TCONS_00063873 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063873
Unique NameTCONS_00063873
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1938

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063873 ID=TCONS_00063873|Name=TCONS_00063873|organism=Clytia hemisphaerica|type=transcript|length=1938bp
TACCTTATCTGGTGCTTGTATTGAAACAAAAGCCTTGGATGAGCTTTTTT
CTGACTGGAAAGAACGTGATGCTCCACTTCATACTGAAGTTACTGGTGAT
AAAATGTATTATTTGACGGAAAGCAAAGGGATCAATATTCCAGTTTTTAA
AGGTTTGCCAATGTACAACCATGGCAATTATTTAGTACGTCTTGGAAATT
TTGTTCAATGGCTTGGTGAACAAGCTGAACAAATGGATGTTGAAATTTAC
CCTGGTATCGCTGCTAGTGAgGTTTTGTACCATGAAGACGGAAGTGTCAA
AGGGATTGCAACTGCAGATGTTGGTATTGCTAGAGATGGTTCACCTAAGG
ATACTTTTGAAAGAGGTATGGAACTTCACGCCAAGGTCACCGTATTTGCA
GAAGGATGTCATGGTCATTTGGCGAAACAAATCTTCAACAAGTTCAATTT
ACGTGAGAATTCTTGCCAACAAACCTATGGCATAGGTATAAAAGAGTTAT
GGGAAATCGACCCTGATAAACATCAACCTGGGTTGGTTATTCACACAGCT
GGTTGGCCTCTGcctAGTGATACTTACGGTGGCTCGTTCTTATATCATTT
GGATGAAGGCCCTCTTGTCTCGGCCGGTTTTGTAGTTGGTTTGGATTACA
AGAACCCCTATTTGAGTCCTTTCCAAGAGTTCCAGAGATGGAAAACACAT
CCAAGTATTCGGGAAACATTTGAAGGTGGCACCAGAATCGCTTATGGCGC
CAGAGCTTTGAATGAAGGAGGCTACCAGTCATTACCGAAGCTAACGTTCC
CCGGAGGATGTGTGATCGGATGCTCAGCTGGATTCATGAACGTGCCAAAG
ATCAAAGGAACACACGGTGCCATGAAGAGTGGTCTGTTAGCCGCTGAATC
AATCTTCGAAGCGTTGTCTGACGAAGTCAACCAAGAGAAAGAATCTGGAA
TTGAACCAAGCACTTACGGACAGCGATTCAAAGATAGTTGGCTACACAAA
GAATTGTATTCTGCAAGAAACATTCGCCCGTCTTTCGAAACACCGTTACA
TTTGTGGGGAACCATGCTCTATACTGGCCTCTTTTATTGGCTCGGTGGTG
GTCGTGAGCCATGGACCTTCAAACACGACGGAATCGATGCTGAGAAACTG
AAACCAGCGGCAGAATGCACCCCTATTGAGTACCCTAAACCTGATGGCAA
GATCACTTTTGATCTACTCTCATCTGTCGCACTAAGCGGCACGAATCATG
ATCACGACCAACCTGCTCatttgactttgaaaaatgatgacgttCCTGTT
GAACGAAACTTAGGAGTTTTTGATGGGCCTGAAGCACGTTTTTGTCCAGC
GGGTGTTTACGAGTACATCGACGATGAAGCAACGGGTGGACGTAAATTAC
AGATCAACGCTCAAAATTGTGTTCATTGTAAGACATGTGATATTAAATGT
CCAAGTCAAAATATCAATTGGGTTGTCCCTGAAAGTGGTGGTGGTCCTGC
TTACAGCGGAATgtaaaaaatacagaaaaacattttttataacaaGACGG
ctataaaaaaatgaaacttccaATTCTATGAAAAAGTGGAAGAAGTGATA
TTGACAAAAAACCaagggaaaattattttttatccagtaaaaatataaaa
aaatttaacgaaaaaatTTACGGCACTTGTACATAATAACATTACATTct
actttgtttttttgtttgttttattttaccattccaaaatatcttttttt
aacaGAATTTGAATTTAGAACATGCTTTGTGAGCTAATGATTTGATCCAT
AAGTGTATAatataatttgatattttctatAATTCTTTGGTTTTCTCTTC
CTATTCAAGAtggaaaaagccaaaaaatgtgattttgaattttgcaCAAA
AGTGCAACAAATATCCTTGTATTTGAAATTTTCGGGAA
Run BLAST on NCBI

transcript from alignment at scaffold_404:230447..246533+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063873 ID=TCONS_00063873|Name=TCONS_00063873|organism=Clytia hemisphaerica|type=transcript|length=16087bp|location=Sequence derived from alignment at scaffold_404:230447..246533+ (Clytia hemisphaerica)
TACCTTATCTGGTGCTTGTATTGAAACAAAAGCCTTGGATGAGCTTTTTT
CTGACTGGAAAGAACGTGATGTAAGTCTGCAAATAATGTTTCAACAAAAT
TGAATCCATTATtagaaactttgttttgatgagCTCGATTTCGTTATACT
TGTCTTTATCAAGCATTCAAATTACTTTATTGTTTCTTTTTCAGGCTCCA
CTTCATACTGAAGTTACTGGTGATAAAATGTATTATTTGACGGAAAGCAA
AGGGATCAATATTCCAGTTTTTAAAGGTAACCTGCCATATTGTTATTTGC
TTTAGATTTGGTTTGATTGTTTAGAGAAGTACTTAGCCTTGTATTTTAAG
TGATAAAACAACataaaattttctcaaagttCACCTGGACTTTTTTGAGA
TTGTTGagaaaactttcattttcttgaaatataactttatcTGTTTCTTT
AGGTTTGCCAATGTACAACCATGGCAATTATTTAGTACGTCTTGGAAATT
TTGTTCAATGGCTTGGTGAACAAGCTGAACAAATGGATGTTGAAATTTAC
CCTGGTATCGCTGCTAGTGAggtattttttaatcaaaaagaaGTTCTAtc
taaaccttttttttatcaatcaaacttggGTGTTTATAATCTTCCTGTTC
TAGATTTTTAATTCTCATCACAGACAAATTCTTTTCACTGTTTATTTTTA
AACCTATCTTTTGTAAAAAAggataatttctttttaaaaatcttcttctC
AAATATCATTGGCATCGAAAGCATTTACTAATGGGCTAAtttgatttgaa
tattttttgtgaaaatgaaaaagaggaGTGGAATTGATTTTTAATATGAT
CAGCCATTAtctttccattatttttatcgTTGTTGTTATAGGTTTTGTAC
CATGAAGACGGAAGTGTCAAAGGGATTGCAACTGCAGATGTTGGTATTGC
TAGAGATGGTTCACCTAAGGTATGCCAAACTAATCCCTATATCTAAAATC
AATGTCCTCCAGATTTTACGGAAATGAGTCTTTTGTGATTCAAGTCAGCC
GAGGACGACTCAAAGCTAGGAGTCCCTTTTTGCCTTTTGATAATTGTCTA
TCAAAAAGGGGAGGGAATGCCACTTTTTTCCCTTGATTTCTCCACCTACC
TTTGATCAATCTTTTTAATTGCCAGGCATTAAGTATAAGGGCATCCTTGG
TAAGACATAGCTGCTGCATGGAGTTTGACCTCCAACTTCCCTTGGCATAC
GCCGTTCACAAGTTTACAAGTATATAAACAATTTTGCAGTATGAAATCTA
TGATTTCCTTTCCAGGATACTTTTGAAAGAGGTATGGAACTTCACGCCAA
GGTCACCGTATTTGCAGAAGGATGTCATGGTCATTTGGCGAAACAAATCT
TCAACAAGTTCAATTTACGTGAGAATTCTTGCCAACAAACCTATGGCATA
GGTATAAAAGAGGTGAGAAATCCTATCGGAATTCTGTCAGATAAATTACG
ATTGGTGCCACTTTCTCTAAGCGTCTATTCAATTATTGGATATAAGAGAG
TTTTGAACTTCAAGTGGGATACTGATAGCCTTTGAGTGTTTGATTACGAG
ACTTTCTTTACTACATTCTTCATTTCATGATTCCTCGCTCTGTGtgattt
tattgaaatgaaTGCAATTTAATGGAATCGCTTTAACTTTCAAACTAGTC
ACATGCGGTTTGGTTCCTGTATCTAGTTTTTAGTAGCAATAtcagaataa
ataaaaataaaaatatcaatcaaatgaggtgaaatcatattcaaagagtG
GATTAGAGCTTCTTTAGTTCTGTAGTTCTGTAGTTTCCATAACGTACTTT
GAAAGTTCAGTTGAATTCTCTTTTTCCTCGTCATACCTAAAAGTATGTTT
ATGTTGGTTCCATCTCGTTTTGAAGGTATTTTCGGTAAGGCCGATGTATT
TAACACCCTCGTCGTCCTCCCCAGACGCAAAAACATTTCACCCCTGTTAT
CCTTGAAAGTCATCGATCACGCAAAACCCTATTCAAATGGGGGCAAATCG
TGCAACCTTTGTATGACCGAAAAGTACCACATAATTACTTCCAAAGACAA
ACTTATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGTCATATGagcaaattctttttaaaaaactttaaagacgT
CCCTCCGGACACATTTGATGTCCTTCGTGACAATTCATAGTTTTAcgatt
ttatcactttttaccaattttgtaacatatgttttcacacagctttttaa
ttttttagttacATCTGATAATTGCTTAGAGCATGAAACTCCGAGTTatg
gatttttaaaattttttggttttgaaatatatttttgattaaaaataaaa
atatgaatgAGTTTTGACCATGCCCCTATGTCAGAGCTTTTTAGATCATT
GCTAAAGCcctactttttttctttttggggtCATGATTTACGATTCAATT
TAATTAATAAAGTCTTTACATTTTATAATTTAATATCTTTACATTTCAGT
TATGGGAAATCGACCCTGATAAACATCAACCTGGGTTGGTTATTCACACA
GCTGGTTGGCCTCTGGTACGTATACTTATCGTAATTCTTTTAAACCCTGA
AAACATTCTCTAACAATAATATTGTATAGTATATGTAGCCCTATGCGTAc
gttgaaattgttttttttttttttactaaaattcaaaaagataaATTAGA
TAAAACAGTCTCGAATATTTTGGCAAAAAGACGTCAAGGTTATCTCAAGA
CCGTTAGCGTCAGAAGACCACAAACAGGCCAATAATTTTAAGCCATCCTA
CTGTGCATTTAATCGGCTTTCCTAAacgattataaaaaaatgaggggAAA
GTAAGGTCACACTTCTATATAATACTTATTTGTGCTTTCGGTAGATCTAG
TAGAAGACGGAAAATTATTCAAAGAGTCTAAAATTAGTTGGTTTCACAGC
TACCTTAATTTCAAGGCTTAAACAACACATCAATTTTATGACACGTGGGT
AAAACAGACATTATTTTCAAGGGCTTTTTCGAgtatatttcttttcattt
tcagcctAGTGATACTTACGGTGGCTCGTTCTTATATCATTTGGATGAAG
GCCCTCTTGTCTCGGCCGGTTTTGTAGTAAGTTATTTCACTATTCTCAAG
TTTTCAGGACATGAACTATTGAAATACTACCATTATTCTTTCTTATGCAC
GTACCTCATCAAAAACAAATAACGGGAGAAGTTATGTTATTTCTTGGTGA
GCTCgactttgatgattttcgaaaaaagaaaccttttaaaagttttagcG
TAGTAGGGGGCCAACCTTTATTATCGGTAACATCTTTCGTGATACTCTGC
ATGTGAAAGTAGAAatgattttgaaacttttttgagagggagcctgcaaa
aaatggcaaaagtttttatggcaAAAAAACTGATGTTGTGAGCAAAATTC
CTAACCCCCAAAATAGGCAAAAAAGTGACTCTTTTTTGGAAttccttttc
attttaaagGGCCAAGCTAAAACTTTGACGTatagtgtttttaaattggG
TTCATTTGTTCAAAAGTTTTAaggttttaaagtttaaaaaatatgtcaaa
aagtcGCATCAAGTTGAACGCAAATTTACATAAAATAACTCGCGCTCACT
ATTTTATTGACTGTAACAACCCAATTAACGATCCAAGTTGATCTATATCG
ATTTGCAAAATGAAGACAAAAAATAGCAAACGTTGAATCTGACTTAAAAA
AACCTATAAACACTGAACCATAAGCTatgtataaaaatttttcaCCCAGT
AAATAGACAGAGCATGTATACGAGGTGTATCGTAATCTAGTGTTATGTCA
AATGTCCTTGATATGATGCAAGTAATGGCTATCCGACCAAAAAAAAGGTT
GGTATGTTGTATAAAAGATGTGAACGTGACTCCGAAAACTAGGCTCGATC
ATAATTTTGAATTAAGCTTCCACGTGCCCATCTCATAAGATTTCTAAAac
cttcaaagaagtactttgACATTgcgtcttttttatttcaattgaagccg
tatatatataaaagttgcgaagcgatccatagcctcctcgattcgcaagt
tgcaagcaaaaaatTTAAGACATACAAACACTGTATATTCAATGGCATTT
GTGAAGTTTTACTTAATACATTCGCTGCAGTCTTTCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGACAGCTT
TCCACATTTAAAACACAATTATATACCGTGAGatggggtaacttgcatca
gtggaggctaacatgcatagccctaaaataaatgacctgactggtcatta
aaacacaaagttaaatcaaaacaaatttgtaagGTATGCGAAttcaaaaa
ggagaaaagagactgttttaatctaacgtttccagtccatctaaaaagaa
cgacaaatatctattaaaaagcaacaaaaaaagaacaacaaacccTAACT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGATAATTGTTTTACTTTTCGTAGCTAT
TGTGCGAGATGGACAATTTGCAGAATCATACAAGTCTTGAAGCAACTGTC
CATGTGGGTCATTAACTAATCttcaaacttcattttttattgaatgATGG
TTAAAACGATTAGGAAACTCAATATGAANTAACTACatatggtttaaaag
aacgcaaaattatgcatgcgaataagtctctatttgggtgagctggaaag
atTAGATAAACTAACTCATAAACaacaaaggtttttcaaagtttttatag
tTGACGACAAAAGGCATGTCAAAGAAGGTTCAAAAGTTCACGgcaaaagt
aaagaaaattttcaagtatGTTGACAATNTCTCTGAAGCATTATAACATG
TTTGACATAATATACACTCTAACAAGCTAGATATGGTAAAAACAGATTCT
TCTGGTGCAGAACTTAGATTTCAATCATAAATTTGGTACAGCAAATATAT
AAGACATTTTTGAGCATCAAACTGTTGAAAGTGACTGTGATCATAATCCG
TCTCAAGACAAAAAGAAGGAATCAAATGGTATGTTTCAATCGGTGCATTT
GACATAGCGATAAACAATTCTCTAATCATTAACTTTCCTGAGTTACCACA
GTTAAtgtcaaaattataaacaaagtcACGAAAACTTTCGACAGAATATA
ATGCTTGAataacagaattaaaaaaagcagacattttggcccaaattttt
ttgcccCTAGTGGAAAAAGTCTTGATTGTCCTGACATTTTGACGAACACA
ATGAGAGAAATATAGAATTAGTGGATATTTAGGACTGTTCTGTTTTGGTc
ggacgtcaaattttttatttaaaaagtgtcGGTGTTGATATTTCTTAATC
AGATCAGACAGACAGGATGCTGGGAAATTTAACTCTTGTGTCaagaaaaa
tttctctcaagtgaaaagaaaactatGACTGTAAAAGGTGCAGTGCAATT
TCCTTCCCACTGCTAAAAGTGaggaaaaagtcaacaaatataTACTTCCC
TGTTGGTGCACAAAGTTATGTGTTGTGTTTTGTTGAATCCAAAATGNNAT
CTACATTTAACagatgggaactaaattttcattttccttctgcgctcccc
tggtatatagagtttaaaggtacgcacacactatagcaaaactgcttcgc
tcatacaATTGAAAACTACatctccttctcacagacaggattttttcagc
catcgGGGATAAAAATGAAGGACTGCaatcgatggggattgatatttcca
tattttttctgGCTTGGGATTTACATTATTTTGTCttcaaatcagaaaat
tcagtggggatggaaaaaatagcatgaTAATTTGCAATGAGGATTgcttt
atttgatttgattattttcgCTGGAGACAAAAATTTGAGTATGAATCTCc
accgggacgatattttggccaatttttccagtagggATCCCAGTGGGtcc
gtgagaagggggtgtaaaacTCGTTTCAACGTAGCCTACAAAaggttttt
cttatttttcagagTTTCAAGTTCAATCAAATGCTACATGCTATTTGTTT
CCAATATACACACTGTTTTTGTTTcggtgaaaattttttaaattaacctt
tgtctgtTATTTCGTACCCAGCCTttttcgagattggctcattagttgtt
ttctgatttttgggaCAAAGATGGCAATTCCCAAAACGGACGAAGccgga
ttttcgaaaatatgaaggaaaaaccggtttttcgttattatttttttcga
gatttcatcattagtttttcgaaaatctcggaaatatgccggaaatctcc
gtttttgtgcatttccattggattttttcgttattttttcaGCCGCTTAT
TATCTCGATAAAGTAGCATGATTGCCTACTACCTACTCCTAATTCTGTTT
AACTTTTGTTGTTGGAAAGAATCGGTTTCGGAAAACTGAAGCAACCGTTT
ATGTATTTAATTGCCGGGCATTTTTGCTGCCAGCCTAAAAATTTTCGGAC
TTTCTAAAAACTTCCCTTTGTTCAATGACTCGtgattttaacctttttta
gttcacgtattcatgatattcatgatgtaatcttatGTAATCTTTTCGTT
GATTGACACTCCGAATGgccgccattattggtggcaaaacaAATGCGTTC
CCCAATGTTTTCCAAGCAAGGACCCccggaaaaaataagaaaatattaat
aCAGAAGTCCAAATActccaaatcaaagaaaaaactcTTTCATTGAAATC
TTTTAATTATCTGCAATAGATttccaaaagatatttaattctattatatt
acgtcacaagatattaagctttctttttcgtaaacccccggtttcaatac
aaaataggttagcgggacaatttttttgccaccaataatggcggcTAAGT
TGTTAGTCACATCTATTGTTTAGGcgcaaagattacatcatgaatatcat
gaattgatagAAACCCGTACCCACTCTAGATTTATGCTGTAACATTCTGA
TTAAAGATGTTTTGGTTTGCCTACATAATTCAAGCCTTTTACTGCGCACG
CGTTTGAGATGGTACTGTACACGCGTTTTTGTGGCTGGCTTTTGTGTAAC
AAATGAGAGACTTTCAGTTAGCGATGATATTTGAAATTGCATTAAATTAT
TTATGAGATCCTTATTCATTTgtgaaatttacaaaatttgcatGTGTAGT
CAACAAATGAACCATAATTCCATGTGCGCGTTTCATTGTTACTCACACAT
GCGTCACGTAACCTTACAAGTGGAGCGTTTTAATTTAATTCGTTTATCTT
TTTCATCCGGTATACAGTAATATCATATTCTGAGTTTTTTTAGATTGCTG
AATCGCATGGAAAATGAGAACCTAcagtaccgagtttatgtatttgcact
tttgaggacggtagagtgactgaagcgatttggaaaaacccgcaattccg
ccccgcaaaatcgaggacggtaaaagtgctgatttaccgtcgtcctcagc
tggtcaggatctactcaaattagaaccttaccttctccgtcgctgaaaaa
cacacatacataaactcgctagtgTTCCTCAGTATGCAACAGTATAGGCT
GTGTGTTTTATAGAGTACTTCTAAGTCATTGTGGGCTGcggcatacacgt
tttttttttaagaaactagttttaccaatcAGCCTCaatatttcttaaga
aatcggtcttttgagccttaaatgtttcttacatgtttctaaactttttg
aaaaaatcagcctcatgtttcttaagttttgcttctttaaaaaaacgaat
taaaaaatgtttttttctcattctcagcctcggcatgtttcttagatgtt
tcttagtttttaggcNatgtttttttctcattctcagcctcagcattttt
cttagatgtttcttagtttttaggcattctgagcctcgtgtttcttaaaa
gtgtgtttcttaaagtCTATTTATCTTGACAGATTTATAGCAAATCATGT
TCCGCTGTTCAAAATTCAGTTGCTAGGCAtcagttttctaaaaaaagaaa
tgtaTGACAATTCCCTGAATTTAACTCGATACTATAGAGTTTAACAAATG
TATTTTAACAATGTTATTCTATTATCACGTTTATAAAtaaaacgtttttt
atataacATTTCATGTTCTATTAGAGTAATATGACGCAATAGCGTCTTTA
GCCTAGCAAGCTAGGTGACTAATTCAATAGtagaaagaaaacaaatttta
gtcaatcaaaatcccgtaacaataatcgtattatcatttAACGCCTacac
tactgtattacacgcattataaacgactccagtctaaataACGCGTAACG
ATGCAGTGCAGTAGGAAgtattttcatattgggggggggctgaagtttaa
tGACACAGCGAGGGCCAACCATTGTTTGACccgaggggggggggattttg
aaaatttgagctctagattgcttaagaatacactcaaaacatgcacataa
aagacaattatgacaaattaaaaaagaaaaactttgcattttgcaNctag
attgcttaaaaatacactcaaaacatgcacataaaagacaattatgacaa
attaaaaaagaaaaactttgcattttgcaaaataaccatttttgaaaaaa
ttggggggcttagccccccccccagttgctacggcactgcgaTGACATTG
TAATGAATCGATAAGTTATATTGAATTTGGTATTCTCTTTCTTAAATGTG
TCGTTCCCTTTAATTTACACACAGGTGGTGGACGAActttttcaagccaa
aaaaaatcattgtagATTTGTAGATACCCCCTGGAGaatggaaaaataga
aaaatctctTTGGAAAATTCTTCTCATACCTTATGTAAAGTGAGTTTGGg
taaaccaaaatcagtttctaCCCTTTGTAAGTTTTATGATTACTTTTTAC
CatctggaaaaatgaaaaaataatttccttaGACACCCTGGAAATTCCTC
TACAATCATGTACAAaacatttgagacaaaggggatttctctgtgaaatt
ttaaacaccgcAAATAActtttaagcgcgttaaactaaAGTTTTAACTCT
AAGTACGTCTttgaaactctgagttttaacatgagacttaagacttggga
ccttaggatctcaggatgtAAAAGCTGAAATTTGGATTTAAAATGTGGAA
TGCCCCAATCTTCATCCTATGACTCGATTATGTTCTtagattttcgcgaa
aatttatccctttatgtttttataaaattgttcttataaagcaagCGTGA
GTGCCGATGCCGGACTAATGAGTGTTATAAAAATCATCATGTAATGAAAT
GTTCTCCGGGAGAATACCTACCCATATAAAGGTATTGGGTCAGAGATAAA
TTTCAAGGATTCAGTCTATGAAGGGTTACATAGATACAGAGCCAAAGTTG
TCTCTCCAAGGGCTTAGTTGGAAATATGAAAGTTCGTGAGCATTTCTTGA
TAAGTATTAGATCCAAGCTGCACATTTGCTCCTGTTAGTAAAAGTTTTCA
GATGTAGCTTTCATGTTATTCAAATCTCCTGTAGTGATCAATATTTAGTG
ATGGATAGAAAATAAAAGGAACTAATAGCTGTTCTCAGCGAATTCTTATT
CGCGTGCGCTGAAATCTATGAACAACACGCAACGTATCTTTTGTATACAA
TTTAAACAACCCACTGTGCTCTTGTATTGCCATTTTGCTCACGTTCCGCC
AAGGGAATCTCAAGATAACTGGTCCTCTCTTCGGGCTCTGTATATACGCA
ATATAATCAAAAGGGAGCTTTCAGAATATAGAGTTCAGATCTGTTTTCCC
CTCTTTTTCCCTCTTTTAGTTTATTCCCATTTAAAAAAAGCCATTCAAAA
AGCGATATACTACAAAAATATTGATTATATACCTCAAAGCctcagttttc
aaaaattacattaAAAATACTGATAAAAATACTATGTTCCTTTTCAGGCT
TTAAGTTAACAAGCCCCAGGCGTATTAAGGACATAAGCGTCAAAGATTTA
GAAGTAGCTGAAGATCGCACAAAATATGCTGGTTCTTTTAATCTGTTTAT
AATCTGTTTTTCTCCATCTTTACTCTTCAGGTTGGTTTGGATTACAAGAA
CCCCTATTTGAGTCCTTTCCAAGAGTTCCAGGTaaactttctcatttttt
ggaACGTCTCAATGAATTATATTTAAGAAGGAAAATTACGTTGGGATAAA
ATGCATAACGCGATATTTTATTCAATAACATCTTTTTAACGAGGAAAGGC
TTGGAGAAAATATAACAGCGTAGGATTTAAAGATTATTAGACTTTTTTGG
TGTGTCCGTATTATTTTCACAGAGTCTTGAGATTTTAAACCTGAATATCT
CAACATGTAGAAAATGGAGATATAATGGACAATGCAGTTTCTGATAGCAT
TCTTTCAGGGCTACAAAATAGTATGATCTAAATCTCGCAAATATTATTTG
ACGAGGGGGGAATGCCTAAAATGAGCATCTCAGGGTGAAAAATTGATTAT
TTGACTGCATCACATTGCatcaaagtcaaattttacCAGAGTGTTCTCCT
CGGAGAATCtccaaaaaaaacattaaaaaaaggtgTGCGTCAAGCACCCT
CTAAAGTTAAATTACGAGGATTATGAAGTGTTGTGATGCTGATTAGTTAT
ATAACTTAGCTGTATAACGAAACCACAATATTTTGAGAGgatgttttttt
gtgtttttttttgtaccAATTGTTGGTGTGTTTTGCCTTTTAGATTATGT
AACTTTTAAAACCGCTTTTAGCACTAAAAATATTTACGTTGTAACAAACA
CCTAAGAAATAGGGGGAAAGAGGGAAAATGAGGGTTGTTAAAGTTCCCtt
ctatttcatttttttctctttcactTTGAACCGGGAGTAcccgggggtac
ttaggcaaaaatgggtgcttggtatgtgcgtgccttaaGGGTCGGGGTTT
TCACATTGAAAAGTTTCCCTACGGGTTGCATGAACCAAAAAAGTTTAGGT
TAttttctctaagggtcaccttttcagcaaaaaatcaGTCTGTCAAGGCT
AATGGTTCGGATATCACCGATGATCACGTCCTCGTACCCTATTCTGCCAG
GCGTGTTCACCCTTGTTCGATTGGGATGTTATCTATAcagttgtttttct
ctttcccGAGTGTTTTACCCCTTTTTTAGTTCACGTTTTTAATGATCAAA
GGATAGATCCTATGGTAGAGAAAAAGGGGATATCGTCTCTCTTAGTTTTG
AGTTATATAAAGATGAATGAAAGCGACAACATGTTGATATTTTCTAAATC
AATTTATTCAAACGTTTTGTCAGCCTTTCCAGCCAACATCATCAGTGAAA
ACGACTTTAGTTATAGTTTTGAGTTGTTTCTCTTTTTGTGTATATGGCGC
TACAAATTTCCGATATTCTCTACTTTCTCATGGTTGAATCAATGTTCACT
TCAGGGTTGTGACCTATGCAATTCCGTTTCGAAAAATGGAAGTTTTTTAG
TTACTTATACTTGAATAAGTTTACAAGTTGCGACGTGAGaacaaaaaaca
ttttaggCATATGCCTTCAGATCACGTTTTTTGATGAATATACAGATGCC
TTAGAGAAACGTGACTTCCAGCATGCTATTCTCAGTCTTCTACAACTTTT
TTCGAAGGTACCGATATTTATCGGTTAAATAACCGGTCATCGGTTCTATA
TGTTATACAAACTACACATCTTCACAGAATGTAGAAAACCTCTGCACTTA
CGTAAATACGTATACGCGCACTTACATTACCGAATCTTGGAAACCTCTAC
AACTAGAATTTGTTCAAAGTTATCCGGCACACCAACACTTACATCACCCA
ATTCATAATTGTGTAAAAGGAGACATGATTATTGTTTNACAACTAGAATT
TGTTCAAAGTTATCCGGCACACCAACACTTACATCACCCAATTCATAATT
GTGTAAAAGGAGACACGATTAttgttttcatatttcgatAGAAATCggca
attttgtaattttttagcTGGATTACCCTACATGTTATTGTCTAAAGAAC
AGATGATAGGCTAAAGAAACGATGATAGGCGAAAGAACCGACATTCGCTA
ATTTGAACATATCCTTGACTGTTAGAGAAGCAGGGAGTTATATTAGAATT
TAGTATTACCTATCTTTTAAATCCCTCTACTCGAATTTCCAGCTCATTTC
GATCCTTCCAAAGAATTTAGATTTATAATCTCAAAGGAAAAGTTTCAAAG
TTAGGTTACACAGGATTTATAAACTGGTCGATATGAACCTATTTCTACTG
AGAAGTCAACCCAAatctaaaattcaataaaacagccgtaatgacggctg
caaactccggtaattgtcatttttgaataGCGAACCATTATGCAAACATC
TTTATCATGGTCAGCCTTTCTTGAacgtaaaatttaaaagagtatatcct
AGTAAGTGCGANccccccccccccccccccgtttatttggaacctaagag
tagatGGTTGGATGGTGTCTTCAATGGTCCCGAGTAAACCTTCAATTTGT
TTGCCTGTAACTATTACTAAAACCGAGATTTGATGATCGAATTCATTTGT
TTTTACAGAGATGGAAAACACATCCAAGTATTCGGGAAACATTTGAAGGT
GGCACCAGAATCGCTTATGGCGCCAGAGCTTTGAATGAAGGAGGCTACCA
GGTGAGTTGCCTGATCTTGTGATAACTTTTGTAAGGGGTGGAATGGTGGA
ATGTTCTAACTTGTCAACTGACGGAAAAtttagttgtttttattttattc
agtAAATGAAATTAAGTAAATAGAGTGTCCGGAATATCGTAAAATCTTTG
GGATATCTTTGAAAAGCTTTGGAAAATCATAGGAAAGGGGGTCATTTGTT
CAATGTTATGTATTTATTTGTTAATGCTCGTCTTTTATATCCTTCGAACC
AGTCATTACCGAAGCTAACGTTCCCCGGAGGATGTGTGATCGGATGCTCA
GCTGGATTCATGAACGTGCCAAAGATCAAAGGAACACACGGTGCCATGAA
GAGTGGTCTGTTAGCCGCTGAATCAATCTTCGAAGCGTTGTCTGACGAAG
TCAACCAAGAGAAAGAATCTGGTTAGTATGGACTCTTGATATATTATATA
CAAAATCTCTTTCAAATTACTAAAATATCCGAATCATGGAGAGTATTTAA
TACGATTTCGCGGGGACTATGTTTTTGTTCGGATTAAGAAAGATTTTAAT
ATAGCATAAATTTTTGTAGNAAACCGAGATTTGATGATCGAATTCATTTG
TTTTTACAGAGATGGAAAACACATCCAAGTATTCGGGAAACATTTGAAGG
TGGCACTAGAATCGCTTATGGCGCCAGAGCTTTGAATGAAGGAGGCTACC
AGGTGAGTTGCCTGATCTTGTGATAACTTTTGTAAGGGGTGGAATGGTGG
AATGTTCTAACTTGTCAACTGACGGAAAAtttagttgtttttattttatt
cagtAAATGAAATTAAGTAAATAGAGTGTCCGGAATATCGTAAAATCTTT
GGGATATCTTTGAAAAGCTTTGGAAAATCATAGGAAAGGGGGTCATTTGT
TCAATGTTATGTATTTATTTGTTAATGCTCGTCTTTTATATCCTTCGAAC
CAGTCATTACCGAAGCTAACGTTCCCCGGAGGATGTGTGATCGGATGCTC
AGCTGGATTCATGAACGTGCCAAAGATCAAAGGAACACACGGTGCCATGA
AGAGTGGTCTGTTAGCCGCTGAATCAATCTTCGAAGCGTTGTCTGACGAA
GTCAACCAAGAGAAAGAATCTGGTTAGTATGGACTCTTGATATATTATAT
ACAAAATCTCTTTCAAATTACTAAAATATCCGAATCATGGAGAGTATTTA
ATACGATTTCGCGGGGACTATGTTTTTGTTCGGATTAAGAAAGATTTTAA
TATAGCATAAATTTTTGTAGAACACTCTGAATCGTTGATACTCTATTTAG
GAAAGGAATTATTTTGTACTAACTAAAAATCTTAGAATAACTTAAGGTCA
TATAAATAAGGTCCACTAATCTACATTCTGATGCGATCCTGAATAAATAG
TTTTTAAGGATTGCAGTCACGAATGTGTCTTTATTTTTTTACACAGGAAT
TGAACCAAGCACTTACGGACAGCGATTCAAAGATAGTTGGCTACACAAAG
AATTGTATTCTGCAAGAAACATTCGCCCGTCTTTCGAAACACCGTTACAT
TTGTGGGGAACCATGCTCTATACTGGCCTCTTTTATTGGCTCGGTGGTGG
TCGTGAGCCATGGACCTTCAAACACGACGGAATCGATGCTGAGAAACTGA
AACCAGCGGCAGAATGCACCCCTATTGAGTACCCTAAACCTGATGGCAAG
ATCACTTTTGATCTACTCTCATCTGTCGCACTAAGCGGCACGAATCATGA
TCACGACCAACCTGCTCatttgactttgaaaaatgatgacgttCCTGTTG
AACGAAACTTAGGAGTTTTTGATGGGCCTGAAGCACGTTTTTGTCCAGCG
GGTGTTTACGAGTACATCGACGATGAAGCAACGGGTGGACGTAAATTACA
GATCAACGCTCAAAATTGTGTTCATTGTAAGACATGTGATATTAAATGTC
CAAGTCAAAATATCAATTGGGTTGTCCCTGAAAGTGGTGGTGGTCCTGCT
TACAGCGGAATgtaaaaaatacagaaaaacattttttataacaaGACGGc
tataaaaaaatgaaacttccaATTCTATGAAAAAGTGGAAGAAGTGATAT
TGACAAAAAACCaagggaaaattattttttatccagtaaaaatataaaaa
aatttaacgaaaaaatTTACGGCACTTGTACATAATAACATTACATTcta
ctttgtttttttgtttgttttattttaccattccaaaatatcttttttta
acaGAATTTGAATTTAGAACATGCTTTGTGAGCTAATGATTTGATCCATA
AGTGTATAatataatttgatattttctatAATTCTTTGGTTTTCTCTTCC
TATTCAAGAtggaaaaagccaaaaaatgtgattttgaattttgcaCAAAA
GTGCAACAAATATCCTTGTATTTGAAATTTTCGGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040044XLOC_040044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063873-exon-scaffold_404-1491911889:230447..230516TCONS_00063873-exon-scaffold_404-1491911889:230447..230516Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1510915933:230447..230516TCONS_00063873-exon-scaffold_404-1510915933:230447..230516Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1575043694:230447..230516TCONS_00063873-exon-scaffold_404-1575043694:230447..230516Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1491911889:230641..230722TCONS_00063873-exon-scaffold_404-1491911889:230641..230722Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1510915933:230641..230722TCONS_00063873-exon-scaffold_404-1510915933:230641..230722Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1575043694:230641..230722TCONS_00063873-exon-scaffold_404-1575043694:230641..230722Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1491911889:230899..231017TCONS_00063873-exon-scaffold_404-1491911889:230899..231017Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1510915933:230899..231017TCONS_00063873-exon-scaffold_404-1510915933:230899..231017Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1575043694:230899..231017TCONS_00063873-exon-scaffold_404-1575043694:230899..231017Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1491911889:231338..231415TCONS_00063873-exon-scaffold_404-1491911889:231338..231415Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1510915933:231338..231415TCONS_00063873-exon-scaffold_404-1510915933:231338..231415Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1575043694:231338..231415TCONS_00063873-exon-scaffold_404-1575043694:231338..231415Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1491911889:231762..231908TCONS_00063873-exon-scaffold_404-1491911889:231762..231908Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1510915933:231762..231908TCONS_00063873-exon-scaffold_404-1510915933:231762..231908Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1575043694:231762..231908TCONS_00063873-exon-scaffold_404-1575043694:231762..231908Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1491911889:233096..233161TCONS_00063873-exon-scaffold_404-1491911889:233096..233161Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1510915933:233096..233161TCONS_00063873-exon-scaffold_404-1510915933:233096..233161Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1575043694:233096..233161TCONS_00063873-exon-scaffold_404-1575043694:233096..233161Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1491911889:233651..233722TCONS_00063873-exon-scaffold_404-1491911889:233651..233722Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1510915933:233651..233722TCONS_00063873-exon-scaffold_404-1510915933:233651..233722Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1575043694:233651..233722TCONS_00063873-exon-scaffold_404-1575043694:233651..233722Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1491911889:241477..241527TCONS_00063873-exon-scaffold_404-1491911889:241477..241527Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1510915933:241477..241527TCONS_00063873-exon-scaffold_404-1510915933:241477..241527Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1575043694:241477..241527TCONS_00063873-exon-scaffold_404-1575043694:241477..241527Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1491911889:244005..244097TCONS_00063873-exon-scaffold_404-1491911889:244005..244097Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1510915933:244005..244097TCONS_00063873-exon-scaffold_404-1510915933:244005..244097Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1575043694:244005..244097TCONS_00063873-exon-scaffold_404-1575043694:244005..244097Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1491911889:244349..244517TCONS_00063873-exon-scaffold_404-1491911889:244349..244517Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1510915933:244349..244517TCONS_00063873-exon-scaffold_404-1510915933:244349..244517Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1575043694:244349..244517TCONS_00063873-exon-scaffold_404-1575043694:244349..244517Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1491911889:245543..246533TCONS_00063873-exon-scaffold_404-1491911889:245543..246533Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1510915933:245543..246533TCONS_00063873-exon-scaffold_404-1510915933:245543..246533Clytia hemisphaericaexon
TCONS_00063873-exon-scaffold_404-1575043694:245543..246533TCONS_00063873-exon-scaffold_404-1575043694:245543..246533Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:230447..246533 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.68314	1.95889	0.0223219	0.3939	0	0	0	0	2.37389	2.27787	0.000725414	0.0532039	1.769e-07	4.10392e-06	6.01361e-06	1.38787e-10	2.9935	2.72204	0.00276971	1.99843	9.86614e-08	0.0123184	3.77127	3.71763e-09	0	0	0.33062	0.205363	2.16326	3.71187
Blast
[Close]
BLAST of TCONS_00063873 vs. Swiss-Prot (Human)
Match: ETFD (Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Homo sapiens GN=ETFDH PE=1 SV=2)

HSP 1 Score: 742.651 bits (1916), Expect = 0.000e+0
Identity = 354/505 (70.10%), Postives = 410/505 (81.19%), Query Frame = 2 
Query:    2 TLSGACIETKALDELFSDWKERDAPLHTEVTGDKMYYLTESKGINIPVFKGLPMYNHGNYLVRLGNFVQWLGEQAEQMDVEIYPGIAASEVLYHEDGSVKGIATADVGIARDGSPKDTFERGMELHAKVTVFAEGCHGHLAKQIFNKFNLRENSCQQTYGIGIKELWEIDPDKHQPGLVIHTAGWPLPSDTYGGSFLYHLDEG-PLVSAGFVVGLDYKNPYLSPFQEFQRWKTHPSIRETFEGGTRIAYGARALNEGGYQSLPKLTFPGGCVIGCSAGFMNVPKIKGTHGAMKSGLLAAESIFEALSDEVNQEKESGIEPSTYGQRFKDSWLHKELYSARNIRPSFETPLHLWGTMLYTGLFYWLGGGREPWTFKHDGIDAEKLKPAAECTPIEYPKPDGKITFDLLSSVALSGTNHDHDQPAHLTLKNDDVPVERNLGVFDGPEARFCPAGVYEYIDDEATGGRKLQINAQNCVHCKTCDIKCPSQNINWVVPESGGGPAYSGM 1513
            TLSGAC++  A  ELF DWKE+ APL+T VT D+   LTE   I +P+  GLPM NHGNY+VRLG+ V W+GEQAE + VE+YPG AA+EVL+H+DGSVKGIAT DVGI +DG+PK TFERG+ELHAKVT+FAEGCHGHLAKQ++ KF+LR N   QTYGIG+KELW ID    +PG V HT GWPL   TYGGSFLYHL+EG PLV+ G VVGLDY+NPYLSPF+EFQRWK HPSIR T EGG RIAYGARALNEGG+QS+PKLTFPGG +IGCS GFMNVPKIKGTH AMKSG+LAAESIF  L+ E  Q K  G+  + Y    K+SW+ KELYS RNIRPS    L ++G M+YTG+FYW+  G EPWT KH G D E+LKPA +CTPIEYPKPDG+I+FDLLSSVALSGTNH+HDQPAHLTL++D +PV RNL ++DGPE RFCPAGVYE++  E   G +LQINAQNCVHCKTCDIK PSQNINWVVPE GGGPAY+GM
Sbjct:  113 TLSGACLDPGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPKATFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELWVIDEKNWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLVALGLVVGLDYQNPYLSPFREFQRWKHHPSIRPTLEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGILAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGVLGVYGGMIYTGIFYWILRGMEPWTLKHKGSDFERLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLRDDSIPVNRNLSIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 617
The following BLAST results are available for this feature:
BLAST of TCONS_00063873 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ETFD0.000e+070.10Electron transfer flavoprotein-ubiquinone oxidored... [more]
back to top