TCONS_00063987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063987
Unique NameTCONS_00063987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length290

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063987 ID=TCONS_00063987|Name=TCONS_00063987|organism=Clytia hemisphaerica|type=transcript|length=290bp
CGACCACTGACATTCCTGCCAGTTCTTCATGGAGCCCCTCTTTTTGACTA
GATTATCTAGGTAAATCGTCCACCTCACCTTTGCTATGAGGATAAGgttt
ctcttttttaataaGTATCATCCCCTTCATCCTCACTGTCAGTAAAATAA
ACATCACTTTCAACTTCTTCTTCATAATTCAAAAATGTCAATTgatttga
agaagaagaagagttCTCATTTGATTGCTGTTCTTGCTCGTCATCATCAT
TTGCTTTGTTGGGAGATGctggaaaatcaaaaatattggg
Run BLAST on NCBI

transcript from alignment at scaffold_404:785978..786267

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063987 ID=TCONS_00063987|Name=TCONS_00063987|organism=Clytia hemisphaerica|type=transcript|length=290bp|location=Sequence derived from alignment at scaffold_404:785978..786267 (Clytia hemisphaerica)
cccaatatttttgattttccagCATCTCCCAACAAAGCAAATGATGATGA
CGAGCAAGAACAGCAATCAAATGAGaactcttcttcttcttcaaatcAAT
TGACATTTTTGAATTATGAAGAAGAAGTTGAAAGTGATGTTTATTTTACT
GACAGTGAGGATGAAGGGGATGATACttattaaaaaagagaaacCTTATC
CTCATAGCAAAGGTGAGGTGGACGATTTACCTAGATAATCTAGTCAAAAA
GAGGGGCTCCATGAAGAACTGGCAGGAATGTCAGTGGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040112XLOC_040112Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063987-exon-scaffold_404-1491911889:785978..786267TCONS_00063987-exon-scaffold_404-1491911889:785978..786267Clytia hemisphaericaexon
TCONS_00063987-exon-scaffold_404-1510915933:785978..786267TCONS_00063987-exon-scaffold_404-1510915933:785978..786267Clytia hemisphaericaexon
TCONS_00063987-exon-scaffold_404-1575043694:785978..786267TCONS_00063987-exon-scaffold_404-1575043694:785978..786267Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:785978..786267 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.61738	2.12696	0	0	5.88281	0.464867	2.80421	1.57516	7.71965	13.6601	7.95527	4.64843	5.80246	3.31425	1.23853	1.86078	1.3099	1.34261	4.1735	6.30827	4.63949	2.46871	4.00138	2.72838	0	0.418001	20.9355	25.5348	3.87345	2.46652
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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