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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064052 ID=TCONS_00064052|Name=TCONS_00064052|organism=Clytia hemisphaerica|type=transcript|length=3119bpRun BLAST on NCBI protein sequence of TCONS_00064052-protein >TCONS_00064052-protein ID=TCONS_00064052-protein|Name=TCONS_00064052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp QVLPCDVLTRVSQYVPENVAYIQRIIQNGFGYESNGSVYFDTVKFANSEKRun BLAST on NCBI transcript from alignment at scaffold_407:26081..44639- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064052 ID=TCONS_00064052|Name=TCONS_00064052|organism=Clytia hemisphaerica|type=transcript|length=18559bp|location=Sequence derived from alignment at scaffold_407:26081..44639- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_407:26081..44639- >TCONS_00064052 ID=TCONS_00064052|Name=TCONS_00064052|organism=Clytia hemisphaerica|type=CDS|length=21462bp|location=Sequence derived from alignment at scaffold_407:26081..44639- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064052 vs. Swiss-Prot (Human)
Match: SYCC (Cysteine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=CARS PE=1 SV=3) HSP 1 Score: 588.571 bits (1516), Expect = 0.000e+0 Identity = 305/509 (59.92%), Postives = 380/509 (74.66%), Query Frame = 1
Query: 4 VLPCDVLTRVSQYVPENVAYIQRIIQNGFGYESNGSVYFDTVKFANSEKHEYAKLVPEAVGDINALAEGEGDLSQASS--GEKKSDRDFALWKKSKPGEPEWDSPWGKGRPGWHIECSVMASDILGSNIDIHTGGVDLKFPHHDNELAQSEAHYGCDQWINYFLHAGHLTIEGCKMSKSLKNFITIKDALKKNSARQIRFAFLLHSWNSTLDYSTNVLKEAEQAEKLFGDFFLTVKDILRKPENMKIDAHNYREAEKTLQTNFLEKKRQVHNALCDSIDTVNALHQMQALVKLANIYIGQCKQNEQTPNHSVLRGIAKYLTRMLKVFGANEGDQEIGFSAGGSAAA-NKEEMVMPFINVMAEFREDVRKIAREEKVTGILRLCDDVRDDKLVEIGVKLEDQEGGLAPIVKLVDRETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPSELFIKETDKYSQFDENGVPTHDAAGEKLSASQIKKLKKQYTQQEKLYKKYV 1521
VLP DVLTRVS+YVPE V ++Q+I+ NG+GY SNGSVYFDT KFA+SEKH Y KLVPEAVGD AL EGEGDLS ++ EK+S DFALWK SKPGEP W PWGKGRPGWHIECS MA +LG+++DIH GG DL+FPHHDNELAQSEA++ D W+ YFLH GHLTI GCKMSKSLKNFITIKDALKK+SARQ+R AFL+HSW TLDYS+N ++ A Q EK +FFL VKDILR P ++ + E E L NF +KK +H ALCD++DT + +M+ALV N+Y+ K + PN ++L IA YLT MLK+FGA E D +GF GG + + E VMP++ V++EFRE VRKIARE+KV IL+L D +RD+ L E+GV+ ED E GL +VKLVDR TLLKE+++K E+K+K+KEEA +++ ++ AK K K PPSE+F+ ETDKYS+FDENG+PTHD G++LS Q KKLKK + QEKLYK+Y+
Sbjct: 232 VLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTIAGCKMSKSLKNFITIKDALKKHSARQLRLAFLMHSWKDTLDYSSNTMESALQYEKFLNEFFLNVKDILRAPVDITGQFEKWGEEEAELNKNFYDKKTAIHKALCDNVDTRTVMEEMRALVSQCNLYMAARKAVRKRPNQALLENIALYLTHMLKIFGAVEEDSSLGFPVGGPGTSLSLEATVMPYLQVLSEFREGVRKIAREQKVPEILQLSDALRDNILPELGVRFEDHE-GLPTVVKLVDRNTLLKEREEKRRVEEEKRKKKEEAARRKQEQEAAKLAKMKIPPSEMFLSETDKYSKFDENGLPTHDMEGKELSKGQAKKLKKLFEAQEKLYKEYL 739 The following BLAST results are available for this feature:
BLAST of TCONS_00064052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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