TCONS_00063775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063775
Unique NameTCONS_00063775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063775 ID=TCONS_00063775|Name=TCONS_00063775|organism=Clytia hemisphaerica|type=transcript|length=313bp
ccaccctggattttttattttccataccaccctggacgtcacacctcctc
aacatagggggtacagactatttctgaaATAGCCCATTTGAAcagagaaa
ttgaaaatttgaaaagcgTCATTCAAAAGCAAAACCAAGCTGCGAATGAA
GTTGTGGAAAATATGACGACGATCGATCGTTTGGTTTGGGGAGCAGAATA
TTTTCACGAAGGAAATAAATCTTCACTTTTGTACCCTTCTTATGGTAACT
GGTACAAAGCAATTTCTGCGATGATGgggaataaaaaaatgttcaaaaag
gATAAATATTTGT
Run BLAST on NCBI

transcript from alignment at scaffold_40:133851..134163

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063775 ID=TCONS_00063775|Name=TCONS_00063775|organism=Clytia hemisphaerica|type=transcript|length=313bp|location=Sequence derived from alignment at scaffold_40:133851..134163 (Clytia hemisphaerica)
ACAAATATTTATcctttttgaacatttttttattcccCATCATCGCAGAA
ATTGCTTTGTACCAGTTACCATAAGAAGGGTACAAAAGTGAAGATTTATT
TCCTTCGTGAAAATATTCTGCTCCCCAAACCAAACGATCGATCGTCGTCA
TATTTTCCACAACTTCATTCGCAGCTTGGTTTTGCTTTTGAATGAcgctt
ttcaaattttcaatttctctgTTCAAATGGGCTATttcagaaatagtctg
taccccctatgttgaggaggtgtgacgtccagggtggtatggaaaataaa
aaatccagggtgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039989XLOC_039989Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063775-exon-scaffold_40-1491911889:133851..134163TCONS_00063775-exon-scaffold_40-1491911889:133851..134163Clytia hemisphaericaexon
TCONS_00063775-exon-scaffold_40-1510915933:133851..134163TCONS_00063775-exon-scaffold_40-1510915933:133851..134163Clytia hemisphaericaexon
TCONS_00063775-exon-scaffold_40-1575043694:133851..134163TCONS_00063775-exon-scaffold_40-1575043694:133851..134163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:133851..134163 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.50242	1.18305	4.45646	7.72525	5.05147	2.74879	6.67095	5.34739	3.35116	5.37602	1.80481	2.60751	5.94787	1.97829	1.87816	2.45767	3.36385	0	3.75579	2.97499	3.07652	7.17059	5.05205	10.1511	4.65731	5.34595	5.97671	8.10123	6.8571	9.36546
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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