TCONS_00064004 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064004
Unique NameTCONS_00064004
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064004 ID=TCONS_00064004|Name=TCONS_00064004|organism=Clytia hemisphaerica|type=transcript|length=233bp
TATCTTGAAAGTTGCAGGCTCCTTATCAAATATCCTTCGGCATGCTAGCC
ATACCGAAGGTGAGCAAAAATGAAATATGGCTGCCTGACAACccccaaca
aaaaaaaaatgtgacgTCCTCGTTACAAGATTTCGTCGAAGATAAATTct
aaaactaaataaataataattttctaatATAAAATACTACAATCTTTTTG
GTTTATTGTTCTTCTTGTCTTGGCACCATTCTT
Run BLAST on NCBI

transcript from alignment at scaffold_405:3218..3450

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064004 ID=TCONS_00064004|Name=TCONS_00064004|organism=Clytia hemisphaerica|type=transcript|length=233bp|location=Sequence derived from alignment at scaffold_405:3218..3450 (Clytia hemisphaerica)
AAGAATGGTGCCAAGACAAGAAGAACAATAAACCAAAAAGATTGTAGTAT
TTTATattagaaaattattatttatttagttttagAATTTATCTTCGACG
AAATCTTGTAACGAGGAcgtcacattttttttttgttggggGTTGTCAGG
CAGCCATATTTCATTTTTGCTCACCTTCGGTATGGCTAGCATGCCGAAGG
ATATTTGATAAGGAGCCTGCAACTTTCAAGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040129XLOC_040129Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064004-exon-scaffold_405-1491911889:3218..3450TCONS_00064004-exon-scaffold_405-1491911889:3218..3450Clytia hemisphaericaexon
TCONS_00064004-exon-scaffold_405-1510915933:3218..3450TCONS_00064004-exon-scaffold_405-1510915933:3218..3450Clytia hemisphaericaexon
TCONS_00064004-exon-scaffold_405-1575043694:3218..3450TCONS_00064004-exon-scaffold_405-1575043694:3218..3450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_405supercontigscaffold_405:3218..3450 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32603	0.787268	3.82612	2.6588	3.69616	14.7498	3.6163	13.3139	0.533792	2.42243	0	2.68244	2.33538	1.29432	4.90073	3.72737	8.70369	6.47293	2.14022	4.68021	3.77975	5.73986	10.7442	10.6945	0	3.52084	22.1296	28.5924	1.7987	2.8349
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064004 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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