TCONS_00063920 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063920
Unique NameTCONS_00063920
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2855

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063920 ID=TCONS_00063920|Name=TCONS_00063920|organism=Clytia hemisphaerica|type=transcript|length=2855bp
GTTAATTTAAAACcgcatcttttttatttcattttcttcagTGAGGTTGT
TTCTCAAATGTTTTGAGAACATTGAAGAAAAAGTTAATTGTATATTGTAT
TAAGAAAATTATATAAGCGATGGATTTCGAAAGTGGAAACATCGCTTCAA
AATATTGTAATAACGAAATGGTGATTACAATGGAATTAAGTCAGCTTCGG
CATGAAAACAAGGAACTTTACATGGCCCGAAAATTCTACGAGTATCAATA
CGAAGAATGTCGCCAAGATAAAGAGTCCTTAATCAACGAGCTGACGTTAT
TGGAGAATGTATTACAACAAACATTAACGAAGAGCGAAGAACAGCACACT
CGCTTGGTTGAAAGATACGAGAGTCAATTCGAACGTTTACGATTCGAATG
TCAACACGAACGTAACAAATACAAACCTCTCGAAAATCGCATCCAAGATT
TGAAGCAACGCGAAAAACAACTACTAGAGCAGTTAGCTTGCAAAGAAACT
TTGGTTGAgcaaaaacaacaatttttaaaCGACTCACACGACAAAGTTGG
ACAGTTGGAATCTGAGCTTACTGATGTCAAGAAGAAATTAGCTGATCAGA
AGACGCAGAATATTTGGCTAAGTGAAAAAGTTGATTCCACGttcaaacaa
aaagaagaatCTGACAGTCTTTTCCAAGGTCAACTCGAAGATCTGAGATT
GGTTTTGGTTGAAAAGGAGCTTGAGTGTCATACGAAAGGGGAAAGAGTTG
GCGAGTTGCGAACACTTTTGGAAGATGAATGCAAGAAAAGTCGATTCTTA
TATGACAGCGTGAAAAAGGTCGATGAGGTGACAAACTATCACAAAACTTT
ACTCCAGAAATATGAGGATGTAAAACGAAGAGAGCTTACAGCCTCTAGAA
AGTTGAAGGAAAGTCAACGCGAAAAAAAGAAGCTTACAAGACGAGTGAAG
GAACAAAAACAAGAGAGTTTAGGAAGATCTTCCGAAAGTGAAGATGAAat
caattctttgaaaaaagaaagcCAAAGATTGAAGAAGAAACTCAAGGAAA
GGCAAGACTCTCACTTAAAGGCctcttctgattggtcaaaagaaaagcaA
GGTTTGGAATCAAGAATGGATGCTCTTGAAGAGGATAACCAACAACTAAA
AAGTGAGAAATCCTCAATTTCATCAGAAATTACTTTattgaaagaaagtt
tgaagaaaattgaagacGAGAAGCGATCaggagaaatcgaaagtgaacaG
AAGTTGAAAGAGTTACACAATGAGGTAGACAGGCTGAGGAAAGAGGCAAA
TGAGAAACAGCTTCATTTTGAAGCTAAAACAACCATCTTGGTAAGTCACC
AACAAACTGACAATGCTAAAACTGTTTCTGACACCTACGAAGATGATTTT
GAACCGTCATCCGATGAAGATGAATCTATCATTCAGGAAAAATCAGTCGT
TGATGAAATGAGCCAGAAAGAAAAAGTAGTCGAACTACCAGAAGATACTA
CCAGAGATATATGTTCACTGAAAGAAGAACTGGCACCATGCAATCAAGAT
ATTGTTCGAAATATCACCAGTGTACAAGAAGAGGTTCCATCTTTGAAGGG
AGAGAAACATCAGGAAACTGAAGAAGCAAATTACGATAACGATACATTTG
AAGATTGTCAAAGCTCTGCATCATCAGTTGCATCTATTCAAGACGAATGC
GCCACTGAAATAGACGATGGCGAGCTTCTTGATGAATCAGTCGCTGACAT
CGAATCTGACGTTGAAGACAGTATCAAATCTGGCGTTTTCTTCGGTGACG
AAGCAAAACCATCAAGAGATTCTAAAATCATTGAGGCTCCTAACCAAACT
TCGAGTGTTGTTGTTCCAGTAGTAGCTGAAATTGAAAAGTGCGTAGGAGT
CAAAGCCGTTGACACTCAAACACACAAGGTTGATAACAATATGGCCTCCG
ATTTGAAAGGTGCTCATTTTGAAGCTTCTCCAGTTGCCAccatcaaaaca
tcaaaatcaaaaccgAAAGTCTTCACAGTAAACGATCTCTTTGGCGCAAA
ATCACAAGCAACCGCTAAACCAAAAGAAACAGCTGACGACAACATCTTTG
CAAGCTCTCctaccaacaaaacaaaacaatctaaAGGGCGTAGAGCTTCA
GCATGCAGAATCTCCTCGGATGACATTTTTGGAACATCTCTTGGCGTTGT
TTCATTGCCCAAAGCAGAGGTTGATACCAAAGCGACCGAAAGGGACGTCT
TCGGAACGCCACAACACTTAACCAAAAAGAAAACCTTGGATACCGCAATT
TTGGAACAGCCATCTTCCCGAAAAACCACTGAAAGGTCACTTACCATCAA
CAAAAAACTAGAAGTCAACAAAGCTGAACGCAATATCTCAGTAGACGATA
TTTTTGGTAAATCAGCTCTTTCCCCTGCCAgctttgatgatgatgatgaa
gacgACCTTGATGCAGACATCGATGCCATCCTCGGATGTCTTTGAGTTAA
AAGCAATATAACTAACATCTAACATTATTTTTACCAGCTTTTATAATGTA
AATAAAATATCACTCACTATCTTGAAATCTAATACTTGTTCTTTCCCACA
CTATGGATGTTTTTGAACCATTTACTGAGAAGATCTTTCCATTTTAAGGC
ATTTATCAGAACTGTTATACCCAATGTTTATCACGATATTAGTTAAACCT
TTTTCAACTATTGAATAATATCGAGATTGACATTTTTTAAGGGGTCTTGA
GTCAATCAGTTTCAAGTATTAAAATGATATTagtttttgaaaagatataG
ATCAGGTTTTCTGGTCTATGTAGTCGAGTACCCTCTTCTTTTGTTCGTTG
ACAGA
Run BLAST on NCBI

transcript from alignment at scaffold_404:65733..69577-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063920 ID=TCONS_00063920|Name=TCONS_00063920|organism=Clytia hemisphaerica|type=transcript|length=3845bp|location=Sequence derived from alignment at scaffold_404:65733..69577- (Clytia hemisphaerica)
GTTAATTTAAAACCGCATCTTTTTTATTTCATTTTCTTCAGTGAGGTTGT
TTCTCAAATGTTTTGAGAACATTGAAGAAAAAGTTAATTGTATATTGTAT
TAAGAAAATTATATAAGCGATGGATTTCGAAAGTGGAAACATCGCTTCAA
AATATTGTAATAACGAAATGGTGATTACAATGGAATTAAGTCAGCTTCGG
CATGAAAACAAGGAACTTTACATGGCCCGAAAATTCTACGAGTATCAATA
CGAAGAATGTCGCCAAGATAAAGAGTCCTTAATCAACGAGCTGACGTTAT
TGGAGAATGTATTACAACAAACATTAACGAAGAGCGAAGAACAGCACACT
CGCTTGGTTGAAAGATACGAGAGTCAATTCGAACGTTTACGATTCGAATG
TCAACACGAACGTAACAAATACAAACCTCTCGAAAATCGCATCCAAGATT
TGAAGCAACGCGAAAAACAACTACTAGAGCAGTTAGCTTGCAAAGAAACT
TTGGTTGAGCAAAAACAACAATTTTTAAACGACTCACACGACAAAGTTGG
ACAGTTGGAATCTGAGCTTACTGATGTCAAGAAGAAATTAGCTGATCAGA
AGACGCAGAATATTTGGCTAAGTGAAAAAGTTGATTCCACGTTCAAACAA
AAAGAAGAATCTGACAGTCTTTTCCAAGGTAAATGCCAGAATAATATTCT
CATTTTAGAATGTGCTTTAACTGAAATAAAATAACTGAAATCGAATATTT
AAAATTATTTGTCTATTAGCTCGAATATTCAAAATTAGTTATCTCATATA
AGATGCATCTTTTTCTTTTTCGGCTATTGTCAGTTTCAACTCACGCCTTA
TAAGTATAATAACGAAATGACAAGGCCCTACTCAAAGAAGATGCCGTGAA
ACCGTGAAACAGTAAAATGATTTTTTAATCATTTTATAGGTCAACTCGAA
GATCTGAGATTGGTTTTGGTTGAAAAGGAGCTTGAGTGTCATACGAAAGG
GGAAAGAGTTGGCGAGTTGCGAACACTTTTGGAAGATGAATGCAAGAAAA
GTCGATTCTTATATGACAGCGTGAAAAAGGTCGATGAGGTGACAAACTAT
CACAAAACTTTACTCCAGAAATATGAGGATGTAAAACGAAGAGAGCTTAC
AGCCTCTAGAAAGTTGAAGGAAAGTCAACGCGAAAAAAAGAAGCTTACAA
GACGAGTGAAGGAACAAAAACAAGAGAGTTTAGGAAGATCTTCCGAAAGT
GAAGATGAAATCAATTCTTTGAAAAAAGAAAGCCAAAGATTGAAGAAGAA
ACTCAAGGAAAGGCAAGACTCTCACTTAAAGGCCTCTTCTGATTGGTCAA
AAGAAAAGCAAGGTNCCACGTTCAAACAAAAAGAAGAATCTGACAGTCTT
TTCCAAGGTAAATGCCAGAATAATATTCTCATTTTAGAATGTGCTTTAAC
TGAAATAGAATAACTGAAATCGAATATTTAAAATTATTTGTCTATTAGCT
CGAATATTCAAAATTAGTTATCTCATATAAGATGCATCTTTTTCTTTTTC
GGCTATTGTCAGTTTCAACTCACGCCTTATAAGTATAATAACGAAATGAC
AAGGCCCTACTCAAAGAAGATGCCGTGAAACCGTGAAACAGTAAAATGAT
TTTTTAATCATTTTATAGGTCAACTCGAAGATCTGAGATTGGTTTTGGTT
GAAAAGGAGCTTGAGTGTCATACGAAAGGGGAAAGAGTTGGCGAGTTGCG
AACACTTTTGGAAGATGAATGCAAGAAAAGTCGATTCTTATATGACAGCG
TGAAAAAGGTCGATGAGGTGACAAACTATCACAAAACTTTACTCCAGAAA
TATGAGGATGTAAAACGAAGAGAGCTTACAGCCTCTAGAAAGTTGAAGGA
AAGTCAACGCGAAAAAAAGAAGCTTACAAGACGAGTGAAGGAACAAAAAC
AAGAGAGTTTAGGAAGATCTTCCGAAAGTGAAGATGAAATCAATTCTTTG
AAAAAAGAAAGCCAAAGATTGAAGAAGAAACTCAAGGAAAGGCAAGACTC
TCACTTAAAGGCCTCTTCTGATTGGTCAAAAGAAAAGCAAGGTTTGGAAT
CAAGAATGGATGCTCTTGAAGAGGATAACCAACAACTAAAAAGTGAGAAA
TCCTCAATTTCATCAGAAATTACTTTATTGAAAGAAAGTTTGAAGAAAAT
TGAAGACGAGAAGCGATCAGGAGAAATCGAAAGTGAACAGAAGTTGAAAG
AGTTACACAATGAGGTAGACAGGCTGAGGAAAGAGGCAAATGAGAAACAG
CTTCATTTTGAAGCTAAAACAACCATCTTGGTAAGTCACCAACAAACTGA
CAATGCTAAAACTGTTTCTGACACCTACGAAGATGATTTTGAACCGTCAT
CCGATGAAGATGAATCTATCATTCAGGAAAAATCAGTCGTTGATGAAATG
AGCCAGAAAGAAAAAGTAGTCGAACTACCAGAAGATACTACCAGAGATAT
ATGTTCACTGAAAGAAGAACTGGCACCATGCAATCAAGATATTGTTCGAA
ATATCACCAGTGTACAAGAAGAGGTTCCATCTTTGAAGGGAGAGAAACAT
CAGGAAACTGAAGAAGCAAATTACGATAACGATACATTTGAAGATTGTCA
AAGCTCTGCATCATCAGTTGCATCTATTCAAGACGAATGCGCCACTGAAA
TAGACGATGGCGAGCTTCTTGATGAATCAGTCGCTGACATCGAATCTGAC
GTTGAAGACAGTATCAAATCTGGCGTTTTCTTCGGTGACGAAGCAAAACC
ATCAAGAGATTCTAAAATCATTGAGGCTCCTAACCAAACTTCGAGTGTTG
TTGTTCCAGTAGTAGCTGAAATTGAAAAGTGCGTAGGAGTCAAAGCCGTT
GACACTCAAACACACAAGGTTGATAACAATATGGCCTCCGATTTGAAAGG
TGCTCATTTTGAAGCTTCTCCAGTTGCCACCATCAAAACATCAAAATCAA
AACCGAAAGTCTTCACAGTAAACGATCTCTTTGGCGCAAAATCACAAGCA
ACCGCTAAACCAAAAGAAACAGCTGACGACAACATCTTTGCAAGCTCTCC
TACCAACAAAACAAAACAATCTAAAGGGCGTAGAGCTTCAGCATGCAGAA
TCTCCTCGGATGACATTTTTGGAACATCTCTTGGCGTTGTTTCATTGCCC
AAAGCAGAGGTTGATACCAAAGCGACCGAAAGGGACGTCTTCGGAACGCC
ACAACACTTAACCAAAAAGAAAACCTTGGATACCGCAATTTTGGAACAGC
CATCTTCCCGAAAAACCACTGAAAGGTCACTTACCATCAACAAAAAACTA
GAAGTCAACAAAGCTGAACGCAATATCTCAGTAGACGATATTTTTGGTAA
ATCAGCTCTTTCCCCTGCCAGCTTTGATGATGATGATGAAGACGACCTTG
ATGCAGACATCGATGCCATCCTCGGATGTCTTTGAGTTAAAAGCAATATA
ACTAACATCTAACATTATTTTTACCAGCTTTTATAATGTAAATAAAATAT
CACTCACTATCTTGAAATCTAATACTTGTTCTTTCCCACACTATGGATGT
TTTTGAACCATTTACTGAGAAGATCTTTCCATTTTAAGGCATTTATCAGA
ACTGTTATACCCAATGTTTATCACGATATTAGTTAAACCTTTTTCAACTA
TTGAATAATATCGAGATTGACATTTTTTAAGGGGTCTTGAGTCAATCAGT
TTCAAGTATTAAAATGATATTAGTTTTTGAAAAGATATAGATCAGGTTTT
CTGGTCTATGTAGTCGAGTACCCTCTTCTTTTGTTCGTTGACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040063XLOC_040063Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063920-exon-scaffold_404-1575043694:68900..69577TCONS_00063920-exon-scaffold_404-1575043694:68900..69577Clytia hemisphaericaexon
TCONS_00063920-exon-scaffold_404-1575043694:65733..67909TCONS_00063920-exon-scaffold_404-1575043694:65733..67909Clytia hemisphaericaexon
TCONS_00063920-exon-scaffold_404-1510915933:68900..69577TCONS_00063920-exon-scaffold_404-1510915933:68900..69577Clytia hemisphaericaexon
TCONS_00063920-exon-scaffold_404-1510915933:65733..67909TCONS_00063920-exon-scaffold_404-1510915933:65733..67909Clytia hemisphaericaexon
TCONS_00063920-exon-scaffold_404-1491911889:68900..69577TCONS_00063920-exon-scaffold_404-1491911889:68900..69577Clytia hemisphaericaexon
TCONS_00063920-exon-scaffold_404-1491911889:65733..67909TCONS_00063920-exon-scaffold_404-1491911889:65733..67909Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:65733..69577 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.308583	0.1569	0.729154	0.935709	0.361999	0.314746	0.172532	0.322885	0.146883	0.168088	0.081505	0.419696	0.0980901	0.0648507	0.274136	0.17158	0.312418	0.288867	0.213951	0.149148	0.0518731	0.227636	0.046135	0.139767	0.10077	0.179869	0.128696	0.0784844	0.0892914	0.106136
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top