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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063662 ID=TCONS_00063662|Name=TCONS_00063662|organism=Clytia hemisphaerica|type=transcript|length=3288bp taagttttttatgtATCAGCAATGCTAGTAATATCCATAAAGGTGTAAAC ATTTCCTCCATTACATTTGTGATTTTCACTCCAAAGTCTATTGGAAATTG TAGAGGTAAACTATGAATGTATACAACTGATCGAAACATATTGATCACCG CAtgtaaacataaacaaaaatatgAAGATAAATCCAGTTTAGTAagaaca ttgtttttataaggaTTAACATAGTAATGAATTATCAAGTAGATTGTTAT GATAGGTGCTAGAATGGTCATGCGGACTACTGGATCAATTAGATATGTTG CCAAGAAAGATAAGATCAACCGTTCATATAAGCGCCAAGCTTCCCACCAA AACATGTTGGTTTTATATGGTGTTTCAAATGtttcataaagtttttcttg tatttttttttcttctgattCTGAGAGCCATCTTTGTTTCTTCCTCAAAT AAAAGAAAGGTGTCATAATTGGAAATGTCAAGCATGTTATAAACAGCCAC ACACTGATGTGTTTTTTCTTGTGAAGGTTATATGCTGCTGTAGATGCAAT AGGGAAAGGAAGCACCCAAATTgccaagaaaatgaaatttgcgATTTGCC AACTGGTATAACATTCAATATCTCCTGCAATATACAAAACAGCTGTCTCT TTAATTGGGACACAATGTATGAAATTGAAAGATATTTTGGATAAGTTTTT ATAACAGAATGCCATTATGGTAAAAAAGCCTATGGAAAAAGTGTCTATTA TGGAAGATGTTCTTTTATTGCAAACCCGAttaatcaattttgtaaataat aACGATGATAGAACTGTTGTCAGCATAATAATAGTTGAAGCATATGTTTT CAAGAATTCTCTGTAAATAACAGTTGTTGTAATTGATGGACAAAAAGATT GAAGGTTGTCGGTGATCATTTCAATGTTGAAAAATCCTGATATAAATGAT GTTGGTGGCTGGTACAAATCATCAAGCTTTATCGTCAGTAATGATTTGGC TTGATAAAATCCAACAAGGATATTGAAGATAGGTGAGAATGGTAAATCTT GTGGTGCTGCTATTTTAGTGTTGTCTGATTTCTCCACCAGTAGATGTTCA TTTGTCTCTTGGTAATTGCTTTTGTTTATTACGCATAATTCACTTCCAAG GTCAGCCTTAAGACTTTTTGATGATGGACTAGGATTCTGTTCATGCTTCC TAAAACAGCACGGTagtttttgtttgattgaagaaatgattttagacttg ttattttttaaatatgataCAATTGGCTTTGTAAAGCACAACAACAATGC CAAAGTAATTGAAAAtgcaaaataaataaaccaaAACCAAACACGATGAT TGTTACTGCATCTAAACGATGGTATGCAATTATTAGAAAAATAGTTCACA TAATATCCTTTTTTACAACTTCCACACAGAGTACCGGTACGATAAAGATT ACATGTATTAAATGAATTACAAGGTTTTCCATGGTTTGAACAGCAGTATA AATCTGGACATGAGATAAATTCcatttcatgatttttattgataaaacca TAAAAACTGTCTTgacttttgatttgttttctacAGTCTCCCCCGGGTGG GCAAAATTTGCATGATAAGTTAGATTTCACTTCAAGGAATCTGTCAATTA CTGTAATATTTTCTTCTTGGTCAGTATTAATGTTTTCAAGCCTGTATGCT TTTAGTATgcctttgatttttttatgcCCACTTAAAGTCATGTATAGACC CCTGTCACAAGGTTGACAAACAAGTTGATAATCAAATTCTGTTTTTGATT TAGTGATTGATGAAACAGGATTCTGGTTTATTGGACAAGCAACAGAAAAT CCTTCAAGAATATGATCAGTATTTCTTATATCAAGGGATAAGGACATCAC ATTGGATTTTGAATTTGGCCTTCCCTTTAAAACAACTGATATATTTCTCA TTGTAAACTTCCCATGTTTTAATCTGAATTCCATGATGGCATTGCCAGGT TGTTTCACTTTTGAAGTTGAATAGTAAATATCTTTAAGGTTCACACTCAA ACCTTTTGCATCACAACCATCATACTTTATCATCTTTCCAATGCCACTTA CTTTATTGTCTTGAAGGCTTAAGGATTCAACCCAAAATGTTCCTTTATGG AATGTTGCAAAGCTATAAAAATCATTCTCAGTAATGTTATTATGTTTCAA TGTTACCGTAGACTTGAAACTGGTCAAAAAGTCAATTTTGGCAAAGTTTC TTGTTGCTGTATTGTTCTCAAAAACAAACTCACTCACACTTTGTTCGTGT CTATCAGTTAACTCAATGTAGAACAATGAATCAGAAGCAATGTTATGCTC AATATTTGTTGAAACAAAATTCAATGTACTGACTTTAGATGCCATGATAT TGACAAGTTTATTTCCATTAATGAAACTGTTTTGAATGTTTGTTTTACCA TACCAAGTTTCTATCATGGCATGCGCCAGTTCATTATCAatgaattttga tgaaaaaatgtcaagttttaaaatgttatttttgcttccaaatctttgct gAATTATGCTGCCACGTTGTATATAGTTTTGTTTGAAGTAAGACTGTCTT ATTTTCAAATGTCGATATTGGATTATGAAAAACTGTTTGATTCTGTTTTG TACAAACTCGCTACTTTCGATCACTATATTTTGACGCGATTGTATTCCAG TATTcccaataatatttttttgcatCACTACTTTAGAAATCGTAACTTCC TtctggaaattgatcaagttgtAACAGCTATTGTTCATAAACTTTGTTGT GGTCAATAAAAATCTTGCATTGCGATTGTCCTTCTTTTCTGAATCTTTAA TCATATTTTGTATAATTGTATTTTGTTCAAAATAGCTGTTACTGATGAAA AGATTGTTGCAAGGAACATAtatcattttaaattcaaatctaTTCTTAGA GAAATAACTTTTCTTTATTTCCAGACTGCAGTGAACACAACTGTCCAAGC ACTCAAACATTGAAAATGCATGATTCAGTGTGATATTTGAGTTTTCAATA ATAACTTTGGAAGCATGTACTTTGAAAATATACTCTTTGATGTATGATTC ATACTGTCGGTAGTTTCCATAAATATCACACTTATTAACGTTCAATTTGC TCTTGTGAGGAGAAGAGTTGTCTCTGCTTATATCAATAATACTGGTTAAA AGTATGTTTTCTCTGAAGTTTGTCAACTCTAAATTCAAAATGCAGCTTTC AGATCTTATAAGAGTTTGTAATGTATTTTTGTGGAATT Run BLAST on NCBI protein sequence of TCONS_00063662-protein >TCONS_00063662-protein ID=TCONS_00063662-protein|Name=TCONS_00063662-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1095bp
FHKNTLQTLIRSESCILNLELTNFRENILLTSIIDISRDNSSPHKSKLNV NKCDIYGNYRQYESYIKEYIFKVHASKVIIENSNITLNHAFSMFECLDSC VHCSLEIKKSYFSKNRFEFKMIYVPCNNLFISNSYFEQNTIIQNMIKDSE KKDNRNARFLLTTTKFMNNSCYNLINFQKEVTISKVVMQKNIIGNTGIQS RQNIVIESSEFVQNRIKQFFIIQYRHLKIRQSYFKQNYIQRGSIIQQRFG SKNNILKLDIFSSKFIDNELAHAMIETWYGKTNIQNSFINGNKLVNIMAS KVSTLNFVSTNIEHNIASDSLFYIELTDRHEQSVSEFVFENNTATRNFAK IDFLTSFKSTVTLKHNNITENDFYSFATFHKGTFWVESLSLQDNKVSGIG KMIKYDGCDAKGLSVNLKDIYYSTSKVKQPGNAIMEFRLKHGKFTMRNIS VVLKGRPNSKSNVMSLSLDIRNTDHILEGFSVACPINQNPVSSITKSKTE FDYQLVCQPCDRGLYMTLSGHKKIKGILKAYRLENINTDQEENITVIDRF LEVKSNLSCKFCPPGGDCRKQIKSQDSFYGFINKNHEMEFISCPDLYCCS NHGKPCNSFNTCNLYRTGTLCGSCKKGYYVNYFSNNCIPSFRCSNNHRVW FWFIYFAFSITLALLLCFTKPIVSYLKNNKSKIISSIKQKLPCCFRKHEQ NPSPSSKSLKADLGSELCVINKSNYQETNEHLLVEKSDNTKIAAPQDLPF SPIFNILVGFYQAKSLLTIKLDDLYQPPTSFISGFFNIEMITDNLQSFCP SITTTVIYREFLKTYASTIIMLTTVLSSLLFTKLINRVCNKRTSSIIDTF SIGFFTIMAFCYKNLSKISFNFIHCVPIKETAVLYIAGDIECYTSWQIAN FIFLAIWVLPFPIASTAAYNLHKKKHISVWLFITCLTFPIMTPFFYLRKK QRWLSESEEKKIQEKLYETFETPYKTNMFWWEAWRLYERLILSFLATYLI DPVVRMTILAPIITIYLIIHYYVNPYKNNVLTKLDLSSYFCLCLHAVINM FRSVVYIHSLPLQFPIDFGVKITNVMEEMFTPLWILLALLIHKKL Run BLAST on NCBI transcript from alignment at scaffold_397:75492..78779 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063662 ID=TCONS_00063662|Name=TCONS_00063662|organism=Clytia hemisphaerica|type=transcript|length=3288bp|location=Sequence derived from alignment at scaffold_397:75492..78779 (Clytia hemisphaerica) AATTCCACAAAAATACATTACAAACTCTTATAAGATCTGAAAGCTGCATT
TTGAATTTAGAGTTGACAAACTTCAGAGAAAACATACTTTTAACCAGTAT
TATTGATATAAGCAGAGACAACTCTTCTCCTCACAAGAGCAAATTGAACG
TTAATAAGTGTGATATTTATGGAAACTACCGACAGTATGAATCATACATC
AAAGAGTATATTTTCAAAGTACATGCTTCCAAAGTTATTATTGAAAACTC
AAATATCACACTGAATCATGCATTTTCAATGTTTGAGTGCTTGGACAGTT
GTGTTCACTGCAGTCTGGAAATAAAGAAAAGTTATTTCTCTAAGAAtaga
tttgaatttaaaatgataTATGTTCCTTGCAACAATCTTTTCATCAGTAA
CAGCTATTTTGAACAAAATACAATTATACAAAATATGATTAAAGATTCAG
AAAAGAAGGACAATCGCAATGCAAGATTTTTATTGACCACAACAAAGTTT
ATGAACAATAGCTGTTacaacttgatcaatttccagaAGGAAGTTACGAT
TTCTAAAGTAGTGatgcaaaaaaatattattgggAATACTGGAATACAAT
CGCGTCAAAATATAGTGATCGAAAGTAGCGAGTTTGTACAAAACAGAATC
AAACAGTTTTTCATAATCCAATATCGACATTTGAAAATAAGACAGTCTTA
CTTCAAACAAAACTATATACAACGTGGCAGCATAATTcagcaaagatttg
gaagcaaaaataacattttaaaacttgacattttttcatcaaaattcatT
GATAATGAACTGGCGCATGCCATGATAGAAACTTGGTATGGTAAAACAAA
CATTCAAAACAGTTTCATTAATGGAAATAAACTTGTCAATATCATGGCAT
CTAAAGTCAGTACATTGAATTTTGTTTCAACAAATATTGAGCATAACATT
GCTTCTGATTCATTGTTCTACATTGAGTTAACTGATAGACACGAACAAAG
TGTGAGTGAGTTTGTTTTTGAGAACAATACAGCAACAAGAAACTTTGCCA
AAATTGACTTTTTGACCAGTTTCAAGTCTACGGTAACATTGAAACATAAT
AACATTACTGAGAATGATTTTTATAGCTTTGCAACATTCCATAAAGGAAC
ATTTTGGGTTGAATCCTTAAGCCTTCAAGACAATAAAGTAAGTGGCATTG
GAAAGATGATAAAGTATGATGGTTGTGATGCAAAAGGTTTGAGTGTGAAC
CTTAAAGATATTTACTATTCAACTTCAAAAGTGAAACAACCTGGCAATGC
CATCATGGAATTCAGATTAAAACATGGGAAGTTTACAATGAGAAATATAT
CAGTTGTTTTAAAGGGAAGGCCAAATTCAAAATCCAATGTGATGTCCTTA
TCCCTTGATATAAGAAATACTGATCATATTCTTGAAGGATTTTCTGTTGC
TTGTCCAATAAACCAGAATCCTGTTTCATCAATCACTAAATCAAAAACAG
AATTTGATTATCAACTTGTTTGTCAACCTTGTGACAGGGGTCTATACATG
ACTTTAAGTGGgcataaaaaaatcaaaggcATACTAAAAGCATACAGGCT
TGAAAACATTAATACTGACCAAGAAGAAAATATTACAGTAATTGACAGAT
TCCTTGAAGTGAAATCTAACTTATCATGCAAATTTTGCCCACCCGGGGGA
GACTgtagaaaacaaatcaaaagtcAAGACAGTTTTTAtggttttatcaa
taaaaatcatgaaatgGAATTTATCTCATGTCCAGATTTATACTGCTGTT
CAAACCATGGAAAACCTTGTAATTCATTTAATACATGTAATCTTTATCGT
ACCGGTACTCTGTGTGGAAGTTGTAAAAAAGGATATTATGTGAACTATTT
TTCTAATAATTGCATACCATCGTTTAGATGCAGTAACAATCATCGTGTTT
GGTTttggtttatttattttgcaTTTTCAATTACTTTGGCATTGTTGTTG
TGCTTTACAAAGCCAATTGtatcatatttaaaaaataacaagtctaaaat
catttcttcaatcaaacaaaaactACCGTGCTGTTTTAGGAAGCATGAAC
AGAATCCTAGTCCATCATCAAAAAGTCTTAAGGCTGACCTTGGAAGTGAA
TTATGCGTAATAAACAAAAGCAATTACCAAGAGACAAATGAACATCTACT
GGTGGAGAAATCAGACAACACTAAAATAGCAGCACCACAAGATTTACCAT
TCTCACCTATCTTCAATATCCTTGTTGGATTTTATCAAGCCAAATCATTA
CTGACGATAAAGCTTGATGATTTGTACCAGCCACCAACATCATTTATATC
AGGATTTTTCAACATTGAAATGATCACCGACAACCTTCAATCTTTTTGTC
CATCAATTACAACAACTGTTATTTACAGAGAATTCTTGAAAACATATGCT
TCAACTATTATTATGCTGACAACAGTTCTATCATCGTtattatttacaaa
attgattaaTCGGGTTTGCAATAAAAGAACATCTTCCATAATAGACACTT
TTTCCATAGGCTTTTTTACCATAATGGCATTCTGTTATAAAAACTTATCC
AAAATATCTTTCAATTTCATACATTGTGTCCCAATTAAAGAGACAGCTGT
TTTGTATATTGCAGGAGATATTGAATGTTATACCAGTTGGCAAATcgcaa
atttcattttcttggcAATTTGGGTGCTTCCTTTCCCTATTGCATCTACA
GCAGCATATAACCTTCACAAGAAAAAACACATCAGTGTGTGGCTGTTTAT
AACATGCTTGACATTTCCAATTATGACACCTTTCTTTTATTTGAGGAAGA
AACAAAGATGGCTCTCAGaatcagaagaaaaaaaaatacaagaaaaactt
tatgaaaCATTTGAAACACCATATAAAACCAACATGTTTTGGTGGGAAGC
TTGGCGCTTATATGAACGGTTGATCTTATCTTTCTTGGCAACATATCTAA
TTGATCCAGTAGTCCGCATGACCATTCTAGCACCTATCATAACAATCTAC
TTGATAATTCATTACTATGTTAAtccttataaaaacaatgttctTACTAA
ACTGGATTTATCTTcatatttttgtttatgtttacaTGCGGTGATCAATA
TGTTTCGATCAGTTGTATACATTCATAGTTTACCTCTACAATTTCCAATA
GACTTTGGAGTGAAAATCACAAATGTAATGGAGGAAATGTTTACACCTTT
ATGGATATTACTAGCATTGCTGATacataaaaaactta Coding sequence (CDS) from alignment at scaffold_397:75492..78779 >TCONS_00063662 ID=TCONS_00063662|Name=TCONS_00063662|organism=Clytia hemisphaerica|type=CDS|length=3285bp|location=Sequence derived from alignment at scaffold_397:75492..78779 (Clytia hemisphaerica) TTCCACAAAAATACATTACAAACTCTTATAAGATCTGAAAGCTGCATTTT GAATTTAGAGTTGACAAACTTCAGAGAAAACATACTTTTAACCAGTATTA TTGATATAAGCAGAGACAACTCTTCTCCTCACAAGAGCAAATTGAACGTT AATAAGTGTGATATTTATGGAAACTACCGACAGTATGAATCATACATCAA AGAGTATATTTTCAAAGTACATGCTTCCAAAGTTATTATTGAAAACTCAA ATATCACACTGAATCATGCATTTTCAATGTTTGAGTGCTTGGACAGTTGT GTTCACTGCAGTCTGGAAATAAAGAAAAGTTATTTCTCTAAGAAtagatt tgaatttaaaatgataTATGTTCCTTGCAACAATCTTTTCATCAGTAACA GCTATTTTGAACAAAATACAATTATACAAAATATGATTAAAGATTCAGAA AAGAAGGACAATCGCAATGCAAGATTTTTATTGACCACAACAAAGTTTAT GAACAATAGCTGTTacaacttgatcaatttccagaAGGAAGTTACGATTT CTAAAGTAGTGatgcaaaaaaatattattgggAATACTGGAATACAATCG CGTCAAAATATAGTGATCGAAAGTAGCGAGTTTGTACAAAACAGAATCAA ACAGTTTTTCATAATCCAATATCGACATTTGAAAATAAGACAGTCTTACT TCAAACAAAACTATATACAACGTGGCAGCATAATTcagcaaagatttgga agcaaaaataacattttaaaacttgacattttttcatcaaaattcatTGA TAATGAACTGGCGCATGCCATGATAGAAACTTGGTATGGTAAAACAAACA TTCAAAACAGTTTCATTAATGGAAATAAACTTGTCAATATCATGGCATCT AAAGTCAGTACATTGAATTTTGTTTCAACAAATATTGAGCATAACATTGC TTCTGATTCATTGTTCTACATTGAGTTAACTGATAGACACGAACAAAGTG TGAGTGAGTTTGTTTTTGAGAACAATACAGCAACAAGAAACTTTGCCAAA ATTGACTTTTTGACCAGTTTCAAGTCTACGGTAACATTGAAACATAATAA CATTACTGAGAATGATTTTTATAGCTTTGCAACATTCCATAAAGGAACAT TTTGGGTTGAATCCTTAAGCCTTCAAGACAATAAAGTAAGTGGCATTGGA AAGATGATAAAGTATGATGGTTGTGATGCAAAAGGTTTGAGTGTGAACCT TAAAGATATTTACTATTCAACTTCAAAAGTGAAACAACCTGGCAATGCCA TCATGGAATTCAGATTAAAACATGGGAAGTTTACAATGAGAAATATATCA GTTGTTTTAAAGGGAAGGCCAAATTCAAAATCCAATGTGATGTCCTTATC CCTTGATATAAGAAATACTGATCATATTCTTGAAGGATTTTCTGTTGCTT GTCCAATAAACCAGAATCCTGTTTCATCAATCACTAAATCAAAAACAGAA TTTGATTATCAACTTGTTTGTCAACCTTGTGACAGGGGTCTATACATGAC TTTAAGTGGgcataaaaaaatcaaaggcATACTAAAAGCATACAGGCTTG AAAACATTAATACTGACCAAGAAGAAAATATTACAGTAATTGACAGATTC CTTGAAGTGAAATCTAACTTATCATGCAAATTTTGCCCACCCGGGGGAGA CTgtagaaaacaaatcaaaagtcAAGACAGTTTTTAtggttttatcaata aaaatcatgaaatgGAATTTATCTCATGTCCAGATTTATACTGCTGTTCA AACCATGGAAAACCTTGTAATTCATTTAATACATGTAATCTTTATCGTAC CGGTACTCTGTGTGGAAGTTGTAAAAAAGGATATTATGTGAACTATTTTT CTAATAATTGCATACCATCGTTTAGATGCAGTAACAATCATCGTGTTTGG TTttggtttatttattttgcaTTTTCAATTACTTTGGCATTGTTGTTGTG CTTTACAAAGCCAATTGtatcatatttaaaaaataacaagtctaaaatca tttcttcaatcaaacaaaaactACCGTGCTGTTTTAGGAAGCATGAACAG AATCCTAGTCCATCATCAAAAAGTCTTAAGGCTGACCTTGGAAGTGAATT ATGCGTAATAAACAAAAGCAATTACCAAGAGACAAATGAACATCTACTGG TGGAGAAATCAGACAACACTAAAATAGCAGCACCACAAGATTTACCATTC TCACCTATCTTCAATATCCTTGTTGGATTTTATCAAGCCAAATCATTACT GACGATAAAGCTTGATGATTTGTACCAGCCACCAACATCATTTATATCAG GATTTTTCAACATTGAAATGATCACCGACAACCTTCAATCTTTTTGTCCA TCAATTACAACAACTGTTATTTACAGAGAATTCTTGAAAACATATGCTTC AACTATTATTATGCTGACAACAGTTCTATCATCGTtattatttacaaaat tgattaaTCGGGTTTGCAATAAAAGAACATCTTCCATAATAGACACTTTT TCCATAGGCTTTTTTACCATAATGGCATTCTGTTATAAAAACTTATCCAA AATATCTTTCAATTTCATACATTGTGTCCCAATTAAAGAGACAGCTGTTT TGTATATTGCAGGAGATATTGAATGTTATACCAGTTGGCAAATcgcaaat ttcattttcttggcAATTTGGGTGCTTCCTTTCCCTATTGCATCTACAGC AGCATATAACCTTCACAAGAAAAAACACATCAGTGTGTGGCTGTTTATAA CATGCTTGACATTTCCAATTATGACACCTTTCTTTTATTTGAGGAAGAAA CAAAGATGGCTCTCAGaatcagaagaaaaaaaaatacaagaaaaacttta tgaaaCATTTGAAACACCATATAAAACCAACATGTTTTGGTGGGAAGCTT GGCGCTTATATGAACGGTTGATCTTATCTTTCTTGGCAACATATCTAATT GATCCAGTAGTCCGCATGACCATTCTAGCACCTATCATAACAATCTACTT GATAATTCATTACTATGTTAAtccttataaaaacaatgttctTACTAAAC TGGATTTATCTTcatatttttgtttatgtttacaTGCGGTGATCAATATG TTTCGATCAGTTGTATACATTCATAGTTTACCTCTACAATTTCCAATAGA CTTTGGAGTGAAAATCACAAATGTAATGGAGGAAATGTTTACACCTTTAT GGATATTACTAGCATTGCTGATacataaaaaactt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00063662-exon-scaffold_397-1491911889:75492..78779 | TCONS_00063662-exon-scaffold_397-1491911889:75492..78779 | Clytia hemisphaerica | exon |
TCONS_00063662-exon-scaffold_397-1510915933:75492..78779 | TCONS_00063662-exon-scaffold_397-1510915933:75492..78779 | Clytia hemisphaerica | exon |
TCONS_00063662-exon-scaffold_397-1575043694:75492..78779 | TCONS_00063662-exon-scaffold_397-1575043694:75492..78779 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_397 | supercontig | scaffold_397:75492..78779 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR012334 | Pectin_lyas_fold |
IPR011050 | Pectin_lyase_fold/virulence |
Blast
The following BLAST results are available for this feature:
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