TCONS_00063843 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063843
Unique NameTCONS_00063843
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063843 ID=TCONS_00063843|Name=TCONS_00063843|organism=Clytia hemisphaerica|type=transcript|length=863bp
AGGATTTTAAGGATTAAAATCTCGCATCACTGTgtaaaaaaacaggaaaa
actaaagaataaattccatttcaatttttcagtccaaaaacctcattttt
aggCACCTTTGACCCGaatttgccaatttttttgccattttaggtactgc
cattttgcatcaataATTTGGCCTTGTTTGGTTTACCATCGTCGGGGGTG
ATATCGAAAATGAGCGGTCGATATCTATAAAGTGCTCCAGACGGACTTGC
GTAATATATAGCCTATGGTAGTCAAGTCCACTCAAACCTTCTCGTGGTGG
GGCTGTTTAAACCGATAGGAGTGGGCGAAAGGCGAGTCAACTGGCGCCAT
AACCAGTGCTCCGGGCAGGATAAGCTCGGAGAAGGAAAATCTCTGATTTC
AAAACCCGGGCAGGATGAGCTCGTTAGCGTTGCCAGCAGCTATCCTAGGA
GAAGGAAAATCTCTGATTTCAAAACCAAACAACTTCTATTTCTTGGGGGT
AGTCGTAGTGTCAAAGGCAGGTGTCAACATATCGACTCTCTGGCTTTGTT
CACATTGCAGCTCTTTTGGTGCACTGCTCTGAGACAGAGCACTCCAAGGC
AACGACAGATCCGGCCAATCATCGTTGCATCTCATCGGCTACAAGAAAAC
ATGATAATGTCTCAAAACAGCACCAGGGTTGAAGCCCCTGAATTATCTCG
TTCTATACTCATGTCTGATCGTGTCCAAAGGACTCGTAATGAAGTTGATA
TCCAAAACCCCTTTGGGAGGGTAAAGACTGATGTCAGAAAGAGAAAAGGA
CTCTTAAAACAAACCTCTTATGTGTTTATTGGTCAGCTCCCGCCGCACCC
TCAACTCTTTGTC
Run BLAST on NCBI

transcript from alignment at scaffold_403:88418..89280

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063843 ID=TCONS_00063843|Name=TCONS_00063843|organism=Clytia hemisphaerica|type=transcript|length=863bp|location=Sequence derived from alignment at scaffold_403:88418..89280 (Clytia hemisphaerica)
GACAAAGAGTTGAGGGTGCGGCGGGAGCTGACCAATAAACACATAAGAGG
TTTGTTTTAAGAGTCCTTTTCTCTTTCTGACATCAGTCTTTACCCTCCCA
AAGGGGTTTTGGATATCAACTTCATTACGAGTCCTTTGGACACGATCAGA
CATGAGTATAGAACGAGATAATTCAGGGGCTTCAACCCTGGTGCTGTTTT
GAGACATTATCATGTTTTCTTGTAGCCGATGAGATGCAACGATGATTGGC
CGGATCTGTCGTTGCCTTGGAGTGCTCTGTCTCAGAGCAGTGCACCAAAA
GAGCTGCAATGTGAACAAAGCCAGAGAGTCGATATGTTGACACCTGCCTT
TGACACTACGACTACCCCCAAGAAATAGAAGTTGTTTGGTTTTGAAATCA
GAGATTTTCCTTCTCCTAGGATAGCTGCTGGCAACGCTAACGAGCTCATC
CTGCCCGGGTTTTGAAATCAGAGATTTTCCTTCTCCGAGCTTATCCTGCC
CGGAGCACTGGTTATGGCGCCAGTTGACTCGCCTTTCGCCCACTCCTATC
GGTTTAAACAGCCCCACCACGAGAAGGTTTGAGTGGACTTGACTACCATA
GGCTATATATTACGCAAGTCCGTCTGGAGCACTTTATAGATATCGACCGC
TCATTTTCGATATCACCCCCGACGATGGTAAACCAAACAAGGCCAAATta
ttgatgcaaaatggcagtacctaaaatggcaaaaaaattggcaaattCGG
GTCAAAGGTGcctaaaaatgaggtttttggactgaaaaattgaaatggaa
tttattctttagtttttcctgtttttttacACAGTGATGCGAGATTTTAA
TCCTTAAAATCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040033XLOC_040033Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063843-exon-scaffold_403-1491911889:88418..89280TCONS_00063843-exon-scaffold_403-1491911889:88418..89280Clytia hemisphaericaexon
TCONS_00063843-exon-scaffold_403-1510915933:88418..89280TCONS_00063843-exon-scaffold_403-1510915933:88418..89280Clytia hemisphaericaexon
TCONS_00063843-exon-scaffold_403-1575043694:88418..89280TCONS_00063843-exon-scaffold_403-1575043694:88418..89280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_403supercontigscaffold_403:88418..89280 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.542473	0.317398	0.675637	1.3821	0.951022	1.15617	0.697435	0.65293	0.365705	0.452985	0.494638	0.939339	0.180391	0.374675	0.369641	0.495852	0.285063	0.25044	0.749659	0.301717	0.262247	0.153498	0	0.282739	1.10662	0.727726	0.223151	0.0793844	0.301051	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063843 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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