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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063629 ID=TCONS_00063629|Name=TCONS_00063629|organism=Clytia hemisphaerica|type=transcript|length=1054bp
CGTTTACACTAAAATTTCATATTACACTATATTTTGTTACATAAAAGAAT
GTATATATACCAACATTAACACAGAGAGTTGTTAAGGCAATGCGTTTTTG
TTTTGAGCAAAATGGCGGACACAGACCAACAgtCTTTGACATCATCAGAC
ACCAGCTCCTCATCGACCtcatcatcaccatcatcagTGAGTGAACCACC
ACGCAACGATATGACCGTCATTGGATCTTCCTACCACTATTCATTCGGGG
TACCAATCCATACTGGTCCTGACTCCATTAGGCCGTACCGACGCACACGA
CTCGACGCCACATACACGGGGTTCTCTAAATCACAAACAAATGTTGGTTC
CTTAGATACAGGTCACGTGACACATGATTCCCCGATTAACCCGTTTCCTA
GAAGACGCTCCGATCGGGTTGGTGGTATCGGATGGGGATTGAGTAAGCCG
GGCGCCTATGATGCGGGACTGTTAAAAAGCGGACATCAGATTCAACGAAA
ACACTTCCGTGACCAGAAAGAGAATGAGTTATCTCGGAGGCCACCTTTTC
CTTAATTATGGACCTAAATTGGTTTATGTGGCACGTATGTAAGTCCGTGA
TGAACACCTACTCAGCTGCAGTTGGAGATTTTTTTTGAGGAAATAATTCA
AGACTTTGGGCTAAAGGCTTTACTGTGGAGTGTGGAGAAATTTTGTACTT
AGATGATTGATaaaggccttttcataaattacgtcacttgcctcgtattc
atacaattaccatggtgatcatatcccttgagacaATAAATGATTtctga
ataggaagtagttttaataaaatccgctggaagTTAATCTAACCTTGGCA
ATaacttcaaaacgaggcaagtgatgttcttgacgtaatttatgaaaagg
tctaatATTGATAGAGGTAGAatgtatttgtattttttgtgtatTAAAGA
TTCTATTTCTACAGCAAATGCATGCAACTCGACAATTATTCCCGTAtaaa
aagtggacaaaaaatTGTTCccgtttgaaaaaatatccGGAATTTCAACT
CATC Run BLAST on NCBI protein sequence of TCONS_00063629-protein >TCONS_00063629-protein ID=TCONS_00063629-protein|Name=TCONS_00063629-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MADTDQQSLTSSDTSSSSTSSSPSSVSEPPRNDMTVIGSSYHYSFGVPIH
TGPDSIRPYRRTRLDATYTGFSKSQTNVGSLDTGHVTHDSPINPFPRRRS
DRVGGIGWGLSKPGAYDAGLLKSGHQIQRKHFRDQKENELSRRPPFP Run BLAST on NCBI transcript from alignment at scaffold_397:1615..5018+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063629 ID=TCONS_00063629|Name=TCONS_00063629|organism=Clytia hemisphaerica|type=transcript|length=3404bp|location=Sequence derived from alignment at scaffold_397:1615..5018+ (Clytia hemisphaerica)
CGTTTACACTAAAATTTCATATTACACTATATTTTGTTACATAAAAGAAT
GTATATATACCAACATTAACACAGAGAGTTGTTAAGGCAATGCGTTTTTG
TTTTGAGCAAAATGGCGGACACAGACCAACAggtaaaagaacatttttca
ttcataatatattaggcgaaaataaaaaaatgcagtgtttccggaatgcg
ggtgaaggaaaaaagctttcatgcggccgccggaaaaatttttttgttgc
tatttttgataacttaagaacaaaacttgatttacaagcgggaatatcta
accaaacgacgtttgatagcttgaacggtcaactttattttctttataat
gaaccatatagatgaacccatagtctgcggtcgggtcagaaaatttttta
ttttcacccggccggtttccggaaacactacatttttttattttcgcctt
atgTAAAATTAAGCTTGAATCAATCATTTTTACATGCACTGTCGCTGAAA
TTCCATAAGGTGGATCCTGGCGGGTGCACCATGGTCACTAGCTGATCAAA
GTTACGGCGGTATCTTTCAGTGAAAATATTGAGAGAATATTTGCTTAGCA
GACTGTAGTTAATTGAACAAAATTGTCACTTGATGACCTTGATGAATCTA
ATCTCAGGCTCATAtgtaaaaagatcaaaatttaaatctcaaaatttctA
GCGAAAAAGTCCCAAAAAAGGGTAACAAATTTAACAAAACTTTGGAGTTT
CCCTCAATTTCAGTCCCCTTTAAGGGTCTGGTTTAGTCCCCAGGTCCAAA
TTCAAAAAGAAGGGCGGCATATAAACTCGACATCCCTCAAACATATCACC
CCCGGATGAAAACATTCGACTTTTGTCATAAATAATTAtcgtaattttga
aaataaatgaaactTAATTTAGAATAATTGCTTTTTAATTATCCATATTA
TAACTACAAATACGTAGATGACAAAATAGTAGACATAAacatttataaac
aaaaacacaGCCACTTGGCAACGGtagtaaaatttagaaaaagtgaAAGT
TTTGTTCGATAAACTTGTGGTGATTAAAAAGGTTAAGGTTGGAGATGACT
TTACTCCTAAATATATGAGAAAAGAATATATTACAACTTTTTCAGGCAGG
TAAGGTattgtgattttttattttgaaaaaactgttttgaatttttaaga
tCAGACAATCGATCCAAACGAAccgaattttgaataaatatatTACCCAA
ATCTTGTTCCATagggcgagaccaatttgattagttgttttacgggcccg
actgaccctgaaattccaaagatcgaaataaaaatgaaattgctTTTGGT
AGTatgcttttattttcatttctttataaagactttcaaattctttaatt
taaactaaaatttggtagtttttccaaggttttgagatttttatgttcaa
tttttcattataTCCTtgaattcgagctttttgtgttattttattttcta
tttcgcatttttgtcaagatgtagtagtttttgctgcctttttaggagat
tttgtAGGTGAAANtatttttattttctatttcgcatttttgtcgagatg
tagtagtttttgctccctttttaggagattttttaggtaaatttctactt
ttatttttattttttcaccgaccgaccaaccctctatttttggtagcttg
gcccgtaaaacaacaaattaaattgaccTCGCCTAATAAAGGAATCAATC
AAAGCAGCTAATCCATATATTAAATCCACatattaaatatttttgtgaaa
actttGGTGATTTCGATTTTAAATAagtatttcaaatttattttcttttg
atcaaaTGTTACATTCCTCTAAATATATCGAGAACGGCTGAAAAAGAGTG
AATTTAAGCGAAGTACTACTGCACTATAAAATatgagataattttaaatt
gaaaatatttgtaaTGGTAAAGCAATCGTTTCATCTATTTTCAGAACAGA
AAGTCATACAtttaaaaatcaacattttgttCGATGTTCTCGTTTCAAAG
TAATAAATCTTTTTCGATAGTTTTTACTTGAACGTTGAATCTactcttgt
gtgcttaattgtagggggggtggaataagcaaGGGGTGGGTACTCCAGAT
AAAAATCAACATAATTAAGTGCTATTGAcctgattttcctaaaaatccct
agaaaaattaaggtttttggccaattttggcactttgtAGCATAAAGgcc
ataaaatgggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccccctacaatCAAGC
ACACAAGAgtacaactttttttttggttttagtCTTTGACATCATCAGAC
ACCAGCTCCTCATCGACCtcatcatcaccatcatcagTGAGTGAACCACC
ACGCAACGATATGACCGTCATTGGATCTTCCTACCACTATTCATTCGGGG
TACCAATCCATACTGGTCCTGACTCCATTAGGCCGTACCGACGCACACGA
CTCGACGCCACATACACGGGGTTCTCTAAATCACAAACAAATGTTGGTTC
CTTAGATACAGGTCACGTGACACATGATTCCCCGATTAACCCGTTTCCTA
GAAGACGCTCCGATCGGGTTGGTGGTATCGGATGGGGATTGAGTAAGCCG
GGCGCCTATGATGCGGGACTGTTAAAAAGCGGACATCAGATTCAACGAAA
ACACTTCCGTGACCAGAAAGAGAATGAGTTATCTCGGAGGCCACCTTTTC
CTTAATTATGGACCTAAATTGGTTTATGTGGCACGTATGTAAGTCCGTGA
TGAACACCTACTCAGCTGCAGTTGGAGATTTTTTTTGAGGAAATAATTCA
AGACTTTGGGCTAAAGGCTTTACTGTGGAGTGTGGAGAAATTTTGTACTT
AGATGATTGATaaaggccttttcataaattacgtcacttgcctcgtattc
atacaattaccatggtgatcatatcccttgagacaATAAATGATTtctga
ataggaagtagttttaataaaatccgctggaagTTAATCTAACCTTGGCA
ATaacttcaaaacgaggcaagtgatgttcttgacgtaatttatgaaaagg
tctaatATTGATAGAGGTAGAatgtatttgtattttttgtgtatTAAAGA
TTCTATTTCTACAGCAAATGCATGCAACTCGACAATTATTCCCGTAtaaa
aagtggacaaaaaatTGTTCccgtttgaaaaaatatccGGAATTTCAACT
CATC Coding sequence (CDS) from alignment at scaffold_397:1615..5018+ >TCONS_00063629 ID=TCONS_00063629|Name=TCONS_00063629|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_397:1615..5018+ (Clytia hemisphaerica)
ATGGCGGACACAGACCAACAgtCTTTGACATCATCAGACACCAGCTCCTC
ATCGACCtcatcatcaccatcatcagTGAGTGAACCACCACGCAACGATA
TGACCGTCATTGGATCTTCCTACCACTATTCATTCGGGGTACCAATCCAT
ACTGGTCCTGACTCCATTAGGCCGTACCGACGCACACGACTCGACGCCAC
ATACACGGGGTTCTCTAAATCACAAACAAATGTTGGTTCCTTAGATACAG
GTCACGTGACACATGATTCCCCGATTAACCCGTTTCCTAGAAGACGCTCC
GATCGGGTTGGTGGTATCGGATGGGGATTGAGTAAGCCGGGCGCCTATGA
TGCGGGACTGTTAAAAAGCGGACATCAGATTCAACGAAAACACTTCCGTG
ACCAGAAAGAGAATGAGTTATCTCGGAGGCCACCTTTTCCTTAAATGGCG
GACACAGACCAACAgtCTTTGACATCATCAGACACCAGCTCCTCATCGAC
CtcatcatcaccatcatcagTGAGTGAACCACCACGCAACGATATGACCG
TCATTGGATCTTCCTACCACTATTCATTCGGGGTACCAATCCATACTGGT
CCTGACTCCATTAGGCCGTACCGACGCACACGACTCGACGCCACATACAC
GGGGTTCTCTAAATCACAAACAAATGTTGGTTCCTTAGATACAGGTCACG
TGACACATGATTCCCCGATTAACCCGTTTCCTAGAAGACGCTCCGATCGG
GTTGGTGGTATCGGATGGGGATTGAGTAAGCCGGGCGCCTATGATGCGGG
ACTGTTAAAAAGCGGACATCAGATTCAACGAAAACACTTCCGTGACCAGA
AAGAGAATGAGTTATCTCGGAGGCCACCTTTTCCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063629-exon-scaffold_397-1491911889:1615..1746 | TCONS_00063629-exon-scaffold_397-1491911889:1615..1746 | Clytia hemisphaerica | exon |
| TCONS_00063629-exon-scaffold_397-1510915933:1615..1746 | TCONS_00063629-exon-scaffold_397-1510915933:1615..1746 | Clytia hemisphaerica | exon |
| TCONS_00063629-exon-scaffold_397-1575043694:1615..1746 | TCONS_00063629-exon-scaffold_397-1575043694:1615..1746 | Clytia hemisphaerica | exon |
| TCONS_00063629-exon-scaffold_397-1491911889:4097..5018 | TCONS_00063629-exon-scaffold_397-1491911889:4097..5018 | Clytia hemisphaerica | exon |
| TCONS_00063629-exon-scaffold_397-1510915933:4097..5018 | TCONS_00063629-exon-scaffold_397-1510915933:4097..5018 | Clytia hemisphaerica | exon |
| TCONS_00063629-exon-scaffold_397-1575043694:4097..5018 | TCONS_00063629-exon-scaffold_397-1575043694:4097..5018 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_397 | supercontig | scaffold_397:1615..5018 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027814 | DUF4562 |
Blast
The following BLAST results are available for this feature:
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