TCONS_00063628 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063628
Unique NameTCONS_00063628
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063628 ID=TCONS_00063628|Name=TCONS_00063628|organism=Clytia hemisphaerica|type=transcript|length=820bp
CTTCTGTGCAGTTAATGTGAAACAATGATGCGACGTCTTTCTTTCCCTAG
GTCTTTAATTTTGATATTAGCAACTgtatttcaataatattttttctggT
CTCGAGAATTGTGTATTTGTTGCTCTACGGTTATATTGTCATAAAAATGT
GGATCGACCAGGATAGTAAAAAATAGATTTGAATTTAAGGGTCAGTGAAA
TAAAAATTACATTACTTTCAATCGATTGCAATCGCTGCTATAGCTCAATC
TCTGTGAGCAGGTATACTGTATTATTTTGCCTTTAATTTACAAAATACAG
AAATTTATATCTGCCGCTAATCCAACGCTCAATCTACTATTCGATATTCT
ATTATTCCATAAGCAAGCCCTCGTTATCAATGGAAATGAAACTCCTCAGC
TGTAAACTGCACTAAATGTAAGAGAATAAGGATTTTAATAAACAGTCGGC
CCTTAGATcattttttacctaaaattaTCTGATTGTTTCACTGTTAGCTA
TATACGAGATCCAAGCAAGCGTGCAGTAATTGAGGTTCCTGGTGATGGGC
ACTGCCTCCTATATGCTTTGGAGATAGGTCTTCACACATGCGAGGTGGCT
TACATGAAACCGTCATATGAGGAATTAAAAACGATGGTTCTAAAAGATTT
TGAATCTTACGAGGACGAATATCGTGATTTCTTTTGTGGCGAAGAGGTAT
TTAAGTATTTCTTTAATCATTTTCCTTTCGtcttaaatttaaatttcaaa
agacaAGAATCtccaaagaaaaagagaagATTTATTTGGTGTAAGGTTAA
TATATGTAGATCCATGATAG
Run BLAST on NCBI

transcript from alignment at scaffold_396:157131..157950

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063628 ID=TCONS_00063628|Name=TCONS_00063628|organism=Clytia hemisphaerica|type=transcript|length=820bp|location=Sequence derived from alignment at scaffold_396:157131..157950 (Clytia hemisphaerica)
CTATCATGGATCTACATATATTAACCTTACACCAAATAAATcttctcttt
ttctttggaGATTCTtgtcttttgaaatttaaatttaagaCGAAAGGAAA
ATGATTAAAGAAATACTTAAATACCTCTTCGCCACAAAAGAAATCACGAT
ATTCGTCCTCGTAAGATTCAAAATCTTTTAGAACCATCGTTTTTAATTCC
TCATATGACGGTTTCATGTAAGCCACCTCGCATGTGTGAAGACCTATCTC
CAAAGCATATAGGAGGCAGTGCCCATCACCAGGAACCTCAATTACTGCAC
GCTTGCTTGGATCTCGTATATAGCTAACAGTGAAACAATCAGAtaatttt
aggtaaaaaatgATCTAAGGGCCGACTGTTTATTAAAATCCTTATTCTCT
TACATTTAGTGCAGTTTACAGCTGAGGAGTTTCATTTCCATTGATAACGA
GGGCTTGCTTATGGAATAATAGAATATCGAATAGTAGATTGAGCGTTGGA
TTAGCGGCAGATATAAATTTCTGTATTTTGTAAATTAAAGGCAAAATAAT
ACAGTATACCTGCTCACAGAGATTGAGCTATAGCAGCGATTGCAATCGAT
TGAAAGTAATGTAATTTTTATTTCACTGACCCTTAAATTCAAATCTATTT
TTTACTATCCTGGTCGATCCACATTTTTATGACAATATAACCGTAGAGCA
ACAAATACACAATTCTCGAGAccagaaaaaatattattgaaatacAGTTG
CTAATATCAAAATTAAAGACCTAGGGAAAGAAAGACGTCGCATCATTGTT
TCACATTAACTGCACAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039884XLOC_039884Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063628-exon-scaffold_396-1491911889:157131..157950TCONS_00063628-exon-scaffold_396-1491911889:157131..157950Clytia hemisphaericaexon
TCONS_00063628-exon-scaffold_396-1510915933:157131..157950TCONS_00063628-exon-scaffold_396-1510915933:157131..157950Clytia hemisphaericaexon
TCONS_00063628-exon-scaffold_396-1575043694:157131..157950TCONS_00063628-exon-scaffold_396-1575043694:157131..157950Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_396supercontigscaffold_396:157131..157950 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.174195	0.283113	0.262977	0.128641	0.078304	0.247507	0.223955	0.209664	0.0978606	0.121216	0.294138	0.232026	0.231703	0.0401044	0.0329713	0.0707664	0	0.223388	0.0617244	0	0	0.1643	0.133152	0.0605275	0.374051	0.333832	0.0796187	0.169942	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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