TCONS_00063714 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063714
Unique NameTCONS_00063714
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1023

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063714 ID=TCONS_00063714|Name=TCONS_00063714|organism=Clytia hemisphaerica|type=transcript|length=1023bp
TGCGTGTCAACTAGAAGCAGGCCATCAGAAAGATGGCAATTATTATTGCT
GGTGTTGTGATATGAAGGCCTCTCGTAGCGCTGACCTGGCCTATGTATTC
GGGTGCACCAGACAATCACTCCAAGATAAAATAAACAGATTAACCAAAAC
TAGcTATGGAAAACAATGTGTACATAATCAAAAAATGTCGATACTTGATG
GAATTCCAAAGGTAGAGATCGtggaagaattgaaaaaacgtGGCGTCCAA
GTCAACAAAGACCAAAATAAAGACGTGGTTTTGAAACAGCTTGAAGATAT
TTTCGCAGGAGTCCAACACCTTCCAGCATTACTGTTCGAATCGGGAAAGA
CAAGCCTTGAAAAGGTCGGTTTGGAATCGTACGAAGTACTTGCATGCGAC
CCTTTACACACCTTCAAAGGTTTGACGACCAATCTTTACCAAGAGATCCC
TCGTCACCTTCAGggcgaagaaaaaaatctttttaaggaCTCGGCGCGAG
CATCCTTTCATGGCAAAGAGGCAAAAAATGGTGGAGACTACAGGCGAAGC
CTGGTGGACCTGACGATTTACTTGGATGGAGAAATGACTGATGCGTACGT
CAAACTCATGAGGCAGCTCGCTGAATTACAAGAAATTGCATATTCCGGTG
AAGAAAAGCGTACAGCCAAGTCGATTTTACGCTTCCACAACGTGTCATTC
TTGCACGCAGACTTGATGATTGAGCTTTTCGAAAAGCAGAAATCCATGAG
CCGAAGAAAACTGTTTGGACAGTACAACCATTCGCTGACCAGTCATGCGC
CAATCCAATATCGGATTCTGGATTTGGTTTCGGCAAATACTGAGCAAGAG
GAGGCTGCATTCAATTTCATGAAGGAAGTCAGTAAACATGCTTCCAATCA
CCATCCCGATAATATACTGCTGACCTGCTTTCTTCGTATCCAAATCCGAG
AAGACTGGCAACGTCACTTGGGCATCCTGAAAAAGGAAACAAGAAATGCT
ATTAGCAAACACGGCGATTTGTT
Run BLAST on NCBI

transcript from alignment at scaffold_399:76697..79555+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063714 ID=TCONS_00063714|Name=TCONS_00063714|organism=Clytia hemisphaerica|type=transcript|length=2859bp|location=Sequence derived from alignment at scaffold_399:76697..79555+ (Clytia hemisphaerica)
TGCGTGTCAACTAGAAGCAGGCCATCAGAAAGATGGCAATTATTATTGCT
GGTGTTGTGATATGAAGGCCTCTCGTAGCGCTGACCTGGCCTATGTATTC
GGGTGCACCAGACATTCACTCCAAGATAAAATAAACAGATTAACCAAAAC
TAGGTAAGGAATTAAAGAGGGTCAACTTTTAACAGGCTTTTCATGTGTGC
GACCGCGGAAGTAGATCAGAAAAGCTTAATATAAATCAATGGTGATTTAG
GGGGAGGTCTGAAGTGGCAAAGTAATGTTAaacactttctttttatttta
tcaaaaattttagcTATGGAAAACAATGTGTACATAATAAAAAAATGTCG
ATACTTGATGGAATTCCAAAGGTAGCGATCGTGTAAGAATTGAAAAAACC
AGGCGTCCAAGTCAACAAAGACCAAAATAAAGACGTGGTTTTGAAACAGC
TGGAAGATATTTTCGCAGGTATacaccatggaggtataaagaaacaggag
aagtatgctattgtaaccaagctcgccctacgattaaaaaagttacgatg
tatgcatgctcataatctcataNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgg
gcgagcttagaatttcttttgatacattttataaaagaaatcaaaagact
ttaacgaccaattaccgacacattcaactcctgtttttctttatacctct
atgtaTACACGATGTTTCAATCCGAAAATGTTGAagcaaaaacatgaaaa
cagcacaaaacgttgtttttAATTATCGTCTCGGTTTCTTGTTTAGGAGT
CCAACACCTTCCAGCATTACTGTTCGAATCGGGAAAGACAAGCCTTGAAA
AGGTCGGTTTGAATCATACGAAGTACTTGGAAGCGACCCTTTACACACCT
TCAAAGGTTTGACGACCAATCTTTACCAAGAGATCCCTCGTCACCTTCAG
ggcgaagaaaaaaatctttttaaggaCTCGGCGCGAGCATCNCGTATTCG
GGTGCACCAGACAATCACTCCAAGATAAAATAAACAGATTAACCAAAACT
AGGTAAGGAATTAAAGAGGGCCAACTTTTAGCAGGCTTTTCATGTGTGCG
AAGTAGACCAGAAAAGCTTAATATAAATCAAATGTGATTTAGGGGGAGGT
TTGAAGTGGCAAAGTAATGTTCaacactttctttttattttatcaaaaat
tttagcTATGGAAAACAATGTGTACATAATCAAAAAATGTCGATACTTGA
TGGAATTCCAAAGGTAGAGATCGtggaagaattgaaaaaacgtGGCGTCC
AAGTCAACAAAGACCAAAATAAAGACGTGGTTTTGAAACAGCTTGAAGAT
ATTTTCGCAGGTATACACGATGTTTCAATCCGAAAATGTTGAagcaaaaa
catgaaaacagcACTTTTAATTATCTTCTCGGTTTCTTGTTTAGGAGTCC
AACACCTTCCAGCATTACTGTTCGAATCGGGAAAGACAAGCCTTGAAAAG
GTCGGTTTGGAATCGTACGAAGTACTTGCATGCGACCCTTTACACACCTT
CAAAGGTTTGACGACCAATCTTTACCAAGAGATCCCTCGTCACCTTCAGg
gcgaagaaaaaaatctttttaaggaCTCGGCGCGAGCATCCTTTCATGGC
AAAGAGGCAAAAAATGGTGGAGACTACAGGCGAAGCCTGGTGGACCTGAC
GATTTACTTGGATGGAGAAATGACTGATGCGTACGTCAAACTCATGAGGC
AGCTCGCTGAATTACAAGAAATTGCATATTCCGGTGAAGAAAAGCGTACA
GCCAAGTCGATTTTACGCTTCCACAACGTGTCATTCTTGCACGCAGACTT
GATGATTGAGCTTTTCGAAAAGCAGAAATCCATGAGCCGAAGAAAACTGT
TTGGACAGTACAACCATTCGCTGACCAGTCATGCGCCAATCCAATATCGG
ATTCTGGATTTGGTTTCGGCAAATACTGAGCAAGAGGAGGCTGCATTCAA
TTTCATGAAGGAAGTCAGTAAACATGCTTCCAATCACCATCCCGATAATA
TACTGCTGACCTGCTTTCTTCGTATCCAAATCCGAGAAGACTGGCAACGT
CACTTGGGCATCCTGAAAAAGGAAACAAGAAATGCTATTAGCAAACACGG
CGATTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039937XLOC_039937Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063714-exon-scaffold_399-1491911889:76697..76809TCONS_00063714-exon-scaffold_399-1491911889:76697..76809Clytia hemisphaericaexon
TCONS_00063714-exon-scaffold_399-1510915933:76697..76809TCONS_00063714-exon-scaffold_399-1510915933:76697..76809Clytia hemisphaericaexon
TCONS_00063714-exon-scaffold_399-1575043694:76697..76809TCONS_00063714-exon-scaffold_399-1575043694:76697..76809Clytia hemisphaericaexon
TCONS_00063714-exon-scaffold_399-1491911889:78409..78448TCONS_00063714-exon-scaffold_399-1491911889:78409..78448Clytia hemisphaericaexon
TCONS_00063714-exon-scaffold_399-1510915933:78409..78448TCONS_00063714-exon-scaffold_399-1510915933:78409..78448Clytia hemisphaericaexon
TCONS_00063714-exon-scaffold_399-1575043694:78409..78448TCONS_00063714-exon-scaffold_399-1575043694:78409..78448Clytia hemisphaericaexon
TCONS_00063714-exon-scaffold_399-1491911889:78602..78756TCONS_00063714-exon-scaffold_399-1491911889:78602..78756Clytia hemisphaericaexon
TCONS_00063714-exon-scaffold_399-1510915933:78602..78756TCONS_00063714-exon-scaffold_399-1510915933:78602..78756Clytia hemisphaericaexon
TCONS_00063714-exon-scaffold_399-1575043694:78602..78756TCONS_00063714-exon-scaffold_399-1575043694:78602..78756Clytia hemisphaericaexon
TCONS_00063714-exon-scaffold_399-1491911889:78841..79555TCONS_00063714-exon-scaffold_399-1491911889:78841..79555Clytia hemisphaericaexon
TCONS_00063714-exon-scaffold_399-1510915933:78841..79555TCONS_00063714-exon-scaffold_399-1510915933:78841..79555Clytia hemisphaericaexon
TCONS_00063714-exon-scaffold_399-1575043694:78841..79555TCONS_00063714-exon-scaffold_399-1575043694:78841..79555Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_399supercontigscaffold_399:76697..79555 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0425017	0	0	4.0337	2.13805	2.39407	1.61434	2.87486	3.14109	2.52535	1.08552	2.59978	1.55186	0	0	0	0.134101	0.138994	0	0	0	0	0	2.11366	2.15448	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063714 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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