TCONS_00063671 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063671
Unique NameTCONS_00063671
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length250

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063671 ID=TCONS_00063671|Name=TCONS_00063671|organism=Clytia hemisphaerica|type=transcript|length=250bp
TCATGACCAAATCAATACCCATATAAGATCTTTAAATTCTAAGCAAAGAG
ATATTTTTGATATAGTACTAAATTGGGGAAAAATGTATGTGCAAAATTCC
AAGTCCAATAATCCTATActattgagaatatttttaacaGGTGGGGCGGG
CGTAGGAAAATCTCACTTAATTAAATGTGTTTACAATTGTTTGTCAAAAG
TCCTAGCATATAAAAGTGATGAGCTAGAGAAGCCACGTATTATTAAATTN
Run BLAST on NCBI

transcript from alignment at scaffold_397:202195..202444

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063671 ID=TCONS_00063671|Name=TCONS_00063671|organism=Clytia hemisphaerica|type=transcript|length=250bp|location=Sequence derived from alignment at scaffold_397:202195..202444 (Clytia hemisphaerica)
NAATTTAATAATACGTGGCTTCTCTAGCTCATCACTTTTATATGCTAGGA
CTTTTGACAAACAATTGTAAACACATTTAATTAAGTGAGATTTTCCTACG
CCCGCCCCACCtgttaaaaatattctcaatagTATAGGATTATTGGACTT
GGAATTTTGCACATACATTTTTCCCCAATTTAGTACTATATCAAAAATAT
CTCTTTGCTTAGAATTTAAAGATCTTATATGGGTATTGATTTGGTCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039913XLOC_039913Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063671-exon-scaffold_397-1491911889:202195..202444TCONS_00063671-exon-scaffold_397-1491911889:202195..202444Clytia hemisphaericaexon
TCONS_00063671-exon-scaffold_397-1510915933:202195..202444TCONS_00063671-exon-scaffold_397-1510915933:202195..202444Clytia hemisphaericaexon
TCONS_00063671-exon-scaffold_397-1575043694:202195..202444TCONS_00063671-exon-scaffold_397-1575043694:202195..202444Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_397supercontigscaffold_397:202195..202444 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.6987	7.56791	12.8195	5.64275	0	0.816941	3.94242	1.84542	0.782405	1.60038	5.43678	3.06337	4.07881	0.529486	2.17655	7.03195	1.15099	3.33102	1.62986	3.95469	1.72471	5.42302	2.63696	3.59237	0.964332	0	7.36635	6.36666	4.73756	4.76014
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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