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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063819 ID=TCONS_00063819|Name=TCONS_00063819|organism=Clytia hemisphaerica|type=transcript|length=284bp
AAGGAAAGGTGTAAAAGTCGTGAAAcggtttttgaaatatttttaaacat
tttgttgTAGTATACATTGCAGAAAATAAGTAACAATACAACAGATGGAA
TTATATTCTGATATGAATTGTGGTGATTATATTCCTTCTAGTCCAAGTCC
AAAGTCAAGAAAacgatcaattttgtcatcaatttgtcaaagaaacaGAG
AAAAGCCACAGTCGCAACCTAAAGGTAAACAAAGCAAGGAAAAACCCTCC
AGCTTTATGCCAAAGAAAACTCAAAGAAAAGAAG Run BLAST on NCBI transcript from alignment at scaffold_401:9921..11295+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063819 ID=TCONS_00063819|Name=TCONS_00063819|organism=Clytia hemisphaerica|type=transcript|length=1375bp|location=Sequence derived from alignment at scaffold_401:9921..11295+ (Clytia hemisphaerica)
AAGGAAAGGTGTAAAAGTCGTGAAAcggtttttgaaatatttttaaacat
tttgttgTAGTATACATTGCAGAAAATAAGTAACAATACAACAGATGGAA
TTATATTCTGATATGAATTGTGGTGATTATATTCCTTCTAGTCCAAGTAA
GTTTAAATCCTTAAAATTAATTGATTTTAatacaattatttttttacaat
ttatttgTATACCTATAAGTATAACTTCTCCAAAGTATCCTAAAGATTTT
CACCTCTGGTTACAGAGTTTGACGTTATGTAGTGTTCAGAGACTTGTTTT
ATGGGTATCATTTTAGTGTGCTGTATATTTTCGGCTATAAATTGTCATAA
AAAATTAGATATAAAAGGTATTGTTTTTTTCATTAGACTAGGTTTTAAAG
GGGAAGTTAAGATTTCACTAGATCAGTAGATGttgtttttttgcactttt
gCGATAATTACTTTTGACGTCTGACCAGCCAGTGTTTTCAACttctttta
aagcttttaaaagCAAATTCAATACTATTCTATATTCTACAAATATAAGT
TATTCCTGACtgtttgaaaataatataatttattataatatataattttg
aTATTAGGTCCAAAGTCAAGAAAacgatcaattttgtcatcaatttgtca
aagaaacaGAGAAAAGCCACAGTCGCAACCTAAAGGttagtataatatat
tattaaaATTTATATCCAGATCCCTTGGCTTTGTGTCCTAATTTTTGGTT
TAATGTTGAACATACATTTGCGCCAATGCAGAATACAATAATCTTTTTAT
TGGAATGATAGAATAAttcttgtaaataaaaagacacacaaGTAGTACAG
TTGAcaataaatataataaaagttttacaaaatagAAGTAGTAGTAGGTA
GTAGTAGTTGGTATGTAGCCCATGTAGTCGACAAATTTGAAtagtttttt
cttcattttatcattttacatTCCAGGTGATTCTTTGGGATCCAAACCCT
TCAAACAATAACTAACTGTAACTCTGATAACTTTTTAGATTAATGAGACA
GTTTCAGTGCAAAATGTCATTTCCAGTCACtataatttttttagaaaata
tttactGAAGTTAGTTGTCTTTACTTTTTTTAGAACAAATGACATTTTGT
GAATCACTTCTTTCCCTTTTCCAGAAATAAGTTCAAGATGTGTTCTAGTA
AATAATTCTATATTTCTATATTATCTATATTTTTGAATCTCGCCTCTTTC
GCAGGCATTCTtgttcataaaaaaatgttctGTTTAGTTTTTTACCATTC
ACATTTTCATATCAGGTAAACAAAGCAAGGAAAAACCCTCCAGCTTTATG
CCAAAGAAAACTCAAAGAAAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063819-exon-scaffold_401-1491911889:9921..10066 | TCONS_00063819-exon-scaffold_401-1491911889:9921..10066 | Clytia hemisphaerica | exon |
| TCONS_00063819-exon-scaffold_401-1510915933:9921..10066 | TCONS_00063819-exon-scaffold_401-1510915933:9921..10066 | Clytia hemisphaerica | exon |
| TCONS_00063819-exon-scaffold_401-1575043694:9921..10066 | TCONS_00063819-exon-scaffold_401-1575043694:9921..10066 | Clytia hemisphaerica | exon |
| TCONS_00063819-exon-scaffold_401-1491911889:10528..10605 | TCONS_00063819-exon-scaffold_401-1491911889:10528..10605 | Clytia hemisphaerica | exon |
| TCONS_00063819-exon-scaffold_401-1510915933:10528..10605 | TCONS_00063819-exon-scaffold_401-1510915933:10528..10605 | Clytia hemisphaerica | exon |
| TCONS_00063819-exon-scaffold_401-1575043694:10528..10605 | TCONS_00063819-exon-scaffold_401-1575043694:10528..10605 | Clytia hemisphaerica | exon |
| TCONS_00063819-exon-scaffold_401-1491911889:11236..11295 | TCONS_00063819-exon-scaffold_401-1491911889:11236..11295 | Clytia hemisphaerica | exon |
| TCONS_00063819-exon-scaffold_401-1510915933:11236..11295 | TCONS_00063819-exon-scaffold_401-1510915933:11236..11295 | Clytia hemisphaerica | exon |
| TCONS_00063819-exon-scaffold_401-1575043694:11236..11295 | TCONS_00063819-exon-scaffold_401-1575043694:11236..11295 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_401 | supercontig | scaffold_401:9921..11295 + |
Blast
The following BLAST results are available for this feature:
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