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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063953 ID=TCONS_00063953|Name=TCONS_00063953|organism=Clytia hemisphaerica|type=transcript|length=8258bp transcript from alignment at scaffold_404:620189..645613- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063953 ID=TCONS_00063953|Name=TCONS_00063953|organism=Clytia hemisphaerica|type=transcript|length=25425bp|location=Sequence derived from alignment at scaffold_404:620189..645613- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063953 vs. Swiss-Prot (Human)
Match: PRIC3 (Prickle-like protein 3 OS=Homo sapiens GN=PRICKLE3 PE=1 SV=2) HSP 1 Score: 208.764 bits (530), Expect = 1.324e-55 Identity = 120/340 (35.29%), Postives = 176/340 (51.76%), Query Frame = 1
Query: 673 GIKCLQCKSNCFGFLQHHWRRCCVNCRCPLWKHDVPPAYLDLP---------FERLRLEENDPPEITEYERAREDGYEWVPRVPERWQAEKYMRSLPLEKVPKKHSTGGDERARQLVYQLPKQDYNIKY--ANSVTDEKSHKSFNDMKRRLVRDSLGVG--SIIPSIQQETACSNCFQDIAIGTVAVVANRFDSSNVWHPSCFKCCIDGELLVDMIYFCWDNRLYCGRHHGELFKPRCHGCEELIYVGEYTKAMGKLWHLDHFCCWQCDMPLTSKKYIAINNQPFCITCYNNIIANRCDICKEPIGPDSKDLFVNEKHYHS--RCLVCATCNIPLEAKSF 1647
G C C+ C GFL H WR+ C +C+CP +H V +DL F+R + ++D +E Y WVP + Q ++ LP +KVP +S G R +QL++QLP D +Y A ++K ++F+ ++R ++LG G I P C C + I G +AV A+R WHP CF C ELLVD+IYF ++YCGRHH E +PRC C+E+I+ E T+A G+ WH+DHFCC++C+ L ++Y+ ++P C CY A CD C E IG D + +H+H+ RC C+ C L + F
Sbjct: 24 GQPCNSCREQCPGFLLHGWRKICQHCKCPREEHAVHAVPVDLERIMCRLISDFQRHSISDDDSGCASEE-------YAWVPPGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHDSEAQYCTALEEEEKKELRAFSQQRKR---ENLGRGIVRIFPVTITGAICEECGKQIGGGDIAVFASRAGLGACWHPQCFVCTTCQELLVDLIYFYHVGKVYCGRHHAECLRPRCQACDEIIFSPECTEAEGRHWHMDHFCCFECEASLGGQRYVMRQSRPHCCACYEARHAEYCDGCGEHIGLDQGQMAYEGQHWHASDRCFCCSRCGRALLGRPF 353 The following BLAST results are available for this feature:
BLAST of TCONS_00063953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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