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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064000 ID=TCONS_00064000|Name=TCONS_00064000|organism=Clytia hemisphaerica|type=transcript|length=1040bp
CCACGATAAACCATTACATTATTGATAAACTCAGATCCCGACTTACTACA
AGGAAGCGTAAGACCTTCCATATAAAAGCTAAGCGCTAGTACAATGAACG
TTCGTTGTTGGGTCGGTGCAAGAGTAAAGCTTTTAACATTACTGAAGTAG
TTGAACTAAAATTTAAAGAAACATTGAACTGTTAATAACTGGGATTTATC
AGAATTGGTAATAATTAATATTGGACTCTGTACCTTAATTGGAATTAGAC
AATTCGCAAGTGACTCTGGTTTCAACAGCAAATGCCCAAGCGAAATTCCA
AAAGGACAATCATACGGCTCTTGTACCATTAAAGATGCACCAAAAAGTGC
CCTAGTTTGGAATGACCCACATCATCCAGCAATCGATTGGCATTCACTAG
GAAAACATGAAGTAAAGCAAATGGAGAGTCATGTTCTAATTCCTTCTAAG
TTGGTGGAAGCATCCAAAATGAATATGGCAAAAGCAAAACTACTCTTTTG
CTTGATAACGGTCTATTACTAAAGGACCCAGTGATGAAAGGAAACATGTT
CGAAGCCCTTAAAGACATGGTGACTGCATATTCCAAACGAATGGTATCCG
ACACTCTTGGACCTATCCTACAAGCTCACATTGTGAGTACCCTTATTAAC
CAGAAATTGGACATTATTCAAGAATGGGAAAGACTTTGTTTCATACAACA
GGAAGTGTCGAGAATTCAACGATGGATGATAGCAGCTTTTCCTACAACTG
CAGCCCGATGGATTCACCAAGAGAGTGGAGTCACCGTCCACACCGTCGGA
GAAGCCCTTCAAGTACATCgctgtttgaaaatttccaactACCGTCTGAT
CACCAATCGAAGAGTAGGAAACTTCGATATTCCAGTAAAAGCACCCTATC
ATAACCAAGTTAAATTTTTACGAATTATGGATCGACAGGTAGTAGAACAA
TCTCACAAAATCAACTGCTCAGCCAGACCCCCTATTACGTATTTACAAAA
CAATGAAGGTTCATACGAAGTAATTGATCAAGAAGGTAAG Run BLAST on NCBI protein sequence of TCONS_00064000-protein >TCONS_00064000-protein ID=TCONS_00064000-protein|Name=TCONS_00064000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MKGNMFEALKDMVTAYSKRMVSDTLGPILQAHIVSTLINQKLDIIQEWER
LCFIQQEVSRIQRWMIAAFPTTAARWIHQESGVTVHTVGEALQVHRCLKI
SNYRLITNRRVGNFDIPVKAPYHNQVKFLRIMDRQVVEQSHKINCSARPP
ITYLQNNEGSYEVIDQEGK Run BLAST on NCBI transcript from alignment at scaffold_405:36281..37456+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064000 ID=TCONS_00064000|Name=TCONS_00064000|organism=Clytia hemisphaerica|type=transcript|length=1176bp|location=Sequence derived from alignment at scaffold_405:36281..37456+ (Clytia hemisphaerica)
CCACGATAAACCATTACATTATTGATAAACTCAGATCCCGACTTACTACA
AGGAAGCGTAAGACCTTCCATATAAAAGCTAAGCGCTAGTACAATGAACG
TTCGTTGTTGGGTCGGTGCAAGAGTAAAGCTTTTAACATTACTGGAGTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAGTAAAGCTTTTAACATTACTGAAGTAGTTGAACTAAAATTT
AAAGAAACATTGAACTGTTAATAACTGGGATTTATCAGAATTGGTAATAA
TTAATATTGGACTCTGTACCTTAATTGGAATTAGACAATTCGCAAGTGAC
TCTGGTTTCAACAGCAAATGCCCAAGCGAAATTCCAAAAGGACAATCATA
CGGCTCTTGTACCATTAAAGATGCACCAAAAAGTGCCCTAGTTTGGAATG
ACCCACATCATCCAGCAATCGATTGGCATTCACTAGGAAAACATGAAGTA
AAGCAAATGGAGAGTCATGTTCTAATTCCTTCTAAGTTGGTGGAAGCATC
CAAAATGAATATGGCAAAAGCAAAACTACTCTTTTGCTTGATAACGGTCT
ATTACTAAAGGACCCAGTGATGAAAGGAAACATGTTCGAAGCCCTTAAAG
ACATGGTGACTGCATATTCCAAACGAATGGTATCCGACACTCTTGGACCT
ATCCTACAAGCTCACATTGTGAGTACCCTTATTAACCAGAAATTGGACAT
TATTCAAGAATGGGAAAGACTTTGTTTCATACAACAGGAAGTGTCGAGAA
TTCAACGATGGATGATAGCAGCTTTTCCTACAACTGCAGCCCGATGGATT
CACCAAGAGAGTGGAGTCACCGTCCACACCGTCGGAGAAGCCCTTCAAGT
ACATCgctgtttgaaaatttccaactACCGTCTGATCACCAATCGAAGAG
TAGGAAACTTCGATATTCCAGTAAAAGCACCCTATCATAACCAAGTTAAA
TTTTTACGAATTATGGATCGACAGGTAGTAGAACAATCTCACAAAATCAA
CTGCTCAGCCAGACCCCCTATTACGTATTTACAAAACAATGAAGGTTCAT
ACGAAGTAATTGATCAAGAAGGTAAG Coding sequence (CDS) from alignment at scaffold_405:36281..37456+ >TCONS_00064000 ID=TCONS_00064000|Name=TCONS_00064000|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_405:36281..37456+ (Clytia hemisphaerica)
ATGAAAGGAAACATGTTCGAAGCCCTTAAAGACATGGTGACTGCATATTC
CAAACGAATGGTATCCGACACTCTTGGACCTATCCTACAAGCTCACATTG
TGAGTACCCTTATTAACCAGAAATTGGACATTATTCAAGAATGGGAAAGA
CTTTGTTTCATACAACAGGAAGTGTCGAGAATTCAACGATGGATGATAGC
AGCTTTTCCTACAACTGCAGCCCGATGGATTCACCAAGAGAGTGGAGTCA
CCGTCCACACCGTCGGAGAAGCCCTTCAAGTACATCgctgtttgaaaatt
tccaactACCGTCTGATCACCAATCGAAGAGTAGGAAACTTCGATATTCC
AGTAAAAGCACCCTATCATAACCAAGTTAAATTTTTACGAATTATGGATC
GACAGGTAGTAGAACAATCTCACAAAATCAACTGCTCAGCCAGACCCCCT
ATTACGTATTTACAAAACAATGAAGGTTCATACGAAGTAATTGATCAAGA
AGGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064000-exon-scaffold_405-1491911889:36281..36417 | TCONS_00064000-exon-scaffold_405-1491911889:36281..36417 | Clytia hemisphaerica | exon |
| TCONS_00064000-exon-scaffold_405-1510915933:36281..36417 | TCONS_00064000-exon-scaffold_405-1510915933:36281..36417 | Clytia hemisphaerica | exon |
| TCONS_00064000-exon-scaffold_405-1575043694:36281..36417 | TCONS_00064000-exon-scaffold_405-1575043694:36281..36417 | Clytia hemisphaerica | exon |
| TCONS_00064000-exon-scaffold_405-1491911889:36554..37456 | TCONS_00064000-exon-scaffold_405-1491911889:36554..37456 | Clytia hemisphaerica | exon |
| TCONS_00064000-exon-scaffold_405-1510915933:36554..37456 | TCONS_00064000-exon-scaffold_405-1510915933:36554..37456 | Clytia hemisphaerica | exon |
| TCONS_00064000-exon-scaffold_405-1575043694:36554..37456 | TCONS_00064000-exon-scaffold_405-1575043694:36554..37456 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_405 | supercontig | scaffold_405:36281..37456 + |
Blast
The following BLAST results are available for this feature:
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