TCONS_00063834 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063834
Unique NameTCONS_00063834
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063834 ID=TCONS_00063834|Name=TCONS_00063834|organism=Clytia hemisphaerica|type=transcript|length=436bp
gaaattttctgatttttgtaacccttagtgagactttgaaaggtgaaaaa
aacgaCCCATACACACATAcctgcacatacccagcacccatttttgccta
agtaccccccagGCTTTATACCCTGCctcctttttgtctttttcaccCAC
TCCCTAAACTGGGTTTAGAAAAAATGCAATATAGAATTTCAGTACAAAAC
ACCATCGAttctatttcaaaaacattcCACCATTATATTCCAGTTCAAAA
CATTTCCTACCATTCATCCCAGCTCAAAATTGATTTCACCATAATTAACT
ACAGCTCGTAAATTCTGCCATAATCATAATAAAAACATTTGGATCAGGTT
TGCAATGCAATGAcatcaatgttttgaaaaaattagcaATGCAATGTTAA
TAAATCTATAGGAAAATAGCTAAAAGCTAAAAAACA
Run BLAST on NCBI

transcript from alignment at scaffold_403:9206..9641

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063834 ID=TCONS_00063834|Name=TCONS_00063834|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at scaffold_403:9206..9641 (Clytia hemisphaerica)
TGTTTTTTAGCTTTTAGCTATTTTCCTATAGATTTATTAACATTGCATtg
ctaattttttcaaaacattgatgTCATTGCATTGCAAACCTGATCCAAAT
GTTTTTATTATGATTATGGCAGAATTTACGAGCTGTAGTTAATTATGGTG
AAATCAATTTTGAGCTGGGATGAATGGTAGGAAATGTTTTGAACTGGAAT
ATAATGGTGgaatgtttttgaaatagaaTCGATGGTGTTTTGTACTGAAA
TTCTATATTGCATTTTTTCTAAACCCAGTTTAGGGAGTGggtgaaaaaga
caaaaaggagGCAGGGTATAAAGCctggggggtacttaggcaaaaatggg
tgctgggtatgtgcaggTATGTGTGTATGGGtcgtttttttcacctttca
aagtctcactaagggttacaaaaatcagaaaatttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040024XLOC_040024Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063834-exon-scaffold_403-1491911889:9206..9641TCONS_00063834-exon-scaffold_403-1491911889:9206..9641Clytia hemisphaericaexon
TCONS_00063834-exon-scaffold_403-1510915933:9206..9641TCONS_00063834-exon-scaffold_403-1510915933:9206..9641Clytia hemisphaericaexon
TCONS_00063834-exon-scaffold_403-1575043694:9206..9641TCONS_00063834-exon-scaffold_403-1575043694:9206..9641Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_403supercontigscaffold_403:9206..9641 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.152407	0.176959	0.173127	0	0.16655	0.203911	0	0	0	0	0	0.103943	0	0.0887464	0	0	0.120255	0.664557	0.362642	0	0.450349	0	0	0.167801	0.299517	0	0	0	0.176738
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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