATTTGGATGATATTCCCGTACCGCAA
GATGTCAATCATACAGGACAAGATTATTGGTCCAATGGCATGTTCGAGAT
ACGAGAATGTATCACATGGGGACACGGCAAATGCGTCATCTCCGAGCTAG
TACAATCAAAGAAGGATCTCAACCATTCGTGTTTCACGTGGAACTATGAG
GGTACATTTCATGATATGTATAGTCACGTGACTCTTATCATCGAGTTCAA
AAAGCCATCTTGGATGACCAATCGACCGCATATCATTGCTGTACCGCATG
ACtccaaaatcaaagaaatcgaCATGACTATGGCCATTGatttaaacaaa
caaaaaaagaaccaaTTAACAATGGGTCTTACTCAAGTCCAGCGCAAAGA
AGCGCCGTTTCCTTCAAAATGCATAAACGGTGGAAGAGATATTGACCTTT
TGCCTGGCATCTATGCTAGACGCACGTGCGCCGAAACGCAGATTCacaca
aatattttcaaaaaatgtggtGATACAACAGACTATATGAGACCGTATAT
CCAGAATGCTGTCTCACCAAACAGAACCAGATTCACCAACATGACTGAAG
TGACGAATTGTATTTATGCTAtgagtgaaaatttaaaagctACCTCGTAT
AGTACTGGATGTCCTTTCCCGTGTCGTGAGCTTGAAATCGCGACGTTCAC
GCACCACGCAGAATGTGATGAAGATACGGAAAGATATATTAGTAAGGACA
ACGACTTTTATTATCAAGTTGAACTTCAGTTACAGAATGTTGATTCGTAT
AAAATCATGGAGGAGAAAGAAATGTATCCATGGGATCAGATGGCTTGTGA
GATAGGTGGATTCCTTGGTTTAGTGATGGGAGCTTCAATGTTATCCATGA
TTGAAATCATAGCGTGTACTTGGTTTTATGGTATCAAGAGAGGGAAGTAT
GGTGGAAAAAACGAGGGATAAAAATATGGATTGTATTAATAATGAATCAT
GGGAAATATGGATTCTAATAGCACCCACAATGCATGACGAG Coding sequence (CDS) from alignment at scaffold_39:329816..332356+ >TCONS_00063460 ID=TCONS_00063460|Name=TCONS_00063460|organism=Clytia hemisphaerica|type=CDS|length=2970bp|location=Sequence derived from alignment at scaffold_39:329816..332356+ (Clytia hemisphaerica)
atggatAAATATGAACCGGAAAATTTTCCGTTGACCAAAGGCGATTTAAA
CCACAATGGAGGTTTATTAGCCCGCCCTTTGGAACGATCCGAGCAGTACC
GAACACAATTCGGGTCAAATTTCTCATTCCACCTTACTGATGTTCACAAT
AGAACGGAGAAAAAACAACTCAATGGTGATACCGAATATGGTCATGAAAA
TCCTAAAAAAGTTAAACGAGTCCGAGAGCTAAATGAAAAGATCAGGGGCT
ACATCGACGGCTTTACGGTTCATGGATTAACACGCGTTTTAACGGCACCG
CGTAAAGAGTCTGCGTTCTGGTTCATTACTCTAGCCTCCGCTTTATTGAT
GGCAGTCATTGTGGTACAAGGGCTAATGTCGAAATATTACAGGCATGAAG
TCTACACCGAAATTCGTTCCATTGTCACCGATAAAAACCGATTCCCAAGT
ATCAGTTTTTGTGAATTCAACTTGCTGAAAAGAAGCTATTTCGCTTATTG
CGGAGGCCACATTAAAGCTGCAAATAACGTGACGTGTAATTTGGATGATA
TTCCCGTACCGCAAGATGTCAATCATACAGGACAAGATTATTGGTCCAAT
GGCATGTTCGAGATACGAGAATGTATCACATGGGGACACGGCAAATGCGT
CATCTCCGAGCTAGTACAATCAAAGAAGGATCTCAACCATTCGTGTTTCA
CGTGGAACTATGAGGGTACATTTCATGATATGTATAGTCACGTGACTCTT
ATCATCGAGTTCAAAAAGCCATCTTGGATGACCAATCGACCGCATATCAT
TGCTGTACCGCATGACtccaaaatcaaagaaatcgaCATGACTATGGCCA
TTGatttaaacaaacaaaaaaagaaccaaTTAACAATGGGTCTTACTCAA
GTCCAGCGCAAAGAAGCGCCGTTTCCTTCAAAATGCATAAACGGTGGAAG
AGATATTGACCTTTTGCCTGGCATCTATGCTAGACGCACGTGCGCCGAAA
CGCAGATTCacacaaatattttcaaaaaatgtggtGATACAACAGACTAT
ATGAGACCGTATATCCAGAATGCTGTCTCACCAAACAGAACCAGATTCAC
CAACATGACTGAAGTGACGAATTGTATTTATGCTAtgagtgaaaatttaa
aagctACCTCGTATAGTACTGGATGTCCTTTCCCGTGTCGTGAGCTTGAA
ATCGCGACGTTCACGCACCACGCAGAATGTGATGAAGATACGGAAAGATA
TATTAGTAAGGACAACGACTTTTATTATCAAGTTGAACTTCAGTTACAGA
ATGTTGATTCGTATAAAATCATGGAGGAGAAAGAAATGTATCCATGGGAT
CAGATGGCTTGTGAGATAGGTGGATTCCTTGGTTTAGTGATGGGAGCTTC
AATGTTATCCATGATTGAAATCATAGCGTGTACTTGGTTTTATGGTATCA
AGAGAGGGAAGTATGGTGGAAAAAACGAGGGATAAatggatAAATATGAA
CCGGAAAATTTTCCGTTGACCAAAGGCGATTTAAACCACAATGGAGGTTT
ATTAGCCCGCCCTTTGGAACGATCCGAGCAGTACCGAACACAATTCGGGT
CAAATTTCTCATTCCACCTTACTGATGTTCACAATAGAACGGAGAAAAAA
CAACTCAATGGTGATACCGAATATGGTCATGAAAATCCTAAAAAAGTTAA
ACGAGTCCGAGAGCTAAATGAAAAGATCAGGGGCTACATCGACGGCTTTA
CGGTTCATGGATTAACACGCGTTTTAACGGCACCGCGTAAAGAGTCTGCG
TTCTGGTTCATTACTCTAGCCTCCGCTTTATTGATGGCAGTCATTGTGGT
ACAAGGGCTAATGTCGAAATATTACAGGCATGAAGTCTACACCGAAATTC
GTTCCATTGTCACCGATAAAAACCGATTCCCAAGTATCAGTTTTTGTGAA
TTCAACTTGCTGAAAAGAAGCTATTTCGCTTATTGCGGAGGCCACATTAA
AGCTGCAAATAACGTGACGTGTAATTTGGATGATATTCCCGTACCGCAAG
ATGTCAATCATACAGGACAAGATTATTGGTCCAATGGCATGTTCGAGATA
CGAGAATGTATCACATGGGGACACGGCAAATGCGTCATCTCCGAGCTAGT
ACAATCAAAGAAGGATCTCAACCATTCGTGTTTCACGTGGAACTATGAGG
GTACATTTCATGATATGTATAGTCACGTGACTCTTATCATCGAGTTCAAA
AAGCCATCTTGGATGACCAATCGACCGCATATCATTGCTGTACCGCATGA
CtccaaaatcaaagaaatcgaCATGACTATGGCCATTGatttaaacaaac
aaaaaaagaaccaaTTAACAATGGGTCTTACTCAAGTCCAGCGCAAAGAA
GCGCCGTTTCCTTCAAAATGCATAAACGGTGGAAGAGATATTGACCTTTT
GCCTGGCATCTATGCTAGACGCACGTGCGCCGAAACGCAGATTCacacaa
atattttcaaaaaatgtggtGATACAACAGACTATATGAGACCGTATATC
CAGAATGCTGTCTCACCAAACAGAACCAGATTCACCAACATGACTGAAGT
GACGAATTGTATTTATGCTAtgagtgaaaatttaaaagctACCTCGTATA
GTACTGGATGTCCTTTCCCGTGTCGTGAGCTTGAAATCGCGACGTTCACG
CACCACGCAGAATGTGATGAAGATACGGAAAGATATATTAGTAAGGACAA
CGACTTTTATTATCAAGTTGAACTTCAGTTACAGAATGTTGATTCGTATA
AAATCATGGAGGAGAAAGAAATGTATCCATGGGATCAGATGGCTTGTGAG
ATAGGTGGATTCCTTGGTTTAGTGATGGGAGCTTCAATGTTATCCATGAT
TGAAATCATAGCGTGTACTTGGTTTTATGGTATCAAGAGAGGGAAGTATG
GTGGAAAAAACGAGGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063460-exon-scaffold_39-1491911889:329816..329900 | TCONS_00063460-exon-scaffold_39-1491911889:329816..329900 | Clytia hemisphaerica | exon |
| TCONS_00063460-exon-scaffold_39-1510915933:329816..329900 | TCONS_00063460-exon-scaffold_39-1510915933:329816..329900 | Clytia hemisphaerica | exon |
| TCONS_00063460-exon-scaffold_39-1575043694:329816..329900 | TCONS_00063460-exon-scaffold_39-1575043694:329816..329900 | Clytia hemisphaerica | exon |
| TCONS_00063460-exon-scaffold_39-1491911889:330863..332356 | TCONS_00063460-exon-scaffold_39-1491911889:330863..332356 | Clytia hemisphaerica | exon |
| TCONS_00063460-exon-scaffold_39-1510915933:330863..332356 | TCONS_00063460-exon-scaffold_39-1510915933:330863..332356 | Clytia hemisphaerica | exon |
| TCONS_00063460-exon-scaffold_39-1575043694:330863..332356 | TCONS_00063460-exon-scaffold_39-1575043694:330863..332356 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_39 | supercontig | scaffold_39:329816..332356 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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