TCONS_00063583 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063583
Unique NameTCONS_00063583
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2791

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063583 ID=TCONS_00063583|Name=TCONS_00063583|organism=Clytia hemisphaerica|type=transcript|length=2791bp
aaatttagaaatgtGATAACTTTGATTTCGAGAAAATAGAAGAAATCTAG
AGaattaaattatcaaaaaataaaatcaaagaatagAACAACCTTCAAAG
GTACACACAGCTCAATCTGCCATTATGTTTTATTGCAACATATTTGAGAA
TCACGATGGCAACAAGAAGAACCAATCAGGGACCAGTTCATCTTCAGATG
AGGAATTTTTTGATGCGcagcaaaatttgaagttgGATTCGATCTCATCA
ATCATGGAAAGCAcgaaagaacaaaagaagaaagaacCCATTCAAGAGGT
ACTTGCATGTGGCAAACCATACCCAATGGTGGTACTTCCAGTGGAAGGTG
ATTATTGGATGGAGGGGACGTACCATATCCTATCACGTGATATGTACGAT
CGGCCCATCTTCCCGACTATCGATCGTAGTCGGTGTGTCTTGGATGACGA
CCAAACTGTTTATAATTACCGAAGAAATTTCGCTGGAAAAGAACATACAA
ATTACGTCGGCAACGATTCTAAGCATGGTCCAGTCCTGATGTCTGTTCTC
CTTGACTCATCCCAACCCGTATCCGAACGTCCCGCCCCTAGTCCGCCATC
CGCCCAAATGGCAAACCCCCCTCAACGCCCTAAAGAACAATTCAAAGTGA
TTTTACGTTTGAAGAATAAAACGATCGAAAAAACGATATCGCCCTCGCAT
TTTTCTTCCGATTGTCCGGGACCGAGAGAAATTATGAAGTATATGCTCGA
AGATGATGTGGACGTTGACCGATTCCATCCAGTCGTCGTACCGCGTGCTA
GCGAAGAAATTATGCGCTTCGACGAACACTCTGTTTCCAACTGTTACAAA
ATTGGAGTTCTGCATCAGAAACACGGACAGATTTCAGAAGAAGATTATCT
CCAAAATCCCGAAGAAACGCCAGCTTTGCGAGAATTTTTAGACTGCATTG
CAGATCGAGTTGATTTAAAAGATTTCGAGAGTTACCGAGGTGGCTTGGAT
GTAAAACATGGGCAAACTGGAGAACATTCGTATTACACTAATTATAAAGA
GAGAGAAGTGATGTTCCACGTTTCATCCATGATCCCTTACAAACCGAACG
ATTCTCAACAACTCAGTCGGAAACGTCACATCGGTAATGACGTCGTCAGT
ATCGTCTTCCAAGAAGAAAACACGCCGTTTTGTCCGAACTCGATCCGCTC
GCATTTCCTACACTGTTTCATCGTCGTTCAAGTAGAAAACCCTAACTCAG
AGGAAACCTATTATAAAGTTTCAGTGGCGGCTAAAGAGGGCGTTCCAAAA
TTTGCGCCCAGTCTTCCGAACCCTTGCATATTCAAGAGAAGCGACGAGCT
AAAGGATTTTCTGTTGACAAAGATTTTGAACGCTGAAAATGCGGCTGTCA
AAAGCGAAAAGTTCTCAGCTCTAGCGGAGCGTACAAGGAGTATGCTTTTA
CAAGGAATAGTAACCGACTTCATCGCCAAAAACGAGAAGATGTTGGATGA
TGATAATCTCTCGAACGGTAGCGACAACACAGATACACACCACGTCAAAT
CTGGAAGCTTCTTATCCACGTTCCGGTCTGCAATTTATCGATCGTCACAA
CGTAGCGAGCAAGACAATATCTCGATATCTAGTAGCTCTAGTAGTCTCCC
TTCAACACTAAATGGTAGTCACTCACTTTCGTTGAACGATTTGAATAACT
TTGATAGTGAAGAACACCGAAGAAAAGATATGTCTATGTCAACAAGTCCA
CGTCCAGGGCGAAAGACTAAAAAAGACAAAGACAAACATAGCAAGAAAGA
TCGCGCAAAAAGTGCAATCTTATCAATCCTTCCGCCCGTCTCTCATCCAA
TCAGCGAGCAGGATTTTAACGACTTAGCATCACCAACTCTCCTTCAAATC
TCCACAAAACAATCACCAACTTCTTCCAATTCAAATCTCAACGAGCAACC
AACGTCACGACCGCGCACGCGCAGTAAATTTTATACTAACCAATTATTTG
ACGAATTCGAAGAGCCAGTGACGTTGACATCGACCAATCAGATTTCACCA
CGTTGTCACACCATGAGTGGTGGAGAAACAAGAAAAGAAAATGGTAGTGA
TCCATCCATACAGCAGCCGAAAATCAGTATCACGGCAACCACGGTGACTA
GTTCAGACGAGGAAAATAATAACGCGAACGACCCTTCACCTTCATCTAGT
TCTTCTACAGATACAGCCAAAGAGGAAATTGAGAAATTACGAGCGGAAAT
ACATAAACTGAAAATCGACAAAATGGATCTCATACGGCAGAACgtgATCC
ATCAACGGGAGATTAAGAAATTAAACGATAAAACGCAGACCAACGGTGAT
TATCGTTCTCTATCACTCAAACATTCGTATGACCCGAGAAAAATGTACAA
CGCAACTGCTACTACGTTTGCCGAGTTTGTTTGACCACGACTGATGTTGA
ACACGCTAGAATGAAAATgatatatttttgtgaaatgacAGATATAGTCA
TCAGTGATGTTAGATTTCTGCATTTTTATCTTTGTTAAACTAGTCCCGAT
AGCGATAGGCCAACcgtctttttcaaaaaatgtcataacatttgaaaaaa
aaatttcagaaatacGCCATTTTGCTGCAACTCTTGGGTTTGATGATAAA
TTTTGTTGAGTTATATATCTACCAAATTAATTAGGCTTTTACCTTTCTTT
TGTAAATATCTTTataattttgctgacatcaacATTTATATTTTCTATTT
AGTTTGTGTATTTATTTGATATAAAAATGATAATATGCTTG
Run BLAST on NCBI

transcript from alignment at scaffold_394:41919..55730+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063583 ID=TCONS_00063583|Name=TCONS_00063583|organism=Clytia hemisphaerica|type=transcript|length=13812bp|location=Sequence derived from alignment at scaffold_394:41919..55730+ (Clytia hemisphaerica)
aaatttagaaatgtGATAACTTTGATTTCGAGAAAATAGAAGAAATCTAG
AGaattaaattatcaaaaaataaaatcaaagaatagAACAACCTTCAAAG
GTACACACAGCTCAATCTGCCATTATGTTTTATTGCAACATATTTGAGAA
TCACGATGGCAACAAGAAGAACCAATCAGGGACCAGTTCATCTTCAGATG
AGGAATTTTTTGATGCGGTAAGTCTCCATAGTTCCGGTGTACATTTCCGG
TAATCATCAAAGCAAATTTGTTTTCTCCCCGCTCTGTAATTGGAATAACT
TGTGTAGAAACCAGCCCCTTGGAACAATAAGGTATGGTGAAGGCTAGAGT
CTGTAATCTCCTATGTAGAATTTGAAACTACATAAGTTACGCGGCCTGCA
TGTCTGTACTACACAATAGTACTACTACAAAGGTAATTGGAATAGTTTTC
AATTTGCCTCGGAGAAATAAATAAAGTATTGCCGAAGGCTAGGGTCTGTA
ATCTCCTATGTAGGATTTAAAACTACATAAGTTACGCGGCCTGCATGTCT
GTACTACACAATAGTACTACTACAAAGGTAATTGGAATAGTTTTCAATTT
GCCTCGGAGAAATAAATAAAGTATTGCCGAAGGCTAGGGTCTGTAATCTC
CTATGTAGGATTTGAAGCTTCTTTCTACATAAGTTGCACGACTACGTGGT
TTTCATACAAATGCTAGATTAGAAGTAACATTTATCgccagaatttgaaa
aatgtaaaacgcaaaattaaagaaaatgcttaATTCAATCCATCACACGA
cgcaaatttcaaagttttactttttcttgtaTGTGAAAGGTTGGCCTATA
TCCTTCGGTTTGAAACCCAATGTCTCACCACCACAGAGCCTGGATTGTTT
AAGACCAAGCAGTGTCCATGACCGAATgatctttacatttttttcaagcT
TTTCACTCAATCATCACGCAGGAAAACCTTTCAGTTGAGTTTAAAAAAGG
GAAACAATATCAGATTTAAGGTATTATTCAGTTGTGGGTGGTTTCTATTG
TCGTTGTTACAAAGTAACAGGTAATGCTGTTTAATGCTTTCTGTTTTTGT
CGGAAACTTTGTTTACATTATCAAAgagatttttataagaacataaactG
CCCCACAAGTCTCCTTGTTCGATTCTTATTTTGGTTTCTTGATTATCTTC
TCTTACGGTAAGAGCAACTTTATTTTCCATTTGACCTATCAATGTCGGTC
AAACCACCACAATACTGAGGCCTTTAGTCATCAACTTAGCCACCTGCGAT
TCTCACCAGCTATCCATCATAACTATAGTCCTATAATCAAGTGAttcttt
gaacattttcttaTAGTTCAAAGTTTATTTCTTAGAAGAAATGTTGTTTT
TCGTTTGTTGTTTTTGAGTGGATGTTATAGCTCAACGCTATTCAATACAT
ATAATGTAAAATTCAATATAACACGAAAATTGATATTTCCTCTCAAGGCA
TTCTAGCCGCAGTGTCAATacttttttgccgacttttcttttcatttgat
ttAGATTTCAAATTTAAAGTGTATAATTTTATCCTTTGAACTTTTCTTGT
TGGATTTTATTGGTACAGCATATTGGTGCTGGTTTTGATATAATTTGTGA
GTTCTTTTCGTTCCGTGGACGATGGACGGTGGTCTTGACAAAATGACAAT
AATCataaaatagatttcatttggTCAATCAAGTTCTAATCAAGCAATTC
TCACAAATTTGCAGTAAACAAATGAGCTTAATTTTCTCCAGCGTCATGCT
TGCATAAAAACAAGATTGCAGTCAATCCAGAACTAAATCATATATTTACT
ATTTACTGACCGGTAGTCCTTGGAGATTCAATTTCCATAGATGGTGGTTG
ATTGATTTTCCCTTTTTCCTCCGATTTGATTTAAAACAATCAATCCTTAC
TTTAGATTTGCGCAAATAGAGACGCAAGTTGCCAATTAAAATCCAGATGT
AATCAAAGACAAAAATATCGTCTCCATACCGATGAGTATTTCCACGCTCA
TCGGCTGCCTCGTTTCCATGCAGTATTAGTTTAATTAAGTAATTAAATTA
TCTTGAAATGAGTTCCAATTACTGGATATATTTTGTACTTAAACACCATC
CTGGGCTAATATTTCTTCGGCCTGTTCATTCTTCCGCCGTATTTAATTTG
CCGTGAAAGTAAAAGGGTATTAAGTTGCCGTGACAGTCGAAATACACCAC
GAttgtgttatttataagaaagaGAAGAAGTCTTTAATTGAATTTAAAGA
TCACACGCTTATTTTCTAATTCTACTGAAACTGTCTTGAAATATTGTAGA
ATGTGCACATTTGAGAAATAATGCTTTGTCAAGAGACTTTGAATCATTTA
AACAATGTATTTCATCTTAGAAAAACTCCAAAAAGAATACCAAAGGGACA
GTACTGCAAAGAGGGGATTATTGTCTCTAAAAGGCAActtaaaaagctga
aaaagccataatttattgaaaattaacatattcttataaaaagtgaagaa
agcaaaaagaaaggaaatttgCTCAATAATGTGTCATTAATTTGTTGGTT
AGGCATTATGTAATCAGTTAATaagatttttgtttcttaattGTTGAGGA
GACGGCCGAACGACCGAATGAGGTATCATGGCAGAGGAGTTTTCttattt
ctgtaaaaaaaaaatttgttaatGTTTTTTCCCTTTCTGTTGTGGAAGTT
ATATATTTTGTCGATTGGTTTGTCGACTCGATTGTGTGGGGATCTcgttt
gcttctttttttattgtttttttgtcattcaatttaGTTGTCCTTTGATT
GATTGGTTCATCATGGCATTTAGTTTGACTCTCgggatttttaaaaagtt
tgacCAAATTTAAAGTGTTCTTTTTGTCAAGACATGTTTCGTTGAATATT
GTTTGTTTGGACAAATCAGCGTTGGCGATAAAGTGCCCCTGTGAAAATTA
TGACACCGTCCAAAAAAAAGTACTGGCAAAGCTGAATATTAATTCGATTG
GGTAATGAACATTACAAGGAGAAAATAAATTGGTTATTTTGTAATAATGG
GGTTCTTATTGACTAATGTTGTAACTTTTATGCAGATAATCGTTTTTGTT
GCTATTTCTTTTTTGTCGATTCATGTCATTTTGAAAGTGGCACTTGACAA
TTGGTCAACATTTGAAAAAGGACTTACTCTGAGATGGAGTATGATGCTTG
AGTGTCTTTCTATATATTTGTGTAACAATGCACTCTGTTGTAGATGTATT
TTAGTGGACCTCTTGTACCTGTCGCTACAGTCTTGAAAACTTCCTTCAGA
TATCTTCTGACAATTGACAGAGCGTTTTGATGAAGCAGTAGCATTCTTAA
ATGTGACTTTGTTTGGGATGATATCATATGATCGAAGTTTTCGGAAGATG
CTTTACCCATGGGTGGCATCCTGCCTGTTTAAGAAAAGTGGAGAATTATT
GGAACGAAGCATTCTTTTGAATTTCATAATTGAAACATATTTGAACCGAT
GGAATCTCGGTGAAACGCGTCATTTTATTGTCATTCGATGATAACTTTAT
ACATGGTAAAGATAAAGAAATGAGAtggatttgttgattttctgattGTT
TCTGTTCGTGTTTCAAACACCTTGTTAGCACACTATATCATATGTGATAC
ATCTTCTATGCGTGTTTATGTAAGAAGAATGGTTGGATATGATTTTAAAG
TTATATGGATGTACTTATGTTATTAGGCTTTTTTAgttgttttgtgtttt
gagTTTGAAGTCTGTAGAGCCTAAGTGAATTGACATCAAATGTCTTCGTA
TGGTATTAAAAATGGTTTGGGGGCTTGTAAGCTGTAGGATTTGCAACCCT
CACACGCATTGAGATGATAAATCGAATAGTTTTCTTGTGGATTTTGTGTT
GTGTTGTGGTTTTCGGTCAATGAATCGACAAACTGGACAAAAAAGGGACC
CGCCCCCCCCCATGGGAACTCTGATTATTTTTATGAATGAATGTTACTTC
ACTTTCGTTATCCATTATTCATGATCTTAATTTCTcgtaatgattgtttt
tcattttgaagacaGAATACTTGAATATTcaaaaaaacataagaaatttg
aaacaaaacagTTATAATATTTATAAGGAGAAGAAGTGTAACAACAATTA
TTAgaaattattgttttgatgGTTTTTGGTACATTTTGGATTGCTGCAAC
AGTCTCTGTTTGAAGAGCTTTTCAACAAATCCATTTTCAGCTGGGAATAT
TATATTGTATTGTTGTGAAAATTGTGTATTTCCCAAATGAAAATGAGATT
TCGAAGACATTCTGCCCCTTTGGGCATTTTATATgaggtatttttttcat
ttaagattTGTCCTTCTATCAatatttgtttaattttatagtatgtgatt
attttttgagttttggtCTTAAAGTCATCAGTTCTCAATTTGTTTAAATG
GATAGCTAGCCTACAGATTTCTCTGGAAAACCTTATCAAAAGACTTTTAT
TGTTATTGATACtaattttatacatttttatttCGTATCAGGGGGTTTat
aattttgttattttccTCAATGTTTAGAATTCGTCGATCCTTTTCGATTC
TATAAAATCAGAATGTTCCCATCCttgagtttgaaaaatattgttttgaa
gTGATTCGTTTGAAAGCTTATGAGATAATTGGAATCAGGAAAGTGTAACA
TAATCCTTTTTCCTGAAATATCAAACACTGATATGCTTCACATATACCGC
CAATGTAATCGAATTTGACATTGGAAATTCATCCAATGGATAGTCTcaac
taatgagaaaataactGTTTTCCCAGTATAATGATGTAATAAATATTCCA
CTCATGAATATCTTATCAACGATCTTTTATATCTTTAACCAATAATTTAT
AGATTTTTAGATATTAAGGGATAAGGTTGAGGGAGGCCATCGCTTTTATT
CGAATCAAAGAAAGCTTCGAATCAAAGAGGCTCAActttgaaagaaagaa
acatTGTTAAATCAGCTTCGTTAATTTAAAGTTTTTCCATTTTCGTTTCG
TCCCTGATGCGTTTATTTTTCATATATCCTTCTTTCTCTACAgcagcaaa
atttgaagttgGATTCGATCTCATCAATCATGGAAAGCAcgaaagaacaa
aagaagaaagaacCCATTCAAGAGGTTGGTTTTATCATTTGCCTGGTTGT
TTATTTGTTCGGCGGCAGTTTCATCTAGGGGGCCAATTCTAGGTCGtgga
aatggaaaatttttacCAATAAGATTTTCTTTGGccatttaaaagatttt
gtcaacaagtggtttttttgtcactttttcccAACGAAGAGGGAACGACC
GAACGATAAATGCATAATGCACCTCAAAGTAAACGATTCGTTAGATTGCC
TTGACTCACGAGAGTATAAACTTGAACGGAATATTGTTACTAAATcagac
ttttgaaaaattccccatcacaaaaaattttgtacaattttttgttaata
atGATTGCTTATTAAACCCGTCAGTAACGACTCCCCGTACACAGGAAGTG
TGAAGGTTGGTCGAACGCAAAACTCATTTGTATCATGTATCACCCACAAT
TATGATGTGGTCGGATATAGTATACCAAAATGAGATTCTTTGACACTATT
ATTATATATAGCGGCTTATGATTAATGGCGAAATTgcttttaaattaatt
tttggaaagtcAATTGTTTGACAACTTCTACACATGAAACTGACCATTTT
TTTGGAAcaaaattttttgggaaatattttttctcctaACGTCAGCTCTC
TTATAGTCAAATTTTATACGTTGCCTGATCCTGTAGCTAACCTGTATACG
GGATACGTTGATAAGATACCTTTGGCTGAACCATAAAAAATTAATAGTTC
CCAAACTATGAATTACAATCTTCTAAGAAAAGTTGATGTTTAAGAGTCCA
TGAAGCATTCATAAAACGTTTCTGTTTCAATGTAGGTACTTGCATGTGGC
AAACCATACCCAATGGTGGTACTTCCAGTGGAAGGTGATTATTGGATGGA
GGGGACGTACCATATCCTATCACGTGATATGTACGATCGGCCCATCTTCC
CGACTATCGATCGTAGTCGGTGTGTCTTGGATGACGACCAAACTGTTTAT
AATTACCGAAGAAATTTCGCTGGAAAAGTAAGTTTTTATTATGTTACTTG
GATGTTCAAGTATCTGAGCAAAGTTGTTCAAAGTTCGTTGCCTTCAGAAG
CACTTTTTTATGAACACAAAAAACTGAGCATTGTATTGTAGGTATCGATT
TTGATCGTTATATCTTGTTAGAATATACCAAGCAAGAAGATATATTACTT
CAGATCAATCTGGATTTAAAGAATATTTAATATTTACAAACTTTTCGATG
CCTGGTTTATTTTccaattatttaattttttcatttttaaacttCTTCTC
ACTTTATTTTCTTAGGAACATACAAATTACGTCGGCAACGATTCTAAGCA
TGGTCCAGTCCTGATGTCTGTTCTCCTTGACTCATCCCAACCCGTATCCG
AACGTCCCGCCCCTAGTCCGCCATCCGCCCAAATGGCAAACCCCCCTCAA
CGCCCTAAAGAACAATTCAAAGTGATTTTACGTTTGAAGAATAAAACGAT
CGAAAAAACGATATCGCCCTCGCATTTTTCTTCCGATTGTCCGGGACCGA
GAGAAATTATGAAGGTATGTTATAGCtaagaaatatttcatttcaattca
aGTTTTATAGGTGATGTAcataaatttcctttttttgaaatttgagtgTT
ATGGAAAAGGCTTTAAAGGCTTACTTGGCTACAAATAATCATTTGGGTGG
GAATTTCGTCATCTGACTTTCTGACGTATATGGAATGTTTTAAACTTTTC
TACAAAAGAAATCATAATTTCCAATTCTCCCTACAGTATATGCTCGAAGA
TGATGTGGACGTTGACCGATTCCATCCAGTCGTCGTACCGCGTGCTAGCG
AAGAAATTATGCGCTTCGACGAACACTCTGTTTCCAACTGTTACAAAATT
GGAGTTCTGCATCAGAAACACGGACAGGTCAGTTCTCTTaattgtcaaaa
taaaaatatgcatCTCAAATAAAAGTATTCGGGTTGTTGCTGTACTGCAG
CCTTTACTAAAAAGCTCCACGAAAACGGCTAAATAATACAGTAGTTCCAC
ATTAAATACTTATATTATGCATTTACGATTATCTTTAAGCTatcataata
taatataataaagagttgacacaatatctttgtttcaaactcagagtttc
atggtgcacaggcaccaatcttcagtgaaatatcTTTAAGCTATCAACTT
TCCTGATTAACGTTTAGTCTGGTTTTCAGGAAGAAACATGATTCCATAAG
TCTGATTGACACGTTTCTTTTGTCAGACTTCTGAAAACGAATAGGTGCCG
TCCTGGGAGACGTAGCTCTTCCTCTGTTCTGAAAAGTCTTTGAGGAAAGT
CTGCGTTTTTGAGCCTCTGATTCTTTAAATCTTTCTTTTAATCCTCACTT
CCTCGCCATACTTGACAGCTTCAATGCTGTATTTATCGTTCAGAtcattt
aacaattattttcatcattattatcTCCATTAGATTTCAGAAGAAGATTA
TCTCCAAAATCCCGAAGAAACGCCAGCTTTGCGAGAATTTTTAGACTGCA
TTGCAGATCGAGTTGATTTAAAAGATTTCGAGAGTTACCGAGGTGGCTTG
GATGTAAAACATGGGCAAACTGGAGAACATTCGTATTACACTAATTATAA
AGAGAGGTAGGTGGTTTGGAACTAAATCTTGTTAAACTACTTCAAGCATC
ACCGAATACTGGCATATTTAGACAAGCAATAACTACCAGAGATGGAGTTA
GTTGAGCGACTAAGTACAACTTTTAGAAGTTGTTATAATATCTCGTTTAA
CCAAGAAAGTATACAGCCAACTTTTTACTTGGTGTCCTTTCTATTCGACA
GTCCAAGAAgttaaaattgttttcttttatcatCTTCCTTCCTTCATATA
TTTCTTTAGAGAAGTGATGTTCCACGTTTCATCCATGATCCCTTACAAAC
CGAACGATTCTCAACAACTCAGTCGGAAACGTCACATCGGTAATGACGTC
GTCAGTATCGTCTTCCAAGAAGAAAACACGCCGTTTTGTCCGAACTCGAT
CCGCTCGCATTTCCTACACTGTTTCATCGTCGTTCAAGTAGAAAACCCTA
ACTCAGAGGAAACCTATTATAAAGTTTCAGTGGCGGCTAAAGAGGGCGTT
CCAAAATTTGCGCCCAGTCTTCCGAACCCTTGCATATTCAAGAGAAGCGA
CGAGCTAAAGGATTTTCTGTTGACAAAGATTTTGAACGCTGAAAATGCGG
CTGTCAAAAGCGAAAAGTTCTCAGCTCTAGCGGTAAGTTTATGACTGACA
TTGATTAAGTCTAAAAGTTATAATGATGTAGTTTTCTTTTATTATGAGGA
CTTATTAGGAAATTCTCCTCTTAAATTTTCTCACACTATCAGGATGTTAA
TAATTTAAAATGTATTTGTTAAAGCACGTCTTAGTTCACTGTATTATCAc
ttctgatagcgctcacgaaAGAGAATCTTTCGaaaaaatgcgaaaaaaaa
GCGGCTCTGGTGATTGAATAAAGATCCGATTCTTAAACTTGCTTTTCAAC
CTGTTCATTTCAACAGGAGCGTACGAGGAGCATGCTTTTACAAGGAATAG
TAACCGACTTCATCGCCAAAAACGAGAAGATGTTGGATGATGATAATCTC
TCGAACGGTAGCGACAACACAGATACACACCACGTCAAATCTGGAAGCTT
CTTATCCACGTTCCGGTCTGCAATTTATCGATCGTCACAACGTAGCGAGC
AAGACAATATCTCGATATCTAGTAGCTCTAGTAGTCTCCCTTCAACACTA
AATGGTAGTCACTCACTTTCGTTGAACGATTTGAATAACTTTGATAGTGA
AGAACACCGAAGAAAAGATATGTCTATGTCAACAAGTCCACGTCCAGGGG
TGAGcttttctcttattttcttCATCAACCGATATTAATGGCATGGAACA
CACCCCTTAAATCTTTATCAAAACATTACTTGGTGTGTGATCATTTAATG
AGATGTTTTGCCAAATAATACCTTACAGAACGTAAATTTGGCTACAATTC
CAGCTCGACTGGTTGACTCTGTAGATTTGACAGGCCCCAcgccatgaaat
tgaaagtggggggAGGGGGCAATGAATATAAAGTCTAAAGAGGCGcaacc
aaaaatttttactttgtaaaaaaggggggggggcatggccccCTCTGGTC
CCCCCGGTGGCGTGGGcccttgaatttcaaatttgtttcCCATTTAACAA
ATTCAATTTGAatcttaaatttcttattgGTTTTCAAACtctaataatat
tttttacctATTTTCTCTTTCCAGCGAAAGACTAAAAAAGACAAAGACAA
ACATAGCAAGAAAGATCNGGATGTTAATAATTTGAAATGTATTTGTTAAA
GCACGTCTTAGTTCACTGTATTATCActtctgatagcgctcacgaaAGAG
AATCTTTCGAAAAAATGCGAAAAAAGCGGCTCTGGTGATTGAATAAAGAT
CTGATTCCTAAACTTGCTTTTCAACCTGTTCATTTCAACAGGAGCGTACA
AGGAGTATGCTTTTACAAGGAATAGTAACCGACTTCATCGCCAAAAACGA
GAAGATGTTGGATGATGATAATCTCTCGAACGGTAGCGACAACACAGATA
CACACCACGTCAAATCTGGAAGCTTCTTATCCACGTTCCGGTCTGCAATT
TATCGATCGTCACAACGTAGCGAGCAAGACAATATCTCGATATCTAGTAG
CTCTAGTAGTCTCCCTTCAACACTAAATGGTAGTCACTCACTTTCGTTGA
ACGATTTGAATAACTTTGATAGTGAAGAACACCGAAGAAAAGATATGTCT
ATGTCAACAAGTCCACGTCCAGGGGTGAGcttttctcttattttcttCAT
CAACCGATATTAATGGCATGGAACACACCCCTTAAATCTTTATCAAAACA
TTACTTGGTGTGTGATCATTTAATGAGATGTTTTGCCAAATAATACCTTA
CAGAACGTAAATTTGGCTACAATTCCAGCTCGACTGGTTGACTCTGTAGA
TTTGACAGGCCCCAcgccatgaaattgaaagtggggggAGGGGGCAATGA
ATATAAAGTCTAAAGAGGCGcaaccaaaaatttttactttgtaaaaaagg
ggggggggcatggccccCTCTGGTCCCCCCGGTGGCGTGGGcccttgaat
ttcaaatttgtttcCCATTTAACAAATTCAATTTGAatcttaaatttctt
attgGTTTTCAAACtctaataatattttttacctATTTTCTCTTTCCAGC
GAAAGACTAAAAAAGACAAAGACAAACATAGCAAGAAAGATCGCGCAAAA
AGGTAGGATGAAACCAATAGCTTATAATTCATgataatttattcaaaaaa
atagtTTAGGCTAATTTTTCCATAATATATGAATGTTGATTCTTCTATTC
ATGATTCAATCCATCAATCGATGAATGCAACGAGTTCGATTTGCTTCATT
CAATTCGCGCATtggattgaatatttttttgacaaatatcAAGAATCAGA
AAAAGGGTGCATTGATAAGTCTTGTGCGAACAGAAGAAATTTAGTTTGTA
AAGTATTTCTTGAAACATGAAATATCTTTGACTGTTAGTTGCTTCAAGGT
TACTTTCAATGAGTTTTCTGCACTTTGAAACCAAGACGCGCTCAAATgta
gaaaacattattttcttttttttttgaaaagtgcacTAGTCACTACTCTT
GAAGTTATAGGGTTAAAGAACaaagattttatctttttaattttcaatat
tttttatttttttcactaaatTCCAGTGCAATCTTATCAATCCTTCCGCC
CGTCTCTCATCCAATCAGCGAGCAGGATTTTAACGACTTAGCATCACCAA
CTCTCCTTCAAATCTCCACAAAACAATCACCAACTTCTTCCAATTCAAAT
CTCAACGAGCAACCAACGTCACGACCGCGCACGCGCAGTAAATTTTATAC
TAACCAATTATTTGACGAATTCGAAGAGCCAGTGACGTTGACATCGACCA
ATCAGATTTCACCACGTTGTCACACCATGAGTGGTGGAGAAACAAGAAAA
GTAAGCTTTCTTTCAAATTAACGTGTTTTGTCATTTAAATTTTGCttatt
aaatttatttatttcgaAAGGTAAAATTGTCCAGCCgataatttgaaaag
aaaatcctcAGATTTAGTGGgaacacaggaacgcgggaatagtgcttata
aagagctcttatgaaaaatagaaattgccatGGGAAGAGTGGTTTGGAAT
GACattgtattcagtgaacatatagacATAGATCCTAttgcaagtttaat
ctgcagcgaaatacaacgacgtggtttaatAGTCTATAGATTTAGAAGAA
GATATTCTGAAAATTATTCTTAGAAATTCAGGTCTAGAAAAATCGACAAC
TACTGAAAAATGATCCTTGACATGAATGAAGTTATGGATCAATATAGGCC
TGCTAATGGTCAGATTTTTTGTAGTTGGAATTGGTAAAAATTATTATCCT
TTCTCGTTCACTTTTTCCATCAGGAAAATGGTAGTGATCCATCCATACAG
CAGCCGAAAATCAGTATCACGGCAACCACGGTGACTAGTTCAGACGAGGA
AAATAATAACGCGAACGACCCTTCACCTTCATCTAGTTCTTCTACAGGTT
AGTAATAAACATTTTTCTTAAACCTTATCCTAAGATACTTTAATTTGGGA
GGGGGTATTTagaggtacaatttccaacGCCCTGgcaattagcccccccc
cccagtgtaCTTAAGTTTGAACATTTTAAAACCcttctaaaagttttttt
ctactGGTAGAAAGTGAGCAAAACCATGAAACTAAGGTTCGGAGAACAAA
TTCCCACCTACTTAAAAAGTGTACCGGAGCACTGATTCAGCGTTTGTCTC
GGGTTTTTCTATAGCTAtcactaaaaatttctcttggGTCAAACATCTAA
ATTTATTTTAAGTTGAAGGAAATGGTATATAATTACTGTTTCACGGTGAA
ACAgctatttaaaatatttaaataaaaacaaagtttccTATACTTCTGAC
GTCTTACTTGCGTTTATTGTGTCTGTGTTGCCAATAGTAAAACACACATT
TAGACACCCTTTCTAATTATCATCGTATTTTTTTTATAGATACAGCCAAA
GAGGAAATTGAGAAATTACGAGCGGAAATACATAAACTGAAAATCGACAA
AATGGATCTCATACGGCAGAACgtggtgattttttttttataaacgtCAG
CATTTTTCAATTTGGTTCAGTTGCTTTCCTTATTTTAAACCCATTAAGTA
CCATCACTCCgtaacttcaaatttttgatttaaaatgcgTGTACACGCCC
CAATCAAGGAAAAATCCCCATCTCGACTTTTTTTATACGGGcgaagtaaa
aaaaacaacaggCACACTGCGCTCTTAACTCTAGACCGACCGGTACAGgt
ccgagaaaaaaaattgagcgATCTCATATTATACCAGTTGCACTTAATGG
GTTAATGGAGTATACAGgaaataatgttttgatttaaatacGCATGATGT
TTGAACACTGAAATAACTGATTGTAGTTCACTTAAAAAATGTCGACTTTT
ACAACGAGCAGAGAACGTGAACTAAAACAGACAATGTACAGAAATTTTCC
TTACAAAACCAATGTTAACTTGACTTGACCACTGACGCCGACGCTGACCa
gtttacagaaaaaaaaacttataaaacacatcaaaagacaCAATCTGACG
AACATACTTTTGCAAAACACAAAACGAATTATTCCTAAAAgtgaaaagtt
caaaattttgattttattagaAATTGAAAGAACAAAAAAAGTCACGTCAG
CCGAAACAAGCGTGGTCAGGTAAGATAACCTTGGTCTTTTATATAATACA
ACCTCCGGTGCCGGAGGTTTTGTGGAGAAAGTGCCTAAGAAATTTTGCAT
GACTTAAAAAATTggcctaaaaattgaaattctaaaaacaaCTAACATGC
GTCAATCACTGCCTGCTCAATATAACAGATTACATAAATGTTTTACGAat
ctatttttctatttcagATCCATCAACGGGAGATTAAGAAATTAAACGAT
AAAACGCAGACCAACGGTGATTATCGTTCTCTATCACTCAAACATTCGTA
TGACCCGAGAAAAATGTACAACGCAACTGCTACTACGTTTGCCGAGTTTG
TTTGACCACGACTGATGTTGAACACGCTAGAATGAAAATgatatattttt
gtgaaatgacAGATATAGTCATCAGTGATGTTAGATTTCTGCATTTTTAT
CTTTGTTAAACTAGTCCCGATAGCGATAGGCCAACcgtctttttcaaaaa
atgtcataacatttgaaaaaaaaatttcagaaatacGCCATTTTGCTGCA
ACTCTTGGGTTTGATGATAAATTTTGTTGAGTTATATATCTACCAAATTA
ATTAGGCTTTTACCTTTCTTTTGTAAATATCTTTataattttgctgacat
caacATTTATATTTTCTATTTAGTTTGTGTATTTATTTGATATAAAAATG
ATAATATGCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039855XLOC_039855Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063583-exon-scaffold_394-1491911889:41919..42135TCONS_00063583-exon-scaffold_394-1491911889:41919..42135Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1510915933:41919..42135TCONS_00063583-exon-scaffold_394-1510915933:41919..42135Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1575043694:41919..42135TCONS_00063583-exon-scaffold_394-1575043694:41919..42135Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1491911889:47062..47142TCONS_00063583-exon-scaffold_394-1491911889:47062..47142Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1510915933:47062..47142TCONS_00063583-exon-scaffold_394-1510915933:47062..47142Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1575043694:47062..47142TCONS_00063583-exon-scaffold_394-1575043694:47062..47142Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1491911889:47954..48145TCONS_00063583-exon-scaffold_394-1491911889:47954..48145Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1510915933:47954..48145TCONS_00063583-exon-scaffold_394-1510915933:47954..48145Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1575043694:47954..48145TCONS_00063583-exon-scaffold_394-1575043694:47954..48145Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1491911889:48434..48682TCONS_00063583-exon-scaffold_394-1491911889:48434..48682Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1510915933:48434..48682TCONS_00063583-exon-scaffold_394-1510915933:48434..48682Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1575043694:48434..48682TCONS_00063583-exon-scaffold_394-1575043694:48434..48682Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1491911889:48905..49045TCONS_00063583-exon-scaffold_394-1491911889:48905..49045Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1510915933:48905..49045TCONS_00063583-exon-scaffold_394-1510915933:48905..49045Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1575043694:48905..49045TCONS_00063583-exon-scaffold_394-1575043694:48905..49045Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1491911889:49602..49774TCONS_00063583-exon-scaffold_394-1491911889:49602..49774Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1510915933:49602..49774TCONS_00063583-exon-scaffold_394-1510915933:49602..49774Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1575043694:49602..49774TCONS_00063583-exon-scaffold_394-1575043694:49602..49774Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1491911889:50028..50400TCONS_00063583-exon-scaffold_394-1491911889:50028..50400Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1510915933:50028..50400TCONS_00063583-exon-scaffold_394-1510915933:50028..50400Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1575043694:50028..50400TCONS_00063583-exon-scaffold_394-1575043694:50028..50400Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1491911889:51660..51992TCONS_00063583-exon-scaffold_394-1491911889:51660..51992Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1510915933:51660..51992TCONS_00063583-exon-scaffold_394-1510915933:51660..51992Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1575043694:51660..51992TCONS_00063583-exon-scaffold_394-1575043694:51660..51992Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1491911889:52418..52470TCONS_00063583-exon-scaffold_394-1491911889:52418..52470Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1510915933:52418..52470TCONS_00063583-exon-scaffold_394-1510915933:52418..52470Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1575043694:52418..52470TCONS_00063583-exon-scaffold_394-1575043694:52418..52470Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1491911889:52945..53218TCONS_00063583-exon-scaffold_394-1491911889:52945..53218Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1510915933:52945..53218TCONS_00063583-exon-scaffold_394-1510915933:52945..53218Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1575043694:52945..53218TCONS_00063583-exon-scaffold_394-1575043694:52945..53218Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1491911889:53692..53815TCONS_00063583-exon-scaffold_394-1491911889:53692..53815Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1510915933:53692..53815TCONS_00063583-exon-scaffold_394-1510915933:53692..53815Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1575043694:53692..53815TCONS_00063583-exon-scaffold_394-1575043694:53692..53815Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1491911889:54308..54393TCONS_00063583-exon-scaffold_394-1491911889:54308..54393Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1510915933:54308..54393TCONS_00063583-exon-scaffold_394-1510915933:54308..54393Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1575043694:54308..54393TCONS_00063583-exon-scaffold_394-1575043694:54308..54393Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1491911889:55236..55730TCONS_00063583-exon-scaffold_394-1491911889:55236..55730Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1510915933:55236..55730TCONS_00063583-exon-scaffold_394-1510915933:55236..55730Clytia hemisphaericaexon
TCONS_00063583-exon-scaffold_394-1575043694:55236..55730TCONS_00063583-exon-scaffold_394-1575043694:55236..55730Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_394supercontigscaffold_394:41919..55730 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.99517	8.83806	3.72858	3.07338	3.9844	1.49957	15.853	15.1634	4.75115	8.34616	2.67062	6.28413	1.54951	1.36961	3.83548	5.67883	6.35313e-09	4.484	1.47069	1.92829	0.466197	0	4.74612	2.83436	0	0.280693	1.00056e-09	0.340264	4.45568	2.45496
Blast
[Close]
BLAST of TCONS_00063583 vs. Swiss-Prot (Human)
Match: RPGP2 (Rap1 GTPase-activating protein 2 OS=Homo sapiens GN=RAP1GAP2 PE=1 SV=2)

HSP 1 Score: 335.88 bits (860), Expect = 2.446e-101
Identity = 191/471 (40.55%), Postives = 272/471 (57.75%), Query Frame = 2 
Query:  203 EFFDAQQNLKLDSISSIMESTKEQKKKEP-IQEVLACGKPYPMVVLPVEGDYWME-----GTYHILSRDMYDRP----IFPTIDRSRCVLDDDQTVYNYRRNFAGKEHTNYVGNDSKHGPVLMSVLLDSSQPVSERPAPSPPSAQMANPPQRPKEQFKVILRLKNKTIEKTISPSHFSSDCPGPREIMKYMLEDDVDVDRFHPVVVPRASEEIMRFDEHSVSNCYKIGVLHQKHGQISEEDYLQNPEETPALREFLDCIADRVDLKDFESYRGGLDVKHGQTGEHSYYTNYKEREVMFHVSSMIPYKPNDSQQLSRKRHIGNDVVSIVFQEENTPFCPNSIRSHFLHCFIVVQVENPNSEETYYKVSVAAKEGVPKFAPSLPNPCIFKRSDELKDFLLTKILNAENAAVKSEKFSALAERTRSMLLQGIVTDFIAKNEKMXXXXXXXXXXXXXXXHHVKSGSFLSTFRSAI 1585
            E  +  Q +KL+      +  K+     P I EV+  G PYP V+LP  G YW+E     GT   L   + +      + P     +  L+       YRR+F GK+H N+    S  G +++SV  + ++ +                     E  +VILR K KT+ + I P    S  P   +I K   +D V + RF+PV+ P+AS+ I+ +DEH V+N +K GV++QK  Q  EE+   N EE+PA +EFLD + D + L+DF+ +RGGLDV HGQTG  S YT +++RE+MFHVS+ +P+   D+QQL RKRHIGND+V+I+FQEENTPF P+ I S+FLH +IVVQVE P +E   YKVSV A+E VP F P LP+P +F++  E ++FLLTK+ NAENA  KS+KF+ L +RTR+ LL  +  +  A  + M     L  G +     +   G FL +F+ AI
Sbjct:   61 EMLEKMQGIKLEEQKPGPQKNKDDYIPYPSIDEVVEKGGPYPQVILPQFGGYWIEDPENVGTPTSLGSSICEEEEEDNLSPNTFGYK--LECKGEARAYRRHFLGKDHLNFYCTGSSLGNLILSVKCEEAEGI---------------------EYLRVILRSKLKTVHERI-PLAGLSKLPSVPQIAKAFCDDAVGL-RFNPVLYPKASQMIVSYDEHEVNNTFKFGVIYQKARQTLEEELFGNNEESPAFKEFLDLLGDTITLQDFKGFRGGLDVTHGQTGVESVYTTFRDREIMFHVSTKLPFTDGDAQQLQRKRHIGNDIVAIIFQEENTPFVPDMIASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPPVFQKGPEFREFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHAHTQAM-----LGLGPEEDKFENGGHGGFLESFKRAI 501
The following BLAST results are available for this feature:
BLAST of TCONS_00063583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPGP22.446e-10140.55Rap1 GTPase-activating protein 2 OS=Homo sapiens G... [more]
back to top