TCONS_00063896 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063896
Unique NameTCONS_00063896
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063896 ID=TCONS_00063896|Name=TCONS_00063896|organism=Clytia hemisphaerica|type=transcript|length=2312bp
GATTTGTTTAACACGATGAAGAATTCAATCGTACATAATAGTTGGGTTGT
AACCAGCCTCGTGATCAATGGAACTGTGATATTCTCCATGCAATGTGCAA
CTTCAACTGGCTTCATTATTTCGGACCACAAGCAATAACCGTCCGAGGAC
GAATGATGAGATACGTGGCCATAAAGCAACACAAAAGCTCAAATAATGAT
TTCAATCGATCCAAAGTGAAAGCTGTACCTGGTCCTTTTCAGGAATCGGC
CTCTCCTCCCAGAGAAAGAGACTCCATCCGATTTCACACTATTCCGGAGA
AAGAAGTCGATTCTTTGAGGAATATCGCAGTCAAATTGAATGACCCCGGA
ATCCAAAGCCCTGGTAAAGCAAAAGATTCATTTGAAGAGCAGATGACTTG
TAAACTACCAAAAATCGATCCTTTCGATAAAGAAGTTCTCCCTTTCATAA
AGCACCCACGAAAATTTGAATGTAAGAAAATTCAAGAAGAATTCTCTTAC
ACTGAGGGAGAACAAATCTATTTGAATAAGACTCTATTTGAGAACTACAA
GAAAAGGACAAAGCGACGCATCAAATGTTTTTGGAAACACTTGTTCAAGA
AAGAGGGTCACAAGAATGGCATTAAAAATACGAAACTGGCTAAATTGACG
GCAGCCGAACCGATCAAATTCCCGTCTTCTGGTATGGTTCAGGTTGAGTG
TTTTGTAGGAAAGAAAGGGAAACGTAAACACGTTTATTTTAACGTTCATG
TCCAAACGCAACCTATTAAAGAACCTTTACAAAAGCCTACCGAGGATGAA
TTGTCAGTTTACATGTTGATATTCGAAAGTATGGCCACAGCACGTTTTAA
AAGACATATGAAATCGATCGATAAGCTTTTGAAAGAGAgacaaactttct
tttttgatggttataaTAAAGTGGCTGATAATACGTACGTCAATCTCGTT
CCTATGTTGACTGGATTACGCTCAAATAACGGACAGCGCGATATGAAAGA
TGAATTTCACCGGAAATACCGGAAAATCAACTcgtttgatgagatagatg
atTTTATATGGAAATCTTTTTCTCGGAAGAATTATACAACAGCTTTCTTC
GAAAACGCTTTCAAACTCTCGACGTTCGGTTACGGTAAAAAAGTTGGTTT
CAAAAGCGCTAAACCGTTTGATTATTTTTACCGCCCTTATTTTATGCAAC
ATAATGTGCTTTCGAAACGCAGCACTAAGTATTGTTTTGGGAACGAGCCC
TTTGTTTCAACTCAAATGAAGTTTGCTCATAACTTGTTTGATTGGTATGG
taacaaacaaaaattatttgttgTTAACATTCTCACTGAACCTGGTCACG
GGGATGAGAATGACATCGAACGCGCGGACGATCTCATCGCGGACTCTCTA
CGTAAACTCTTCTCGAAAAACTCATTCAACAGAACTCTGATTTTCTTGAT
GGGTGATCACGGACCTCGTTACGGAGACGTTCGACTTACACGTAATGGTT
ATTTCGAGGAACGATTAACATTTTTATCAGTTGTGACTCCTCCTTGGTTT
CACACTAATTACCCCAATCTCACTAATAATATGAAACTTAATCAGAAGCG
ACTGGCCACGCCTTTCGATGTTcatcaaactttgaaagatattttagaGG
GGAACTATCGAGGAGGTCAACTGAAATATAAAACTCAACGAGGAATCAGT
CTTTTCGATGAAATACCGTGGAACAGAACCTGCACAACGGCTGGGATACC
TCAGCTATACTGTCCTTGTTATAATAAACCAAAAGAAACAGTTATAGACA
CGCCACTCTCCAAGAAATTAGCTGGCATAATGGTGCAGCATATTAATTTA
ATGCTTTCTAAACGAAAACTTAATGTGAAATGCGCGACTTTAAAGCTAGA
TTCGATTAGACAGGTGACTTTGATGAACGAAAATGGCGACGAGGTTCTCT
ACAAAGTTCTTATAAGGGCAACACCGGGTGGCGGGCTTTTCGAAGGCTTG
GTAACGAAAAATAAAGACAGTTTTTCCATTCCTGACGGTGCCGTCAGTCG
ATTGAACCTATATGGAAGACAAGGAAAATGCATAAAGTCaggattccaaa
aatattgTTATTGCAATGAACAATAAGTTTATTGGGGACAAATTGTAGTT
CTATTGTTTTTCGAATTGTTAAAGTAAAtatgataaaatgaaaatcctgG
TTTAGGATAgacaaatttcttttgatagcttttcattaaaaaaaaggtCA
TAAATCAACCTATCATAATTTAATAGTGGCGTGATAGCACAAAATCTGAA
TGCAAAACTTTA
Run BLAST on NCBI

transcript from alignment at scaffold_404:682333..685679+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063896 ID=TCONS_00063896|Name=TCONS_00063896|organism=Clytia hemisphaerica|type=transcript|length=3347bp|location=Sequence derived from alignment at scaffold_404:682333..685679+ (Clytia hemisphaerica)
GATTTGTTTAACACGATGAAGAATTCAATCGTACATAATAGTTGGGTTGT
AACCAGCCTCGTGATCAATGGAACTGTGATATTCTCCATGCAATGTGCAA
CTTCAACTGGCTTCATTATTTCGGACCACAAGGTTGGTAAGAATATTATT
TTAAGTTAGCTCTCTTAGATCTTTATACATTTAAAAAGCCTCacagttta
tttttttttcaaacttgcTCATGTGGAAAGTTCATTGGTGTGGATTAAAT
AAGACTGAATTAACATACAAAGATAtaacaaataaaacaaattcaatGTT
TATCCCAGAAATTTGTtagtttttctcttttcattttctaaCAAGTTTAA
AGACTATatgtgaaaatttaaaacatcaCATCGAGTTACTTGGCAGCTAG
GTAACAAGTGGATTGAAATAGAATGAACGTGTAGGAAGACGTTATATCCA
TAATTAGGGTAAATGATTGATTTGACACCCTCCTCCCTAGTTAGTTTGGT
CATGGCTAAACGATAGATAGGCCACGTTAAGCTGAACTTCCTCATACTAA
AGTCAAACTGGAAGAAAGCATTTCCAATGATATCAATTTTCTACTGCACA
TCATGATTATGTGTCGTTTAGAAAAATAATATTGCTGCAGCTGAATCAAT
TAATTGTGTAAAAATGAAAAGCAATTAAAACCGCTTATTAGCtttgtgtt
tttcaaaattacaaatttaTCAATCTTGTCGGTATAGTAATGTAAGGAGA
GAAGTCTATACGATATATTGTTTTGAGTAGCTACTGAATACAGACATGGG
TGTTTTCAAGAAACTCTTTTCCATCTTGCTATGCATTTTCACAATAATTT
TCACGTTCACTTGGGTCAACAATCATCTTCGAATGCCTGGTAGGTTacag
ttttagttttttttgtatCTTATTCACTGATTACCACAAAGTCGTTCATT
TCAGTGCCACTAATTATTTTTGCGGACGCTATTTAAATTTCTACACCAAC
CTTTTTTTCTTGTTAGTGACTGGTTTACTCTTATTGATATGATAACTGTA
CCGGTGAATAAACGATCGGCCCCAGAGCTTCTGATTTTGATATACTTCAT
AATCTGAAACGCCTCTAAAGTCAAGCATTGATTTAAGCAGTATTCAATCC
TACTTTTTTGTGTTTAGCAATAACCGTCCGAGGACGAATGATGAGATACG
TGGCCATAAAGCAACACAAAAGCTCAAATAATGATTTCAATCGATCCAAA
GTGAAAGCTGTACCTGGTCCTTTTCAGGAATCGGCCTCTCCTCCCAGAGA
AAGAGACTCCATCCGATTTCACACTATTCCGGAGAAAGAAGTCGATTCTT
TGAGGAATATCGCAGTCAAATTGAATGACCCCGGAATCCAAAGCCCTGGT
AAAGCAAAAGATTCATTTGAAGAGCAGATGACTTGTAAACTACCAAAAAT
CGATCCTTTCGATAAAGAAGTTCTCCCTTTCATAAAGCACCCACGAAAAT
TTGAATGTAAGAAAATTCAAGAAGAATTCTCTTACACTGAGGGAGAACAA
ATCTATTTGAATAAGACTCTATTTGAGAACTACAAGAAAAGGACAAAGCG
ACGCATCAAATGTTTTTGGAAACACTTGTTCAAGAAAGAGGGTCACAAGA
ATGGCATTAAAAATACGAAACTGGCTAAATTGACGGCAGCCGAACCGATC
AAATTCCCGTCTTCTGGTATGGTTCAGGTTGAGTGTTTTGTAGGAAAGAA
AGGGAAACGTAAACACGTTTATTTTAACGTTCATGTCCAAACGCAACCTA
TTAAAGAACCTTTACAAAAGCCTACCGAGGATGAATTGTCAGTTTACATG
TTGATATTCGAAAGTATGGCCACAGCACGTTTTAAAAGACATATGAAATC
GATCGATAAGCTTTTGAAAGAGAgacaaactttcttttttgatggttata
aTAAAGTGGCTGATAATACGTACGTCAATCTCGTTCCTATGTTGACTGGA
TTACGCTCAAATAACGGACAGCGCGATATGAAAGATGAATTTCACCGGAA
ATACCGGAAAATCAACTcgtttgatgagatagatgatTTTATATGGAAAT
CTTTTTCTCGGAAGAATTATACAACAGCTTTCTTCGAAAACGCTTTCAAA
CTCTCGACGTTCGGTTACGGTAAAAAAGTTGGTTTCAAAAGCGCTAAACC
GTTTGATTATTTTTACCGCCCTTATTTTATGCAACATAATGTGCTTTCGA
AACGCAGCACTAAGTATTGTTTTGGGAACGAGCCCTTTGTTTCAACTCAA
ATGAAGTTTGCTCATAACTTGTTTGATTGGTATGGtaacaaacaaaaatt
atttgttgTTAACATTCTCACTGAACCTGGTCACGGGGATGAGAATGACA
TCGAACGCGCGGACGATCTCATCGCGGACTCTCTACGTAAACTCTTCTCG
AAAAACTCATTCAACAGAACTCTGATTTTCTTGATGGGTGATCACGGACC
TCGTTACGGAGACGTTCGACTTACACGTAATGGTTATTTCGAGGAACGAT
TAACATTTTTATCAGTTGTGACTCCTCCTTGGTTTCACACTAATTACCCC
AATCTCACTAATAATATGAAACTTAATCAGAAGCGACTGGCCACGCCTTT
CGATGTTcatcaaactttgaaagatattttagaGGGGAACTATCGAGGAG
GTCAACTGAAATATAAAACTCAACGAGGAATCAGTCTTTTCGATGAAATA
CCGTGGAACAGAACCTGCACAACGGCTGGGATACCTCAGCTATACTGTCC
TTGTTATAATAAACCAAAAGAAACAGTTATAGACACGCCACTCTCCAAGA
AATTAGCTGGCATAATGGTGCAGCATATTAATTTAATGCTTTCTAAACGA
AAACTTAATGTGAAATGCGCGACTTTAAAGCTAGATTCGATTAGACAGGT
GACTTTGATGAACGAAAATGGCGACGAGGTTCTCTACAAAGTTCTTATAA
GGGCAACACCGGGTGGCGGGCTTTTCGAAGGCTTGGTAACGAAAAATAAA
GACAGTTTTTCCATTCCTGACGGTGCCGTCAGTCGATTGAACCTATATGG
AAGACAAGGAAAATGCATAAAGTCaggattccaaaaatattgTTATTGCA
ATGAACAATAAGTTTATTGGGGACAAATTGTAGTTCTATTGTTTTTCGAA
TTGTTAAAGTAAAtatgataaaatgaaaatcctgGTTTAGGATAgacaaa
tttcttttgatagcttttcattaaaaaaaaggtCATAAATCAACCTATCA
TAATTTAATAGTGGCGTGATAGCACAAAATCTGAATGCAAAACTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040056XLOC_040056Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063896-exon-scaffold_404-1491911889:682333..682464TCONS_00063896-exon-scaffold_404-1491911889:682333..682464Clytia hemisphaericaexon
TCONS_00063896-exon-scaffold_404-1510915933:682333..682464TCONS_00063896-exon-scaffold_404-1510915933:682333..682464Clytia hemisphaericaexon
TCONS_00063896-exon-scaffold_404-1575043694:682333..682464TCONS_00063896-exon-scaffold_404-1575043694:682333..682464Clytia hemisphaericaexon
TCONS_00063896-exon-scaffold_404-1491911889:683500..685679TCONS_00063896-exon-scaffold_404-1491911889:683500..685679Clytia hemisphaericaexon
TCONS_00063896-exon-scaffold_404-1510915933:683500..685679TCONS_00063896-exon-scaffold_404-1510915933:683500..685679Clytia hemisphaericaexon
TCONS_00063896-exon-scaffold_404-1575043694:683500..685679TCONS_00063896-exon-scaffold_404-1575043694:683500..685679Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:682333..685679 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.202441	0.169436	0.152809	0.141818	1.6231	0.709179	5.24722	5.7652	2.78379	2.75653	1.14214	2.05367	0.95287	1.14589	1.19411	1.23597	0.234826	0.391696	0.973286	1.49542	0.103479	0.238677	0.390509	0.405969	0.678283	1.26812	0.0231322	0.0246873	0	0.152618
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063896 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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