TCONS_00063976 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063976
Unique NameTCONS_00063976
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063976 ID=TCONS_00063976|Name=TCONS_00063976|organism=Clytia hemisphaerica|type=transcript|length=547bp
TTGAGGCACAACACTTGGACTTAGGTTACGTTTAGCCTATTATATTTATC
ATATTCTTAATAATGTTATAGCTTGATATAGCTACATTGTCACATTTATT
CTGATATCTTGTATCTTCATAGTTGAATACTAGCTTTAGGACTTACGTTT
TGTCCACATTTACATATCTTTTACAAACTAGTtacttttgtattttgttt
ctaGTTTGAACGCACTTTACGGTAAAGAAAAAGCTGACATGCTCTTCGAT
TGAAATTTACCCGGTGTGTTCCAAGCAGTCTCCTCCTGTGTGCAGTCTGG
CACTTTTACATTCAAACAAAATACCACGCCCGGCTGGTTTTGAACTCAAA
GACAATCTCACCTGTCCCAATTTTCAACCAAATCACAACTGTTTATCTGG
TGGACCATCAATTCAAGCTATCATATACAAGATCCGTAGTTCGTCTATCA
TCCGTGATTCGTTGTTGAAACCATCACATCTTCAATCTACAGTTTGTTCA
TCTCAATCACGATTCAAAGTCATTGAAATGGCATCAACAATTGGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_404:523305..523851

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063976 ID=TCONS_00063976|Name=TCONS_00063976|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at scaffold_404:523305..523851 (Clytia hemisphaerica)
CTTCCAATTGTTGATGCCATTTCAATGACTTTGAATCGTGATTGAGATGA
ACAAACTGTAGATTGAAGATGTGATGGTTTCAACAACGAATCACGGATGA
TAGACGAACTACGGATCTTGTATATGATAGCTTGAATTGATGGTCCACCA
GATAAACAGTTGTGATTTGGTTGAAAATTGGGACAGGTGAGATTGTCTTT
GAGTTCAAAACCAGCCGGGCGTGGTATTTTGTTTGAATGTAAAAGTGCCA
GACTGCACACAGGAGGAGACTGCTTGGAACACACCGGGTAAATTTCAATC
GAAGAGCATGTCAGCTTTTTCTTTACCGTAAAGTGCGTTCAAACtagaaa
caaaatacaaaagtaACTAGTTTGTAAAAGATATGTAAATGTGGACAAAA
CGTAAGTCCTAAAGCTAGTATTCAACTATGAAGATACAAGATATCAGAAT
AAATGTGACAATGTAGCTATATCAAGCTATAACATTATTAAGAATATGAT
AAATATAATAGGCTAAACGTAACCTAAGTCCAAGTGTTGTGCCTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040101XLOC_040101Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063976-exon-scaffold_404-1491911889:523305..523851TCONS_00063976-exon-scaffold_404-1491911889:523305..523851Clytia hemisphaericaexon
TCONS_00063976-exon-scaffold_404-1510915933:523305..523851TCONS_00063976-exon-scaffold_404-1510915933:523305..523851Clytia hemisphaericaexon
TCONS_00063976-exon-scaffold_404-1575043694:523305..523851TCONS_00063976-exon-scaffold_404-1575043694:523305..523851Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:523305..523851 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.57446	1.0685	0.475381	0.232543	1.35647	0.671126	0.269895	0.631681	0.0884509	0	0	0.209716	0.488657	0.579971	0.0596019	0.191886	0.236388	0.161526	0.557894	0.622086	0	0	0	0.109415	0.901559	0.100578	0.143926	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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