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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063592 ID=TCONS_00063592|Name=TCONS_00063592|organism=Clytia hemisphaerica|type=transcript|length=3271bp
tgtaattccaagggggtaggtcacaaaaggttggacctcctcaacagggg
gtgcacggtttttttctggaaaagcccatttttatTCTAGAATGATATTA
AAACGAGACGTGGACCACCAGCTGTTCTTCTAAATAAACTTTTAGAACAT
ATTCAACCATttcttatcttttcaatatGGAATCGCTGGaaaaaacacag
atttgataaAGATGTTCAAGTGAAAAATCTCTGATAACCTGGTGAAGAAG
TAGTTACACGAGACTTTTTTTCTCTGCACTTTTCATTCTTTACTAACAGT
TTTTATTGATGTAATTTCAGGACAACAATGGTCTGTTCTTTTAGAATCAC
ACCAACAGCATCAATCACCAGCATATCAACACAAAGAGGTCAGCTACGTT
AACCTGGATGCACCACCTTTGCAACCCATAGCAACAACAAgtgtaaacaa
agatggcggccaAGCTGCGATGTTGAAACCTGAGAATAAAAGTTTGACGG
ACCTTAAACAACAATTTAGATCGAGGCCTCATTCAGCTGAGGTTGTTTCG
ATGCGAGAAGATTTCTTCGATCTAACAACGAACAATCTGAAATCTGGCTC
TGATTCAAACCTCGGATTCAAAGACACAAATCCTGAAGTCCAAGACACAG
TAAATGACCGAATAACTAAAAACATGACAGCATTTTTATCTTTCACGAAC
CCTTTATCAAGCGAAGATGTTAGTCTACAATCAGGACTGTTGAATCCAGT
CAACGTTTCTAATCCACCAACTTCTGCTCGTCAAAATAGAAATTGGAGCA
GtattgatccattatcgagtaCCAAGGCAGCATCCTGTGAGAATCTGTAC
GAAGAAATCGACAATGAACAATATCGAAGTGGTCGAAATACACAAACTTT
GCGTCCTAGACCTAAAGCTAACCTACCAATTCCTCAAGAAACGAATGCAG
CTTATCGTAAAACTAGCTTAGACGCTTACGCACAATCTATAAGAAAAGAC
TTCGATCTACTTTCACAACAACTGGGGCCTAGGCGTGAGACAGCTTCATN
TAGAAAAGACTTTGATCTACTTTCACAACAACTGGGGCCTAGGCGTGAGA
CAGCTTCATGTGACAACCTACCCGAAAGTATCAGTTCACTGAATGTGTCT
GTGAACGACGTCAAAAATTATCCGTCCGTGCAAAACACTCAATATCTTCA
ACGGTTTGGGAGTGTCATACCTGTTAGCCAAGTTAATCAAAATATGTTTC
CGCCCCAGCAAGCAAACACTAGGTTGGTAGGCCCGTCCCACCAGCCGCCT
CAACAGCCGCCCACAACGGGTAATTTAACGGCTGAAAAGTCACCAGActa
ttttaaaaacttcttaGCAGACCAAAAAACCATGAATCATTTTACATATG
ATCCAAAGGCGAAACCAAAACAGACTCCCTCTCCGCCCTCGGCGAAAGAA
AAATTACGGCAAAATGCTACGAATTTTACCGATAACCAATGGGACTTGTT
TGAAGATTGTGTTAAAGGCTCGAAAAAAGTGGATAAGGACCGTAAAAAGT
CACAAGGGAAACGCATTAGTTGGCCTAAGAATAACAGCGGTGGCTTGGTC
GACATTACTCATGAAGAAACTGAGGACCAGAAAGGTGAATTTAGTGAGAA
ATTCAAAACTATCAGATCTATATTACCCGATGCTTCAGTTGGTGAATGCT
TGGAAGGTTTGAGAAGCTCTGGTAATGATGTCAATAGAGCTGTTCGATAC
ATTCAGATCCTCAAGTTATATCGGTTCAATTATGGTTATTCATTTGAAGA
TTGTGAAAAACTTTTGGAGAAGAATGGGTTCGATTTTAAGAAAGCAGAAT
GCGAGCTGAAGACTTGTCATGTTTGTGGTAAATTTCAATCCCTGGATCGT
ACCCAAGTTCAGGATACTTTAAGTTTCTGCCAATGGGATGTGACTTTGAC
TTTGAAGACAATTTTCATACAGAAATGTGGCGGGTTTGGAATTGAGGAAC
CTAAAGCGAGATCACTTTTTAACGAGAATAAAGAAGATGTTACGAAAGCT
TTAGAAATGGCGAAAATTGTTCGCGTAGCTGAAATCACCAGTAAACCTGA
GAATGTTTGTTTTAAAACACTCACTCGTTGTAAATGGAATATTGAGAGAG
CTGTCAATGAGATTTTTACTAATTCGTGAACAGCATGTTTTGATGGAGAG
CTTTTATACTGTATTTTTATGTAGcaatttttccatattttttcagcttt
caaaattttctattcTGCATTTGTcttgttcttcttttatttaatAGAAA
TTGTAAACCGAAAATCAAACTTTAAgttcattttcaattataaatcaATA
GTACTTttcaaaatgtaacttttaacCACATGCTTTAGGGCACAGCTTAG
CAAAATTCAGGTCAATTTTGGCAAACTTTGGCAAAAATATTCAATCAATT
TGTCCCTCGTCAGCACGCTATAGTAAGTTAGACCCTCTTGCAGCCTCTGG
TTCTTGTTAAAGTGGCAGTTCTCAAAAAAGAACAATCTAAGTTCTTATCA
TTTGAATTTAATGTATTGCAAACCTTCGGCTAGGCGTTTGAGGACCTTTA
TAATGTTCTAGAGTATTATTGTATTCAACATTAGTAAAATTATTTCTCGT
ATTGTACAATATTCAGGCCAATTCTATCGTGGTCTTTAGACCATATTCAG
ACGTTACGATTCCGTATTGTTccaaaacgaaacggttccgaaacaagtgt
gaacgccaaaattcgaaacgtcaaaaaagaagacgtcaaaggaaaacaga
tcgaaacggtttcgctccacattttttcatcggaacggaactgctccgtt
ttcttgctccaaaacgttctgaaaccaatatgaacactttTGATCCGTAA
CGAAAACCATACTGGAACGATACGAAACCGTAGCGTCTGAACAGGGTCTT
AGTGTTAAAAATAATATTACAGTAAGTATgctgtaatttttcaaagtata
ATCGTTCTAAAAACTTATTGTTATAAAATTTAACCCTTTATTTAAATGAA
TTTATAGATTATTCTATTGAAAGATAAATACTAGCTTGTACAAGGAATAT
ATTGAATTTGTAATagaaattgataaaattttatgtttttttagtatttt
agtgCTCCATTGATTTGATATTTCCAGATAATGAATCAAGTCTCACAACA
ATCTGCAAAAATCATTGctggttgaaaattttgctCGATATGTTTTATCA
gaataaatattgaagattCAC Run BLAST on NCBI transcript from alignment at scaffold_394:126514..129784+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063592 ID=TCONS_00063592|Name=TCONS_00063592|organism=Clytia hemisphaerica|type=transcript|length=3271bp|location=Sequence derived from alignment at scaffold_394:126514..129784+ (Clytia hemisphaerica)
tgtaattccaagggggtaggtcacaaaaggttggacctcctcaacagggg
gtgcacggtttttttctggaaaagcccatttttatTCTAGAATGATATTA
AAACGAGACGTGGACCACCAGCTGTTCTTCTAAATAAACTTTTAGAACAT
ATTCAACCATttcttatcttttcaatatGGAATCGCTGGaaaaaacacag
atttgataaAGATGTTCAAGTGAAAAATCTCTGATAACCTGGTGAAGAAG
TAGTTACACGAGACTTTTTTTCTCTGCACTTTTCATTCTTTACTAACAGT
TTTTATTGATGTAATTTCAGGACAACAATGGTCTGTTCTTTTAGAATCAC
ACCAACAGCATCAATCACCAGCATATCAACACAAAGAGGTCAGCTACGTT
AACCTGGATGCACCACCTTTGCAACCCATAGCAACAACAAgtgtaaacaa
agatggcggccaAGCTGCGATGTTGAAACCTGAGAATAAAAGTTTGACGG
ACCTTAAACAACAATTTAGATCGAGGCCTCATTCAGCTGAGGTTGTTTCG
ATGCGAGAAGATTTCTTCGATCTAACAACGAACAATCTGAAATCTGGCTC
TGATTCAAACCTCGGATTCAAAGACACAAATCCTGAAGTCCAAGACACAG
TAAATGACCGAATAACTAAAAACATGACAGCATTTTTATCTTTCACGAAC
CCTTTATCAAGCGAAGATGTTAGTCTACAATCAGGACTGTTGAATCCAGT
CAACGTTTCTAATCCACCAACTTCTGCTCGTCAAAATAGAAATTGGAGCA
GtattgatccattatcgagtaCCAAGGCAGCATCCTGTGAGAATCTGTAC
GAAGAAATCGACAATGAACAATATCGAAGTGGTCGAAATACACAAACTTT
GCGTCCTAGACCTAAAGCTAACCTACCAATTCCTCAAGAAACGAATGCAG
CTTATCGTAAAACTAGCTTAGACGCTTACGCACAATCTATAAGAAAAGAC
TTCGATCTACTTTCACAACAACTGGGGCCTAGGCGTGAGACAGCTTCATN
TAGAAAAGACTTTGATCTACTTTCACAACAACTGGGGCCTAGGCGTGAGA
CAGCTTCATGTGACAACCTACCCGAAAGTATCAGTTCACTGAATGTGTCT
GTGAACGACGTCAAAAATTATCCGTCCGTGCAAAACACTCAATATCTTCA
ACGGTTTGGGAGTGTCATACCTGTTAGCCAAGTTAATCAAAATATGTTTC
CGCCCCAGCAAGCAAACACTAGGTTGGTAGGCCCGTCCCACCAGCCGCCT
CAACAGCCGCCCACAACGGGTAATTTAACGGCTGAAAAGTCACCAGActa
ttttaaaaacttcttaGCAGACCAAAAAACCATGAATCATTTTACATATG
ATCCAAAGGCGAAACCAAAACAGACTCCCTCTCCGCCCTCGGCGAAAGAA
AAATTACGGCAAAATGCTACGAATTTTACCGATAACCAATGGGACTTGTT
TGAAGATTGTGTTAAAGGCTCGAAAAAAGTGGATAAGGACCGTAAAAAGT
CACAAGGGAAACGCATTAGTTGGCCTAAGAATAACAGCGGTGGCTTGGTC
GACATTACTCATGAAGAAACTGAGGACCAGAAAGGTGAATTTAGTGAGAA
ATTCAAAACTATCAGATCTATATTACCCGATGCTTCAGTTGGTGAATGCT
TGGAAGGTTTGAGAAGCTCTGGTAATGATGTCAATAGAGCTGTTCGATAC
ATTCAGATCCTCAAGTTATATCGGTTCAATTATGGTTATTCATTTGAAGA
TTGTGAAAAACTTTTGGAGAAGAATGGGTTCGATTTTAAGAAAGCAGAAT
GCGAGCTGAAGACTTGTCATGTTTGTGGTAAATTTCAATCCCTGGATCGT
ACCCAAGTTCAGGATACTTTAAGTTTCTGCCAATGGGATGTGACTTTGAC
TTTGAAGACAATTTTCATACAGAAATGTGGCGGGTTTGGAATTGAGGAAC
CTAAAGCGAGATCACTTTTTAACGAGAATAAAGAAGATGTTACGAAAGCT
TTAGAAATGGCGAAAATTGTTCGCGTAGCTGAAATCACCAGTAAACCTGA
GAATGTTTGTTTTAAAACACTCACTCGTTGTAAATGGAATATTGAGAGAG
CTGTCAATGAGATTTTTACTAATTCGTGAACAGCATGTTTTGATGGAGAG
CTTTTATACTGTATTTTTATGTAGcaatttttccatattttttcagcttt
caaaattttctattcTGCATTTGTcttgttcttcttttatttaatAGAAA
TTGTAAACCGAAAATCAAACTTTAAgttcattttcaattataaatcaATA
GTACTTttcaaaatgtaacttttaacCACATGCTTTAGGGCACAGCTTAG
CAAAATTCAGGTCAATTTTGGCAAACTTTGGCAAAAATATTCAATCAATT
TGTCCCTCGTCAGCACGCTATAGTAAGTTAGACCCTCTTGCAGCCTCTGG
TTCTTGTTAAAGTGGCAGTTCTCAAAAAAGAACAATCTAAGTTCTTATCA
TTTGAATTTAATGTATTGCAAACCTTCGGCTAGGCGTTTGAGGACCTTTA
TAATGTTCTAGAGTATTATTGTATTCAACATTAGTAAAATTATTTCTCGT
ATTGTACAATATTCAGGCCAATTCTATCGTGGTCTTTAGACCATATTCAG
ACGTTACGATTCCGTATTGTTccaaaacgaaacggttccgaaacaagtgt
gaacgccaaaattcgaaacgtcaaaaaagaagacgtcaaaggaaaacaga
tcgaaacggtttcgctccacattttttcatcggaacggaactgctccgtt
ttcttgctccaaaacgttctgaaaccaatatgaacactttTGATCCGTAA
CGAAAACCATACTGGAACGATACGAAACCGTAGCGTCTGAACAGGGTCTT
AGTGTTAAAAATAATATTACAGTAAGTATgctgtaatttttcaaagtata
ATCGTTCTAAAAACTTATTGTTATAAAATTTAACCCTTTATTTAAATGAA
TTTATAGATTATTCTATTGAAAGATAAATACTAGCTTGTACAAGGAATAT
ATTGAATTTGTAATagaaattgataaaattttatgtttttttagtatttt
agtgCTCCATTGATTTGATATTTCCAGATAATGAATCAAGTCTCACAACA
ATCTGCAAAAATCATTGctggttgaaaattttgctCGATATGTTTTATCA
gaataaatattgaagattCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063592-exon-scaffold_394-1491911889:126514..129784 | TCONS_00063592-exon-scaffold_394-1491911889:126514..129784 | Clytia hemisphaerica | exon |
| TCONS_00063592-exon-scaffold_394-1510915933:126514..129784 | TCONS_00063592-exon-scaffold_394-1510915933:126514..129784 | Clytia hemisphaerica | exon |
| TCONS_00063592-exon-scaffold_394-1575043694:126514..129784 | TCONS_00063592-exon-scaffold_394-1575043694:126514..129784 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_394 | supercontig | scaffold_394:126514..129784 + |
Blast
The following BLAST results are available for this feature:
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