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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063954 ID=TCONS_00063954|Name=TCONS_00063954|organism=Clytia hemisphaerica|type=transcript|length=534bp
CTTTGCTACTTTTAAAGCTGCCGATTGCTGTTGAAATTGCCTTTAAAGGA
TCTGATTGAAATTATTTATATTTGTACCTAAAATGGACGAGGATTATAGT
GTATTTGTCTTCAAGTATAATGGAGAAGAAAAATATGGAAGTGACTGGGC
ATGTTATTGGAAGGCAGAGGGGAAAAAGAACGGCGATAGAGTCCAATATA
AATTAGGCAAGAAGAAGGTTTACGACGTTACATTAGTCCAATACTTCGAA
CGTAACGACGACGCTACAGTATTCATAGAGGCGAagaattaaaaacaaac
aaatacaaAACAACCCAAGAAAAAAGGAGACAAAAACCAAGAGAACCATG
GAGCTGAGAACGAAACAAACGAAAAAGAACATGAAGAGCGTCCACAAACA
GaaaacgaaaattttcaaatcaaaataggaaacataaaaacaaatacCAT
CAACTTTCAAGACTTTCAATCATCGGAAGAACAGAATCTGGTGGAAGTGG
AAAACggtaatttcaaatcaattgcAGTTTTCTT Run BLAST on NCBI transcript from alignment at scaffold_404:660223..662311- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063954 ID=TCONS_00063954|Name=TCONS_00063954|organism=Clytia hemisphaerica|type=transcript|length=2089bp|location=Sequence derived from alignment at scaffold_404:660223..662311- (Clytia hemisphaerica)
CTTTGCTACTTTTAAAGCTGCCGATTGCTGTTGAAATTGCCTTTAAAGGA
TCTGATTGAAATTATTTATATTTGTACCTAAAATGGACGAGGATTATAGT
GTATTTGTCTTCAAGTATAATGGAGAAGAAAAATATGGAAGTGACTGGGC
ATGTTATTGGAAGGCAGAGGGGAAAAAGAACGGCGATAGAGTCCAATATA
AATTAGGCAAGAAGAAGGTTTACGACGTTACATTAGTCCAATACTTCGAA
CGTAACGACGACGCTACAGGTAATAACATTGATTTTATTTACGGTCTAGA
AATTTAATTTGATGATATTATTGATCTACAAATTTAATCTTAGTAGCACC
AACGTACGAGGTCTAATAAATTTTTGTGTACTACAGAGAAAATTACATAA
ATCTCATGTTGGTGAAGTGTGGAAGGTTCCAGTTTTCAGGAAGAGGGTCG
CAATATATTTTTTGTGAGATATATCTATAAATCATCATATTATTTTTTCA
TTGGTTTTGAAATTGTGGATATAACATGACATTTTCTTTTCGTGTTTACG
AAATCAAAACAATACATTCCATTCGAACGTTCAGAAGACATTGCAATGGT
GCATATCATGAATATTCATATTCTGGAGAAATCGTTCGAATCTTTCAGGG
CCTATTAACACTGCAAATTTTTTAAAAGCTTATTTTGAACTGTTTGGCTT
TTTGATCTGATTAAGCCCCATTAAGCCTTTCACTGGCGCCTCCAAAATTA
CAGAGAAAACTTTCTGCGGCGTGAAAGTGATTTTCTTACACTTTTTTCGA
CATTTGTATCCTCTGTAAAGCGAAGATTTCTTCGATTTTCCCCTTAGAAG
AGCTCATAGATCTTACAATGTTGCCCCCTTAAAATTCCCAACCTCAAAAG
ATTTCAAATATCTGAAAAACCCTCCTCTTTCTAGTATTCATAGAGGCGAA
GAATTAAAAACAAACAAATACAAAACAACCCAAGAAAAAAGGTATATCAT
AAGATCTTCCATTTTAACCCAAATTTCTTAAACTCTATCTAGTTCGGAAG
GGAGTCTGAACTCTGAAAAATTATCAAAGTGCAAATCTGAATTTTGAACT
AAAACGTCATGTTTAAAGTATACTACATAAGCAGATCAATGAGAAAAGGG
ACAGGGGGCTAAGGCCCTAAAGAATGCACTTTCTTGTTGAGCTTTGTGGA
AACGATTTTTTAAATATTCCAGGAGACAAAAACCAAGAGAACCATGGAGC
TGAGAACGAAACAAACGAAAAAGAACATGAAGAGCGTCCACAAACAGAAA
ACGAAAATTTTCAAATCAAAATAGGTATAATTTCTTTTAACTACTTCTAC
AGTCGAACGTGTTAACCGCACTGGCTCAACTTCAGTATCTTTCTTGTAGG
CCCAATTGTAAAAATGATGAAAAAACTAAGGTTTTAGCCTCGTTTTGGGG
CTAAGATTGGTCACCACGCCCCTAAAAATATAAATTTTGAAAAAAAAGGA
AAAATACACTCCCAAAGAATCAAGTGTGAAAAATGTCAGCCAAATCGAAC
CATTTTTGAAGTCCCCAGCCTGCCCCAAAGTTTTTAGCCTCGTTTTGGGG
CTAAAACTCGTGACCACGCCCTTAAAAAATCAAAATTTTGAAAAAATGGA
AAAAAACAAGCCCAATCGGACCATTTTTGAAGNTCAAAATTTTGAAAAAA
TGGAAAAAACATCCTAGGGATTCACCCAAGGATCAAGCCCAATCGGATCA
TTTTTGAAGTCTCCAGCCTGCCCCTGCCACAGATTCTAGCTCAACTGAAG
TTGATAACTACCCTTTCTTCAAAATTCATCACTTTAAAACAAATTTTTTT
GAGAGCTTCCGAATGGGGCGAAAACCTATGGTACGAATCTAGTTTTTAGA
AACTTTCTTTCGGGAGACTTTTCAGGAGAGTGCTTCGATTCGATTTTTTT
TTTCATTAAAATTAATTTCCATCTTTTTTACAGGAAACATAAAAACAAAT
ACCATCAACTTTCAAGACTTTCAATCATCGGAAGAACAGAATCTGGTGGA
AGTGGAAAACGGTAATTTCAAATCAATTGCAGTTTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063954-exon-scaffold_404-1575043694:662043..662311 | TCONS_00063954-exon-scaffold_404-1575043694:662043..662311 | Clytia hemisphaerica | exon |
| TCONS_00063954-exon-scaffold_404-1575043694:661321..661377 | TCONS_00063954-exon-scaffold_404-1575043694:661321..661377 | Clytia hemisphaerica | exon |
| TCONS_00063954-exon-scaffold_404-1575043694:660988..661089 | TCONS_00063954-exon-scaffold_404-1575043694:660988..661089 | Clytia hemisphaerica | exon |
| TCONS_00063954-exon-scaffold_404-1575043694:660223..660328 | TCONS_00063954-exon-scaffold_404-1575043694:660223..660328 | Clytia hemisphaerica | exon |
| TCONS_00063954-exon-scaffold_404-1510915933:662043..662311 | TCONS_00063954-exon-scaffold_404-1510915933:662043..662311 | Clytia hemisphaerica | exon |
| TCONS_00063954-exon-scaffold_404-1510915933:661321..661377 | TCONS_00063954-exon-scaffold_404-1510915933:661321..661377 | Clytia hemisphaerica | exon |
| TCONS_00063954-exon-scaffold_404-1510915933:660988..661089 | TCONS_00063954-exon-scaffold_404-1510915933:660988..661089 | Clytia hemisphaerica | exon |
| TCONS_00063954-exon-scaffold_404-1510915933:660223..660328 | TCONS_00063954-exon-scaffold_404-1510915933:660223..660328 | Clytia hemisphaerica | exon |
| TCONS_00063954-exon-scaffold_404-1491911889:662043..662311 | TCONS_00063954-exon-scaffold_404-1491911889:662043..662311 | Clytia hemisphaerica | exon |
| TCONS_00063954-exon-scaffold_404-1491911889:661321..661377 | TCONS_00063954-exon-scaffold_404-1491911889:661321..661377 | Clytia hemisphaerica | exon |
| TCONS_00063954-exon-scaffold_404-1491911889:660988..661089 | TCONS_00063954-exon-scaffold_404-1491911889:660988..661089 | Clytia hemisphaerica | exon |
| TCONS_00063954-exon-scaffold_404-1491911889:660223..660328 | TCONS_00063954-exon-scaffold_404-1491911889:660223..660328 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:660223..662311 - |
Blast
The following BLAST results are available for this feature:
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