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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063833 ID=TCONS_00063833|Name=TCONS_00063833|organism=Clytia hemisphaerica|type=transcript|length=516bp
GATCAGACATACAAAAGAACTCCATATACCGGAAGATACACCAAGAAAGA
ACGAATTTTCGATGGCAGAACTTGACTTGGTACAATATCCTGAAGGAAAG
ATTGTTAACATTATTCCACAAACAACTCACGCATTCGAACTGAATTTCAA
AATCCAGTATCAGAAAGTCGATCACCAGACGCAAGTGTTGGAGTTCACTG
ATGGCTACGGGGTTCATAAAGGTCCTCAAGTCACCATGAAAGGCGATTGG
ATGACGTTTGATTATCGCGATCTAAACTCTAAGAAAGTCTTGCTTCAACC
TGATACCACTTATAACGTCACCATTCGACAATATAAGACTGGGGAAGATG
AGAAAGGGCGATTACGTATTCTAATTAATAATGTCCAAAAATTTCCATCT
TTTCTTCTTGGAAATGTTCCTCGTTACATGAACATCAAATGTCTGATTGG
TGATCCATTTAAGAAGTTGCCTTCAAGTCCAGCTGTGGTGACTGATTTGA
ATTATAGCACAACACC Run BLAST on NCBI protein sequence of TCONS_00063833-protein >TCONS_00063833-protein ID=TCONS_00063833-protein|Name=TCONS_00063833-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
IRHTKELHIPEDTPRKNEFSMAELDLVQYPEGKIVNIIPQTTHAFELNFK
IQYQKVDHQTQVLEFTDGYGVHKGPQVTMKGDWMTFDYRDLNSKKVLLQP
DTTYNVTIRQYKTGEDEKGRLRILINNVQKFPSFLLGNVPRYMNIKCLIG
DPFKKLPSSPAVVTDLNYSTT Run BLAST on NCBI transcript from alignment at scaffold_403:926..2284- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063833 ID=TCONS_00063833|Name=TCONS_00063833|organism=Clytia hemisphaerica|type=transcript|length=1359bp|location=Sequence derived from alignment at scaffold_403:926..2284- (Clytia hemisphaerica)
GATCAGACATACAAAAGAACTCCATATACCGGAAGATACACCAAGAAAGA
ACGAATTTTCGATGGCAGGTATGTATTACCGTGAAAAACACAGGCACAAG
CACAGGTCACATATCGCCCTGTACCGACCAATAGAGATTCTATTCAGCGC
GCAAGCAAGGATGTTTCTTAAGGGAAGAGGAATTCATAAATAGTAAATTT
TTATATTTGATTCTTTCTACAGTGATTAGATTGACACATGCGCGATAAAA
TTTATATTAGTGGTCCGCAGAGGTTGATATATTCTATGAGAACTCAACCT
CTGATACTATGAGGACCTCTGTTCCCGTTTCATATCAGACACATATTTCA
TGTCAGGACAGTGTCTGTCTATTGTTATATTGTGCTGAAAAAAACAAAAC
ATGTTTTTATTTTTCCCTTTCTGACCAATCTTGCTCCACATCCGTGTCAA
GTCAATGTGAAAAAGCTTGTGAACTAAAATTGATGAGTCAGCAAACGATA
TATCTCTTATTTAAAAACAAAACCTTTAACAAAACTTTTTACCAAGCTAA
AATATATGTATACTTCACGACAAGTCATGTTTTTGATATCTTTACCTTAG
TCCCCTACCTTACCCCGTAGAGAAAAGCCTCTTAAAAACGTAGTACAGAG
CTGGAGCAGTTGCTGTTTAAGTACTTAAAGTACTACTCAAAAATTGAAAT
TTAGTGACTGTTATTGAAAAGGCAGACGAAAATAACCCTATGTTTTACTA
AGGACATCCGTGTGTCACATATCTGTAGAAACCCTTGCCCCTGTGAATAA
TAGAATTTCTATCCCGATTCCATCGGGGCTCCGAGACAGGATTGTGTCAC
GGAAACTGCCGAAAATCTAAGATCTAGAAACCCTTTTATGTGAATATCTT
TCTCTCTTTAGAACTTGACTTGGTACAATATCCTGAAGGAAAGATTGTTA
ACATTATTCCACAAACAACTCACGCATTCGAACTGAATTTCAAAATCCAG
TATCAGAAAGTCGATCACCAGACGCAAGTGTTGGAGTTCACTGATGGCTA
CGGGGTTCATAAAGGTCCTCAAGTCACCATGAAAGGCGATTGGATGACGT
TTGATTATCGCGATCTAAACTCTAAGAAAGTCTTGCTTCAACCTGATACC
ACTTATAACGTCACCATTCGACAATATAAGACTGGGGAAGATGAGAAAGG
GCGATTACGTATTCTAATTAATAATGTCCAAAAATTTCCATCTTTTCTTC
TTGGAAATGTTCCTCGTTACATGAACATCAAATGTCTGATTGGTGATCCA
TTTAAGAAGTTGCCTTCAAGTCCAGCTGTGGTGACTGATTTGAATTATAG
CACAACACC Coding sequence (CDS) from alignment at scaffold_403:926..2284- >TCONS_00063833 ID=TCONS_00063833|Name=TCONS_00063833|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_403:926..2284- (Clytia hemisphaerica)
AACTTGACTTGGTACAATATCCTGAAGGAAAGATTGTTAACATTATTCCA
CAAACAACTCACGCATTCGAACTGAATTTCAAAATCCAGTATCAGAAAGT
CGATCACCAGACGCAAGTGTTGGAGTTCACTGATGGCTACGGGGTTCATA
AAGGTCCTCAAGTCACCATGAAAGGCGATTGGATGACGTTTGATTATCGC
GATCTAAACTCTAAGAAAGTCTTGCTTCAACCTGATACCACTTATAACGT
CACCATTCGACAATATAAGACTGGGGAAGATGAGAAAGGGCGATTACGTA
TTCTAATTAATAATGTCCAAAAATTTCCATCTTTTCTTCTTGGAAATGTT
CCTCGTTACATGAACATCAAATGTCTGATTGGTGATCCATTTAAGAAGTT
GCCTTCAAGTCCAGCTGTGGTGACTGATTTGAATTATAGCACAACAATCA
GACATACAAAAGAACTCCATATACCGGAAGATACACCAAGAAAGAACGAA
TTTTCGATGGCAGAACTTGACTTGGTACAATATCCTGAAGGAAAGATTGT
TAACATTATTCCACAAACAACTCACGCATTCGAACTGAATTTCAAAATCC
AGTATCAGAAAGTCGATCACCAGACGCAAGTGTTGGAGTTCACTGATGGC
TACGGGGTTCATAAAGGTCCTCAAGTCACCATGAAAGGCGATTGGATGAC
GTTTGATTATCGCGATCTAAACTCTAAGAAAGTCTTGCTTCAACCTGATA
CCACTTATAACGTCACCATTCGACAATATAAGACTGGGGAAGATGAGAAA
GGGCGATTACGTATTCTAATTAATAATGTCCAAAAATTTCCATCTTTTCT
TCTTGGAAATGTTCCTCGTTACATGAACATCAAATGTCTGATTGGTGATC
CATTTAAGAAGTTGCCTTCAAGTCCAGCTGTGGTGACTGATTTGAATTAT
AGCACAACAATCAGACATACAAAAGAACTCCATATACCGGAAGATACACC
AAGAAAGAACGAATTTTCGATGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063833-exon-scaffold_403-1575043694:2217..2284 | TCONS_00063833-exon-scaffold_403-1575043694:2217..2284 | Clytia hemisphaerica | exon |
| TCONS_00063833-exon-scaffold_403-1575043694:926..1373 | TCONS_00063833-exon-scaffold_403-1575043694:926..1373 | Clytia hemisphaerica | exon |
| TCONS_00063833-exon-scaffold_403-1510915933:2217..2284 | TCONS_00063833-exon-scaffold_403-1510915933:2217..2284 | Clytia hemisphaerica | exon |
| TCONS_00063833-exon-scaffold_403-1510915933:926..1373 | TCONS_00063833-exon-scaffold_403-1510915933:926..1373 | Clytia hemisphaerica | exon |
| TCONS_00063833-exon-scaffold_403-1491911889:2217..2284 | TCONS_00063833-exon-scaffold_403-1491911889:2217..2284 | Clytia hemisphaerica | exon |
| TCONS_00063833-exon-scaffold_403-1491911889:926..1373 | TCONS_00063833-exon-scaffold_403-1491911889:926..1373 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_403 | supercontig | scaffold_403:926..2284 - |
Blast
The following BLAST results are available for this feature:
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