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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063940 ID=TCONS_00063940|Name=TCONS_00063940|organism=Clytia hemisphaerica|type=transcript|length=4398bp TTGGAAAAAATGTCCAGGAATAGAAATACCTCTTGTAGGCAAAAATCTAT AGCAATTTTAATAAGacaaaaattatcttttttcagCATTAGATAATGCT GATTGCCAATGGCATAATATACCTACAAATCAATCATGTTGGAGAATGAG TTGAACGGCTACCAAAAGCATTTCTACAAATCGAATGGATGTAAGAAGGC ATTGATTCAACAAATCTCCAAGGTGAAAAAAGGCTCCAAAGTGAAATGCA GTACGGAATCACTATCTGACCCTGCAAAAGTTATTAACTTCATTAACGGT CATCAGATTAGAGACTTGCATCGTATAGCTAAGAATAACAAAACAAGGAA AGCTGATGATGTCAAAGCTTCCAATATTATAGTTCCATCAAATGAGAAGA TCATGAGGAAATTGACTAAGGGAAAAGAACAGATATCATGCAAATGTCCT AACGGGTTCAAAAGAGGTAATAAAACAGCTCAAATCAATGGAGGATGTTT AAATCAGTCTTGCAAGAAACAAACTCATTTGTcaccaataaaaaatgaac gCTCCAAACCAAGAGTAGAGAAGAATAATCatcgaaaaaagaacataaaT GATCCTGAAGATGATAAGCCGAAAGAATATGTCCTTAGATCTTCTCAGCG CCTTCAGTATATCCACAACATGAAGAAAAGGGACATTGAAATCGACAAAC CATTAGTGGATAGGATGACAAATATGTTCAATGAACCAATAGACATTAGA TTAGATACAAAAAAGCTGAATATTCCTGTGTTAAACAACAATCCTCAATC TAGAGTAAATTGTGAATGGGGCGATTGTAGGCTTTCATTTATTAATGCAG AAGACCTTACAGACCATGTTGAATCATCTCACTTGGTTAGTTGTGAGGAA AGTGACAACTGTAGCTGCATGTGGAGAGATTGCAAGTTTTTGAATCAATC GTGTTCTTTTAAATGGCTATCAAAGCATGTTTTACGACATTGCGATTTGA AGCCATTTAAATGTGTTATTCTTGGTTGCGATATGACATTTAGTACACAG AATGGACTAGCAAGACATGTCCCAACACATTTTAATGAAAGTCGCGTTAG ACGTGCTTGTGTCTTAACACATGAAGCAGCTAGGAAGGaagaattaaata aaactaaaaGACAATTAAGTGCAACTTTGAGTACTTGTTCAGAATCAAGT AGTGGTACATTTTGTAGTAGTGGTAGCAGCAGTCTGGGTGAAGAGATCAT TTTTGACAACGCCTCAATACCAAACGTATCAGTTGGCAAACATACAGATT TTCGTGAAAATCATCATACGTTCACGACCAAGACATACAATTATGTGAAA AAGAAGATTCAAAAATCCACCTTTGATCCCTCTACCAATTCTGGATATTT AGATAAAGCTTTTCGTATTGACCACAAGGTGATAGGAAGGAGGTCCGGTA GTAATGGTACAACCGAAATGTTATTGACCCCTTCACTCAATAATTTATTC CCTCGTTCTTCATTCTGGTGTGACAGCAATGAATTTCGAAAACGTAAACA TTCTCACGTTGAAATCCCGATGAGGGACATGCCGGTcgatatcaaaaata aattatacGATTCCGAACATGCTTCAAGCATTCGACGTCGCAAGAAACGA AAGTGATCCTTTTGAATTCGTGCATCTCGATTTCTCTCAATAGAACTAAA TGTAAGTTTCAACTCATACATCCTTCTTATAACACCAAGTTCTATCAGAT AGAGCAAGAATGGCGAAGTCTGGGTTCCCAGTGGTGAGAAAACATCTACT AGAGAATAGACTGCTTTAGAAGAAGTCAGGGAAATTCTTTCCAGGATACA TTGAATTAAGTGTTTTAGCCAAGCTTATCTGTtttaattgactttttctc gtcCATTTTGTTAATGTTGGCCAGGAAAAACAGATTCAAAGTTTTTAGCT TGATTCAGGCAAGAACTACACTTTTATTTGAGAAATGTCAAATAAAGAAA GGTCGATTTCTTACTAAAAGCCATNTTTTATTTGAGAAATGCCAAATAAA GAAAGGTCGATTTCTTACTAAAAGCCTTTGGAAAGATTTTCTGTGGCACT ACTGGAAACCCAGCCTAAAGATGCTATTGCATTTTAAAACTTAATGGTTT GTTTTGTACCATACTCGATTCTGTTAAATTATTTTCCTAGGTAGTGcaat ttttcaagcaatttatttcaatttttcaagcaatttatttcaatttttca atttcaacaattccCAATTCAATTTATCCTTAGATAGGTCTatgttaatt tttctaaagCATTTTAAACAATGATGATAGTTTCTGTTGAATTTTTCCAA TGcttaaatttagatttttaactAGATATACATTTTCACATTATTTCACT TTTTCGTAGTGTATTAGTTAGCTATGTGATGGGTTTAGGTTagattttaa gcatttttagaATGGTCCTTGATCTAGCCGGGTTATCTGGTTTAAGATGT TTTTTAGTAAATAGTAATTTTCTTTTGAACATTCATTTTCGGTCTTCCCA AGGCCTATATTAGAATTACTCAAAAGATGATTTAACTTGAAACATCATTG GATTGATCAAATAAAGTTGGGTGTTTTTGGAGGGATTTAGgtcttttttt cactttatcATTCGTCTTGACAACCTATAGAATTGTTTTTGTACCACTta tttctttcttatttttgcTGTTATATCTTCTTCTAGAATACTTTAATTAT ATTACTGTCCCTTCGCCAGGCCTTCAGTGGTTTGTGTTTTTTCTCAATTA TTTTTACAGTATTTTAGATAGTTCAAAATTTTAGTCAATTGTTATGACTT ATGATTTGTGCATTCAAGAATTCAGTTTTTGAATTTAGTATTGTTTCAGT ACTTAGATAGGCATATTGAAATCAATGCAACATTAGCaccattctttttt tattgtactTGAGAGCTATCGTAACCATTTTAGACGATGTTCGTAATAAT TCTTTAATAGCATTAAAGTGAATGCGCACGtatatttttgttgatttaaA GTACTGTTTAAGAACTTAGAGCTAAGACTTAGACAATACTGCTTCCACTA ACTTCGGCAATTCAAGTCTACCTTAATCATAAAAACCTTGTTAGAGTTAA AAGTGAAACTTGTGGTGTAGAATTCCTTATGTCCTTTTGAGGGATAGTTA TTGTCTATGTCCACATTTAAtgaataatataatataaatttattgtttca tgtACATATTTTTTGTATATTCGGATAATATTGATATGGtgtataattat tttttttggttggTAAATTTAATATTTAAGTCGGTTGGTTACTCTGGTGT AGGTTTAACAATCTGTGATACTGAGTGTTGTTGAGTGGCActgaccactg acctttataaacgcTATCTTTGATATGAGTTTTTAGAAAAGCGGTACCCG GAAAGAAACCAGTGCAGTGCTTACAACAATGGTGCTACATTagtagtttt taatgaaaagagaTCTAGTGCTCTCGGTGCAATTTACACCCACATTGAGA AGTGGTACCActaaaaactccgatcaaaatgTATGGCTTGGTCGGGTTTT AAAAACTACCTTCAGGGATTATGAACACAATAAAGTCAGCAACGTATAAG GGTCAACTCTCGTGTTTTTAATCGCCCCGTGACGGCCCGGGTCATTATNC ATAAAGTCAGCCACGTATAAGGGTCAACTCTTGTGTTTTTAATCGCCCCG TGACGGCCTGGGTCATTGTGAAAACGAATCCTTAGAAATGAGTACGAGCT CGGACAAGACGAAAatatctgtttttgttttcataaataGCACTCAAACG AGAGGAAGTAATCTGAAACCTTTTCTcctattttctttctcatttaaTCC TTTAACAGGAAATCTCACAAGTGAGCTCTTAAATAAGATGAGGAAATGTC TGAAGCCGATCCGCTACAAAGAAATGTCACGATTTCCTATATGATCTGCA TATGCTCTAGAAATAGAGATGCCTGGATTTTCAATAGATCTTTCCTGGTA TCCTTTAGGCCTTCTAGTAAACAGATTAACCAAACAAGAACCTTCCGACT TTTAGTTTGACGACGGTCCTATTTTATTGTTTGTtagtgtttgttttttc ttttcataatgtaatttacaaaacatttttttagctTATTAATTGTTTAT TCAAATTGTTTGTTAGTAATATTTATTTGAACACCAAACAAATTATTCTT TGGTTTCAGAATGTGAAAAATATTGTGAACACATTGAAATGATATTACGG CTCAATCTTGATGAACCATCGTCACCGCCAAACTTTTCAAACATTCCTGT TTGTATATTCTTTCGAGTCTCCATTCTCTTTTGTCATGTATGCCATAG Run BLAST on NCBI transcript from alignment at scaffold_404:494981..500269- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063940 ID=TCONS_00063940|Name=TCONS_00063940|organism=Clytia hemisphaerica|type=transcript|length=5289bp|location=Sequence derived from alignment at scaffold_404:494981..500269- (Clytia hemisphaerica) TTGGAAAAAATGTCCAGGAATAGAAATACCTCTTGTAGGCAAAAATCTAT
AGCAATTTTAATAAGACAAAAATTATCTTTTTTCAGCATTAGATAATGCT
GATTGCCAATGGCATAATATACCTACAAATCAATCATGTTGGAGAATGAG
TTGAACGGCTACCAAAAGCATTTCTACAAATCGAATGGATGTAAGAAGGC
ATTGATTCAACAAATCTCCAAGGTGAAAAAAGGCTCCAAAGTGAAATGCA
GTACGGAATCACTATCTGACCCTGCAAAAGTTATTAACTTCATTAACGGT
CATCAGATTAGAGACTTGCATCGTATAGCTAAGAATAACAAAACAAGGAA
AGCTGATGATGTCAAAGCTTCCAATATTATAGTTCCATCAAATGAGAAGA
TCATGAGGAAATTGACTAAGGGAAAAGAACAGATATCATGCAAATGTCCT
AACGGGTTCAAAAGAGGTAATAAAACAGCTCAAATCAATGGAGGATGTTT
AAATCAGTCTTGCAAGAAACAAACTCATTTGTCACCAATAAAAAATGAAC
GCTCCAAACCAAGAGTAGAGAAGAATAATCATCGAAAAAAGAACATAAAT
GATCCTGAAGATGATAAGCCGAAAGAATATGTCCTTAGATCTTCTCAGCG
CCTTCAGTATATCCACAACATGAAGAAAAGGGACATTGAAATCGACAAAC
CATTAGTGGATAGGATGACAAATATGTTCAATGAACCAATAGACATTAGA
TTAGATACAAAAAAGCTGAATATTCCTGTGTTAAACAACAATCCTCAATC
TAGAGTAAATTGTGAATGGGGCGATTGTAGGCTTTCATTTATTAATGCAG
AAGACCTTACAGACCATGTTGAATCATCTCACTTGGTTAGTTGTGAGGAA
AGTGACAACTGTAGCTGCATGTGGAGAGATTGCAAGTTTTTGAATCAATC
GTGTTCTTTTAAATGGCTATCAAAGCATGTTTTACGACATTGCGATTTGA
AGCCATTTAAATGTGTTATTCTTGGTTGCGATATGACATTTAGTACACAG
AATGGACTAGCAAGACATGTCCCAACACATTTTAATGAAAGTCGCGTTAG
ACGTGCTTGTGTCTTAACACATGAAGCAGCTAGGAAGGAAGAATTAAATA
AAACTAAAAGACAATTAAGTGCAACTTTGAGTACTTGTTCAGAATCAAGT
AGTGGTACATTTTGTAGTAGTGGTAGCAGCAGTCTGGGTGAAGAGATCAT
TTTTGACAACGCCTCAATACCAAACGTATCAGTTGGCAAACATACAGATT
TTCGTGAAAGTAAGTCCGAAGCATTTCTCATAAAGATGGAATTTCGCTTT
ATTATTGTTTGTTCTCGTTTTACAAAATAAATCGCAATAGGCAATCAAAA
TAATGTCTCCTGGAACAGTGCCATCTGTTTCTTATTTAATTACTGTTTGT
TTTTTGCGATATTACTCAACTCTGCCTGAGAGATTGTTGACGTCATAAAA
TTCACTTTTTGCATATTTTCATGTTCTCAGATCATCATACGTTCACGACC
AAGACATACAATTATGTGAAAAAGAAGATTCAAAAATCCACCTTTGATCC
CTCTACCAATTCTGGATATTTAGATAAAGCTTTTCGTATTGACCACAAGG
TAAGTGTATTTAGAATATTCCTTATGAGATTTGGTAGCGTAGAGAGGTAA
TTAAAACTTTTTTGTATTGCCAGAATTAATTGTTAATTGTTACAGTTAAG
GGAGGTAAAATGTATGTGTTTTTTTTGTTCATTATGATAAGAATTAACTT
GAGAGATATTTTCGATGCTCTATTATGCTTCTAATTCTAAGTGAATACTT
TCTATGTTTTCCTGAAAAACCAGGAGATTGAAATTGTATTATTTTTGTTA
CCTTGGCTCCATTTTTTTCCTTAGGTGATAGGAAGGAGGTCCGGTAGTAA
TGGTACAACCGAAATGTTATTGACCCCTTCACTCAATAATTTGTGAGTTA
GACTTTAATGGTATTATTGCGCATATTGTTTTTGCATTCATTTCCAATGT
GTTGTTTCTTTCACACCTCTTCACTTTTCACACTGTCCATCATCACTTAA
ATGACAGTTTTCAAACAATCTATTGTTTGTAAGTCGTGAATCAGTCTTTC
ACCTTGTAACTAACTATAGGGATTTTATGTCTTCAATTGAGCTCAATTTA
TTTTTCATTAAATACCTCTGAATACCTAATACAGTTATGTTTCCAAAAAG
TATTGTAGTGGAAAGTGTAGTAATAAGTAGTTCGTTTGTCCAAATAGAAA
TTTTGACTCCCTTAGCTGGAAAGAAACGTACGAGCTTTTCTAAACCTGAA
CACCCTCTTTAACCAGTAAAATCATCTTTATTTTTAGATTCCCTCGTTCT
TCATTCTGGTGTGACAGCAATGAATTTCGAAAACGTAAACATTCTCACGT
TGAAATCCCGATGAGGGACATGCCGGTCGATATCAAAAATAAATTATACG
ATTCCGAACATGCTTCAAGCATTCGACGTCGCAAGAAACGAAAGTGATCC
TTTTGAATTCGTGCATCTCGATTTCTCTCAATAGAACTAAATGTAAGTTT
CAACTCATACATCCTTCTTATAACACCAAGTTCTATCAGATAGAGCAAGA
ATGGCGAAGTCTGGGTTCCCAGTGGTGAGAAAACATCTACTAGAGAATAG
ACTGCTTTAGAAGAAGTCAGGGAAATTCTTTCCAGGATACATTGAATTAA
GTGTTTTAGCCAAGCTTATCTGTTTTAATTGACTTTTTCTCGTCCATTTT
GTTAATGTTGGCCAGGAAAAACAGATTCAAAGTTTTTAGCTTGATTCAGG
CAAGAACTACACTTTTATTTGAGAAATGTCAAATAAAGAAAGGTCGATTT
CTTACTAAAAGCCATNTTTTATTTGAGAAATGCCAAATAAAGAAAGGTCG
ATTTCTTACTAAAAGCCTTTGGAAAGATTTTCTGTGGCACTACTGGAAAC
CCAGCCTAAAGATGCTATTGCATTTTAAAACTTAATGGTTTGTTTTGTAC
CATACTCGATTCTGTTAAATTATTTTCCTAGGTAGTGCAATTTTTCAAGC
AATTTATTTCAATTTTTCAAGCAATTTATTTCAATTTTTCAATTTCAACA
ATTCCCAATTCAATTTATCCTTAGATAGGTCTATGTTAATTTTTCTAAAG
CATTTTAAACAATGATGATAGTTTCTGTTGAATTTTTCCAATGCTTAAAT
TTAGATTTTTAACTAGATATACATTTTCACATTATTTCACTTTTTCGTAG
TGTATTAGTTAGCTATGTGATGGGTTTAGGTTAGATTTTAAGCATTTTTA
GAATGGTCCTTGATCTAGCCGGGTTATCTGGTTTAAGATGTTTTTTAGTA
AATAGTAATTTTCTTTTGAACATTCATTTTCGGTCTTCCCAAGGCCTATA
TTAGAATTACTCAAAAGATGATTTAACTTGAAACATCATTGGATTGATCA
AATAAAGTTGGGTGTTTTTGGAGGGATTTAGGTCTTTTTTTCACTTTATC
ATTCGTCTTGACAACCTATAGAATTGTTTTTGTACCACTTATTTCTTTCT
TATTTTTGCTGTTATATCTTCTTCTAGAATACTTTAATTATATTACTGTC
CCTTCGCCAGGCCTTCAGTGGTTTGTGTTTTTTCTCAATTATTTTTACAG
TATTTTAGATAGTTCAAAATTTTAGTCAATTGTTATGACTTATGATTTGT
GCATTCAAGAATTCAGTTTTTGAATTTAGTATTGTTTCAGTACTTAGATA
GGCATATTGAAATCAATGCAACATTAGCACCATTCTTTTTTTATTGTACT
TGAGAGCTATCGTAACCATTTTAGACGATGTTCGTAATAATTCTTTAATA
GCATTAAAGTGAATGCGCACGTATATTTTTGTTGATTTAAAGTACTGTTT
AAGAACTTAGAGCTAAGACTTAGACAATACTGCTTCCACTAACTTCGGCA
ATTCAAGTCTACCTTAATCATAAAAACCTTGTTAGAGTTAAAAGTGAAAC
TTGTGGTGTAGAATTCCTTATGTCCTTTTGAGGGATAGTTATTGTCTATG
TCCACATTTAATGAATAATATAATATAAATTTATTGTTTCATGTACATAT
TTTTTGTATATTCGGATAATATTGATATGGTGTATAATTATTTTTTTTGG
TTGGTAAATTTAATATTTAAGTCGGTTGGTTACTCTGGTGTAGGTTTAAC
AATCTGTGATACTGAGTGTTGTTGAGTGGCACTGACCACTGACCTTTATA
AACGCTATCTTTGATATGAGTTTTTAGAAAAGCGGTACCCGGAAAGAAAC
CAGTGCAGTGCTTACAACAATGGTGCTACATTAGTAGTTTTTAATGAAAA
GAGATCTAGTGCTCTCGGTGCAATTTACACCCACATTGAGAAGTGGTACC
ACTAAAAACTCCGATCAAAATGTATGGCTTGGTCGGGTTTTAAAAACTAC
CTTCAGGGATTATGAACACAATAAAGTCAGCAACGTATAAGGGTCAACTC
TCGTGTTTTTAATCGCCCCGTGACGGCCCGGGTCATTATNCATAAAGTCA
GCCACGTATAAGGGTCAACTCTTGTGTTTTTAATCGCCCCGTGACGGCCT
GGGTCATTGTGAAAACGAATCCTTAGAAATGAGTACGAGCTCGGACAAGA
CGAAAATATCTGTTTTTGTTTTCATAAATAGCACTCAAACGAGAGGAAGT
AATCTGAAACCTTTTCTCCTATTTTCTTTCTCATTTAATCCTTTAACAGG
AAATCTCACAAGTGAGCTCTTAAATAAGATGAGGAAATGTCTGAAGCCGA
TCCGCTACAAAGAAATGTCACGATTTCCTATATGATCTGCATATGCTCTA
GAAATAGAGATGCCTGGATTTTCAATAGATCTTTCCTGGTATCCTTTAGG
CCTTCTAGTAAACAGATTAACCAAACAAGAACCTTCCGACTTTTAGTTTG
ACGACGGTCCTATTTTATTGTTTGTTAGTGTTTGTTTTTTCTTTTCATAA
TGTAATTTACAAAACATTTTTTTAGCTTATTAATTGTTTATTCAAATTGT
TTGTTAGTAATATTTATTTGAACACCAAACAAATTATTCTTTGGTTTCAG
AATGTGAAAAATATTGTGAACACATTGAAATGATATTACGGCTCAATCTT
GATGAACCATCGTCACCGCCAAACTTTTCAAACATTCCTGTTTGTATATT
CTTTCGAGTCTCCATTCTCTTTTGTCATGTATGCCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00063940-exon-scaffold_404-1575043694:498961..500269 | TCONS_00063940-exon-scaffold_404-1575043694:498961..500269 | Clytia hemisphaerica | exon |
TCONS_00063940-exon-scaffold_404-1575043694:498621..498739 | TCONS_00063940-exon-scaffold_404-1575043694:498621..498739 | Clytia hemisphaerica | exon |
TCONS_00063940-exon-scaffold_404-1575043694:498278..498345 | TCONS_00063940-exon-scaffold_404-1575043694:498278..498345 | Clytia hemisphaerica | exon |
TCONS_00063940-exon-scaffold_404-1575043694:494981..497882 | TCONS_00063940-exon-scaffold_404-1575043694:494981..497882 | Clytia hemisphaerica | exon |
TCONS_00063940-exon-scaffold_404-1510915933:498961..500269 | TCONS_00063940-exon-scaffold_404-1510915933:498961..500269 | Clytia hemisphaerica | exon |
TCONS_00063940-exon-scaffold_404-1510915933:498621..498739 | TCONS_00063940-exon-scaffold_404-1510915933:498621..498739 | Clytia hemisphaerica | exon |
TCONS_00063940-exon-scaffold_404-1510915933:498278..498345 | TCONS_00063940-exon-scaffold_404-1510915933:498278..498345 | Clytia hemisphaerica | exon |
TCONS_00063940-exon-scaffold_404-1510915933:494981..497882 | TCONS_00063940-exon-scaffold_404-1510915933:494981..497882 | Clytia hemisphaerica | exon |
TCONS_00063940-exon-scaffold_404-1491911889:498961..500269 | TCONS_00063940-exon-scaffold_404-1491911889:498961..500269 | Clytia hemisphaerica | exon |
TCONS_00063940-exon-scaffold_404-1491911889:498621..498739 | TCONS_00063940-exon-scaffold_404-1491911889:498621..498739 | Clytia hemisphaerica | exon |
TCONS_00063940-exon-scaffold_404-1491911889:498278..498345 | TCONS_00063940-exon-scaffold_404-1491911889:498278..498345 | Clytia hemisphaerica | exon |
TCONS_00063940-exon-scaffold_404-1491911889:494981..497882 | TCONS_00063940-exon-scaffold_404-1491911889:494981..497882 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_404 | supercontig | scaffold_404:494981..500269 - |
Blast
BLAST of TCONS_00063940 vs. Swiss-Prot (Human)
Match: AEBP2 (Zinc finger protein AEBP2 OS=Homo sapiens GN=AEBP2 PE=1 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 6.017e-21 Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1
Query: 808 NCEWGDCRLSFINAEDLTDHVESSHLVSCEESDNCSCMWRDCKFLNQ-SCSFKWLSKHVLRHCDLKPFKCVILGCDMTFSTQNGLARHVPTHFNE 1089
NC W C+ F ++ DL DH+ S H V + C+W+ CK N S S WL +H+L H KPFKCV+ GC+ +F++Q GLARHVPTHF++
Sbjct: 262 NCCWDQCQACFNSSPDLADHIRSIH-VDGQRGGVFVCLWKGCKVYNTPSTSQSWLQRHMLTHSGDKPFKCVVGGCNASFASQGGLARHVPTHFSQ 355
The following BLAST results are available for this feature:
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