TCONS_00064092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064092
Unique NameTCONS_00064092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064092 ID=TCONS_00064092|Name=TCONS_00064092|organism=Clytia hemisphaerica|type=transcript|length=610bp
gatatattggatattttgtccagggggtagtgaaaaatctgcgaaatttg
ccttgttttaggGACAAACTTTCTctgattaggggtgatttttAATGTcc
aggggtcaactgatgcttgtccggggggtcaaaattcacaatgtccgggg
tgTTAATTTCCAAATGtcatatcctccaccccctacattcaaattttttc
tgaaagagcccAATGATGTCTTTGATCTGTAATGATCAGTAAAATCGAAC
GTGCTTTATTGAAATTGGGGGtcctaacttaaattttgatgtattatTTT
TTACACTTGGACAATTGGTTCAAAAGCTATGGTCacttaaagtcaaaaat
aaCTCTTCAAAaactgaaccaaatttaaaaagtaacagctgaaaattcaa
attcttGATCCATTCTGCTCAAAGGCGTTACCAAACATCTGAAGTTTTCT
TTGAACCACCCAGTATTTTCCTCTACTCGACTAATAAAAGATAAACATTG
ATACCATGTTCACAAGGAATAAAGAAGTGACAAGAACTTATCAAGCTCAA
TTAAATTTTACATAAAATATGATTTCGAAACTCTGAGGTGTATTTtaacc
accccccccc
Run BLAST on NCBI

transcript from alignment at scaffold_407:172878..173487

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064092 ID=TCONS_00064092|Name=TCONS_00064092|organism=Clytia hemisphaerica|type=transcript|length=610bp|location=Sequence derived from alignment at scaffold_407:172878..173487 (Clytia hemisphaerica)
gggggggggtggttaAAATACACCTCAGAGTTTCGAAATCATATTTTATG
TAAAATTTAATTGAGCTTGATAAGTTCTTGTCACTTCTTTATTCCTTGTG
AACATGGTATCAATGTTTATCTTTTATTAGTCGAGTAGAGGAAAATACTG
GGTGGTTCAAAGAAAACTTCAGATGTTTGGTAACGCCTTTGAGCAGAATG
GATCaagaatttgaattttcagctgttactttttaaatttggttcagttT
TTGAAGAGttatttttgactttaagtGACCATAGCTTTTGAACCAATTGT
CCAAGTGTAAAAAataatacatcaaaatttaagttaggaCCCCCAATTTC
AATAAAGCACGTTCGATTTTACTGATCATTACAGATCAAAGACATCATTg
ggctctttcagaaaaaatttgaatgtagggggtggaggatatgaCATTTG
GAAATTAAcaccccggacattgtgaattttgaccccccggacaagcatca
gttgacccctggACATTaaaaatcacccctaatcagAGAAAGTTTGTCcc
taaaacaaggcaaatttcgcagatttttcactaccccctggacaaaatat
ccaatatatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040180XLOC_040180Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064092-exon-scaffold_407-1491911889:172878..173487TCONS_00064092-exon-scaffold_407-1491911889:172878..173487Clytia hemisphaericaexon
TCONS_00064092-exon-scaffold_407-1510915933:172878..173487TCONS_00064092-exon-scaffold_407-1510915933:172878..173487Clytia hemisphaericaexon
TCONS_00064092-exon-scaffold_407-1575043694:172878..173487TCONS_00064092-exon-scaffold_407-1575043694:172878..173487Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:172878..173487 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0884732	0	0	0	0.954488	0.377125	0.454985	0.532439	0.149109	0.184696	0.17927	0.117845	0	0	0.75357	0.269565	0	0.0680747	0.564294	0.0984154	0.171082	0.375515	0.304325	0.18445	0.379959	0.932537	0	0.12947	0.0981983	0.500243
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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