TCONS_00064080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064080
Unique NameTCONS_00064080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064080 ID=TCONS_00064080|Name=TCONS_00064080|organism=Clytia hemisphaerica|type=transcript|length=1601bp
TTTGAATTTACATTTTAGaatttaggaaattttaaataaaGGATGTTGCA
TTTGCAAAGGCGATTTGTCACCTCAAGAACGACATGTATACCGAGCCTTA
AAAAGACATTCACTAAAGCCCTATCTACACGTACAGAGTTTACGCATCGA
ACTGAAGAGAATGTGATTCGTGGAAATAAATCCTTGGAATATCCAGTCGA
AGattgcttcacttttttcagCAAACGTTTTGAACAATTTGGCGAGCGCG
TTGCTATGATCGGTCGTATATGTATCGCACCACCTATCCTGCTGTTTCTC
ACTAAAAGCCCGTTGGTTGATCAGTATGACATGTCCAGTCTCAAGTCTAT
TATCGTTGGAGCAGCGCCTGTTGATGAACAACTTTCACATGCTTTTAATG
AAAGGTTCCCTTGGATAACCTTGCAGCAATGTTATGGGATGACAGAAGCT
GGTTTCGCCACGCTCCAGGCTAATGATGCTTCATTTAACAGTGCAGGATC
AGTAGGTCAAATCTTGGCTGACGGTGAATGCAAGaTAGTATCTCTAACGA
CAGGCGAATTTTTGGGTCCATATGAACAAGGTGAAGTCTACCTGAGAGGA
GCACAGCAGATGTTAGGTTATTTAAACAACGAGAAGGCAACAACAGAAAC
CATTTTGGAAGACGGTTGGCTACGCTCTGGTGATTTAGGTTACTATGACG
ACGAGAATAATTTATTTGTCATCGACCGTTTGAAAGAGTTGATCAAATAT
AAAGGTTTCCAGGTTGCACCTGCCGAGCTGGAAGATTTATTGATTTCTCA
CGAAAACATTGTGGATAGTTGCGTGATTGGCGTCCCATGCGAAAGAGCTG
GAGAAGTACCACGCGCCTATATCGTCAAAAAGCCTGGTAGTGATTTAACA
GAAGATGAAGTGAAAGATTTTGTAGGTGAACGATTTTCTGATCATAAACA
TCTCCGTGGTGGAGTACAATTCGTAGAACAATTACCGAAATCGGCATCAG
GAAAACTCCTTCGTAGAGTGCTCAGAGATCAATATTTGGAGGAGAGGGAG
TGAATTAGATGattatttatgaaatatttttcagggAATTTTTGAATGCT
GtgaaattttaagggaaaatttcaaaaacgaCATATCAAACCAACTTGGC
GGTTGCTTAAGCGAAATGGAGTACGGGGACGTAAATTCCGGGTTTACCTT
AGGACATCCTTACTAGTTTTCAGGGTGGGTTACGCCTTTCAGGGCCCAAA
TTTGGTTCCCATTTCGTTTAAATTTTGTCTGACATAGTCCATATTTTGAA
CATAAGCGGCACGCCCTCACCGACCGCAGTACCTCCCTCCCCAGTTGTGG
TGACTAACGATATTTCCCCATGtattaaacttttaaaattctcgttgtta
tatatattttttgttaatGTATATACGATAGAATATGTATTTTAAAGCAT
AGTGAGTACAAAGTATTGGttaaactgttttaaattttctcatcTGACCA
ATGAGAATTCGTTATTATATACGTCCTGATgcattacccatgattcatct
GGAACAAGTGATTGCCTATGGATAATGCAAGAAAACAAAATAACCCAATC
A
Run BLAST on NCBI

transcript from alignment at scaffold_407:349283..355695-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064080 ID=TCONS_00064080|Name=TCONS_00064080|organism=Clytia hemisphaerica|type=transcript|length=6413bp|location=Sequence derived from alignment at scaffold_407:349283..355695- (Clytia hemisphaerica)
TTTGAATTTACATTTTAGAATTTAGGAAATTTTAAATAAAGGATGTTGCA TTTGCAAAGGCGATTTGTCACCTCAAGAACGACATGTATACCGAGCCTTA AAAAGACATTCACTAAAGCCCTATCTACACGTACAGAGTTTACGCATCGA ACTGAAGAGAATGTGATTCGTGGAAATAAATCCTTGGAATATCCAGTCGA AGATTGCTTCACTTTTTTCAGCAAACGTTTTGAACAATTTGGCGAGCGCG TTGCTATGGTAAGAGACGTGTTTGTTTTGATTTATTTGCAGACTCGGAAT TTTTTCAGTGTATGTTTAGGGTAATTTGATGACCGTGTTGCGATGGTAAG AAACTTTTTCATTGATTAGTTTTTGGCAGACTCGAAAAAGTTATTGATTA TACTGTATTAAGTATTGGTAAATTTGATCCTCTTAATTTTTTCTAAGCAA ATTTTGTCATCGGTGCAAATCAAAAGTTTTCTTCGGGAGGAATGATATCG CAGATGAACGACCAGTGCACCCCTTTAAAAAGAGTTCCAAACGGCATGGT TGAGCCTCGTCTTGATGAAGAAAATTATATTTTTTGTCATTTTCAGGTTG ATGGTGTAACAGGTGTTGAATTAATTTTTTCTCAACTAGTTCAGAATTCT CGAAAACTGGGTTCGTATTTTCATGAAAAGAATTTCAAATTGAGAGATCG GGTTTCAATTTTTCTTCCAACGTGTACGGAATACTCTTACTCTATGCTTG GGGCGTTTGCAAACGGCATGGCGGTCACAACTATACACCCCACCTTCACC GCCCATGAGATGCATAATCAAATCAAAACATCAACGCCCAAAGTTGTGAT CACAAATGCACATTTATTAGATACCGCCCGTCAAGCTTCAGAAAACAGTT CCATAGAAACAATAATATGTTTAGACGATACGTCAATCTCCGACAGCGGC GTCGTCAACATGTCGGATATCTTACAAAACGGCGACGAAAATTTCTCAGC TGATCTGTCAGCTATCGATCCTGAAAAAGACATTGCTTTTATCTTATACT CAAGCGGCACAACAGGGCTCCCGAAAGGCGTCATGATCAGTCATTTTAGT ATGATAAATTGTTTGCTCCAGGTCCGGGAGTTTTTTGGAGAAAACATGCC GGATAACGTATTAGCGGTCATCCCGGTATATCACATGTACGGAATGGTAC TTTTTCTCTTTGTTAACCCTTACCATGGCAACAGGGTATATACATTACCG AGTTTTGATCCAGTTCAGTTCTTATCAAGCATACAGAATTATAAGGTATT TTTTTTGTCATAAAGTGTGCCTACAATCTTGTTGTTTTCTTCTGACGTTG ATAAAGACTATTCTCAGACGTTACAGTTTTGTATCGTTCCGAAACGAAAC GGTTTTGAAACTAGTGTGCACGTCAAAATTCGAAACATCAAAAAAGAAGA CGTTACAAAGTAAAACAGATCGAAACAGCTTCGCTCCACTATTTTCATCG GAACGGAACTAGTCCGTTTTCTTGCTCCGAAACGTTCCGGAACTAATATG AACACTCTCGATCCGTAACAGAAACCATACCGGAACGATACGAAACAGTA ACGTCTGAACATGGATAAAATCTAATTCTGGTGATGTTCCAATCAGATCC AAAGATTTGCATCATCGATCACAAGATAGGGCATCTCCTCATTCTAAACT TACACAAATTGACATACTGGAATCATTTATAGGTCAGCATTGATCACCAC TATTTTAGAGGGGAACCTTTGAATCGAACATCACTTTTAAACTAACTCCA GACCGCCATAGACGACTTGTCACCAATATCATCTGCGTCTAGGCTAAAAA TGTTTATAAAATCTAAAACATATCCCAGGTAAAAGATTTACGTAAATCTA AAATCGCTAGCGAAAATCAAAGCGCTGCATAGAAAGGCTTCGGACACATA CGGCTATTAAGCAGTTATTGGACAAAGTCGAATCCAATATGCAAAAAATT TGGGCGTGCGAGAAAAGATATTGGACGAGGCTCGTAATATAGAAGTACAT GTTTAAAAATATCAAGTGACCCCATATCACTGAATTCATAGTGAATTCAT AACTTACCCACATTATCGATTTCCATTAGATCGGTCGTATATGTATCGCA CCACCTATCCTGCTGTTTCTCACTAAAAGCCCGTTGGTTGATCAGTATGA CATGTCCAGTCTCAAGTCTATTATCGTTGGAGCAGCGCCTGTTGATGAAC AACTTTCACATGCTTTTAATGAAAGGTTCCCTTGGATAACCTTGCAGCAA TGTAAGTTTATGCTTCCTCCAATGGAAAATAAAAGCACACTGAAGTATTT GAATTCAACTCGAAAGGAAGCGTTCACTTTTTCTGAATTTTCCTGAGGGA AATTTCAAGCCAGATTATCATACCGATGGCCTAGCACAAAAAATTTAAAA ATTTCCTTCTGACAGGCTAAAGCTCTGAAAGTTGCCAAAACTTCAGATTT ATAAAGTTTTGCTACGGAAGAATTGTCCGCTAATTCAGAGCTTTGATGTG GACGGCCGCTACTCCGCTATCCAAATATTAGATCGGATACAAGTAGTTGA TGAATTGTAATTCTCTTTCAGGTTATGGGATGACAGAAGCTGGTTTCGCC ACGCTCCAGGCTAATGATGCTTCATTTAACAGTGCAGGATCAGTAGGTCA AATCTTGGCTGACGGTGAATGCAAGGTACGGGAAGAAACAAAGAAATTAT AGTTTACTTTCTTCTTACTTAAAATCGCGCTACCTTACAATCGTGTCGAA ATATATTGAGATTGTTTTGACATTTGAAAGTCTTCAAAATTCAAAGTTCT TTATTTCATCGGAATTTTCTTACGAGTCGTTTAATGGATTCCAGGAAATA CTTTCAGCCTTTTTGGAACATTTTTGAGCTTCTCGATCCTGAAATCCTAA GGTCATCGTAGGTGGTGGTAAGTATTAATTCTAATGTTAAAACTTTCACT AGTGTACATTGAAATTTCATCCACCTTAGAAACTACATATTTTAAATTCT ATCTCCCCTAGGAGAGAAACGATAGAATCTCTGCCGTAAATAGAAAAAAA ACTTAATTCCAATCGATTGAAATCAAATGCATGGAAATGGGGTTTCCCAG TATCAACAGTCTCAAAACTACATCTATTTCAGGAGCATTGAAAACACCTC TTGCCCTATAGACATCTTTGTGATCTTCTTTCTAGATAATATCTCTAGGA ACAGTCGATATATTCTTTAATTTTCCTTTTAGATAGTATCTCTAACGACA GGCGAATTTTTGGGTCCATATGAACAAGGTGAAGTCTACCTGAGAGGAGC ACAGCAGATGTTAGGTGAGCAATCCGTAAAAATTCATTCAGAAGATCATC TTTTTCAGTGGGGAGTATATTTCTAGTTTGAATGTATTTTTAAAGAAGAA TCAAACTTTGAATAATTTTACAGACGTGTAAGGTCCTTGGCCAAACTATG ACCTTGGTGAGTGCTAAAAGCCAGTTGCTGTAAGTTTACAATAGGAATTA GAATTTTAGACAGGGTACCTGAAAGGAAAAAATTCTGACAAATTTAGCTG AAATCCGCCAAATTAAGTCCGCCGAATTAAAATTCTTTTTGTCCCATCAC GTCAGTGACACAAAGAGTGTAAAAAATATTTCAACCAATTAACTGATTTC TCTCCCTTTCAAATTATTTTCTTTAAACTTATCAGGTTATTTAAACAACG AGAAGGCAACAACAGAAACCATTTTGGAAGACGGTTGGCTACGCTCTGGT GATTTAGGTTACTATGACGACGAGAATAATTTATTTGTCATCGACCGTTT GAAAGAGTTGATCAAATATAAAGGTTTCCAGGTATGAGACTGACGGACGA ATAGGTCATTATTATTTCACCGGTCAATCATTAGAATCGATATTTTACGT TTACTCAAGAGAATATCATGGTCTGGCATAACAGACTTGACTATCTATTT ATATGTACAAAAAGTTTAATTTTCGAGATGAGATGATTTTTGAGATAAGG GTATTTTTAGTTTTAGACCATTTAAAGTGGTAATTTTTCATTCTTTGGGC TTAAACCAGTCTATATTATCCCATTTACTATCCAAAGGGCTCTACTCGGC TACCGTGAAAAGCACAGGTCGAAATCATATATCGACGCTGTGCCGACCAA TCCAGATTCTATTCAGCACGTAATCAACGCAGAGAAAAGTAACCATGACG ACCATCCAAGATCTTGGATGAAGTTGATATTTTTATTCCCATCGTTGAAA ACACAACTCAAAAATGTCACCATTGCTTTTTAAAAAGAGTCAGTGATAGA GAATCATAATGTAAAGTCTGTCTATTATTTCGATTCAATAGACCTTATCG GAGTTTTTGATTTTTCTAAAAAGGGGTTCATTGTGGGATTGTTTCGAGTG TATTACAATAGAATTCCCTCGAGGAGTTCCTAAAAGATTTCTATTGTAAC ACACTCGAAACAATCCCACAATGCATCGCTTTTTTAGAAAAATAAAAAGC TCCGATAAGGTCTATTAAAGTGACATTTCCATAATCAAAAGTTTAGTAAT TACTATTATACATTTGGGAATCATGTACAAGATTTCTTATGAAATAAACT CATTTCAATTACATTTGGAGGTTTCTGGGGAATTTGTAAATAGTAAACTG CATGCTGATACAGTCTGCTAGACATTAATATGCTCTTCATCTTTGATTTT CTCTACAGTGATTAGATTGACACATGCGCGATAGAACTTCTATTATTGGT CTTCAGAGGTTGTCACCCTCTGATACTCAGGGTACTCCTCGGCGGATGCG ATGCCGGGTGACGGCTAGTACTATTCTAATGTTTTAACCAAAATTTTGAG GGAACACTTAATACCTAGAAATCAAAACAATCAAACCCAGGTTCTTTAAT TGATGACCAGGTATACATGTTTTTTTTTTTATAAGCAAGTGTATGCCCCT TGGTCAGGCTCGTGTATGCTTAAGTTCTCAAAGCATCCAGGCATAGTTTA TGCTTATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCACCCCGAGCCAAGTT TTTTAATGAAATTTCAGAAATTTTGTAAAAAATTTGTTCAGATTTTTGGA GCAGTGGAATGTAGCTAGCCGTGGAATGTCTAATTTTTTACTTGACCTCT ACCAAACCAGTAAAAAATGAAACAAAAAACAGATAAAAATTACCACTTGA AAAATATTTTAGGCTGACATATATGCTCATGTTATGCTTAGGAATTCCGC AAATCTGAGCCTTCATATGCTTATAAGCGTTATGCTTATAAAAAAAAAAC ATGTACGGGATACGGGATGGTGAGCATTATAGAGCCAAAGAATAGAACAT GATACCTTTGTAACCATTGCGGTCGCCGGATGAGAAAGCGAAGTGATCCA CAATATGTTGTACAATATGTATCTGGAAAATAAAAAAAAAATTCACAGTT TCAATGTTATTTCTGTTTATTTAGGTTGCACCTGCCGAGCTGGAAGATTT ATTGATTTCTCACGAAAACATTGTGGATAGTTGCGTGATTGGCGTCCCAT GCGAAAGAGCTGGAGAAGTACCACGCGCCTATATCGTCAAAAAGCCTGGT AGTGATTTAACAGAAGATGAAGTGAAAGATTTTGTAGGTGAACGATTTTC TGATCATAAACATCTCCGTGGTGGAGTACAATTCGTAGAACAATTACCGA AATCGGCATCAGGAAAACTCCTTCGTAGAGTGCTCAGAGATCAATATTTG GAGGAGAGGGAGTGAATTAGATGATTATTTATGAAATATTTTTCAGGGAA TTTTTGAATGCTGTGAAATTTTAAGGGAAAATTTCAAAAACGACATATCA AACCAACTTGGCGGTTGCTTAAGCGAAATGGAGTACGGGGACGTAAATTC CGGGTTTACCTTAGGACATCCTTACTAGTTTTCAGGGTGGGTTACGCCTT TCAGGGCCCAAATTTGGTTCCCATTTCGTTTAAATTTTGTCTGACATAGT CCATATTTTGAACATAAGCGGCACGCCCTCACCGACCGCAGTACCTCCCT CCCCAGTTGTGGTGACTAACGATATTTCCCCATGTATTAAACTTTTAAAA TTCTCGTTGTTATATATATTTTTTGTTAATGTATATACGATAGAATATGT ATTTTAAAGCATAGTGAGTACAAAGTATTGGTTAAACTGTTTTAAATTTT CTCATCTGACCAATGAGAATTCGTTATTATATACGTCCTGATGCATTACC CATGATTCATCTGGAACAAGTGATTGCCTATGGATAATGCAAGAAAACAA AATAACCCAATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040173XLOC_040173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064080-exon-scaffold_407-1575043694:355438..355695TCONS_00064080-exon-scaffold_407-1575043694:355438..355695Clytia hemisphaericaexon
TCONS_00064080-exon-scaffold_407-1575043694:353395..353566TCONS_00064080-exon-scaffold_407-1575043694:353395..353566Clytia hemisphaericaexon
TCONS_00064080-exon-scaffold_407-1575043694:352971..353074TCONS_00064080-exon-scaffold_407-1575043694:352971..353074Clytia hemisphaericaexon
TCONS_00064080-exon-scaffold_407-1575043694:352332..352413TCONS_00064080-exon-scaffold_407-1575043694:352332..352413Clytia hemisphaericaexon
TCONS_00064080-exon-scaffold_407-1575043694:351815..351960TCONS_00064080-exon-scaffold_407-1575043694:351815..351960Clytia hemisphaericaexon
TCONS_00064080-exon-scaffold_407-1575043694:349283..350121TCONS_00064080-exon-scaffold_407-1575043694:349283..350121Clytia hemisphaericaexon
TCONS_00064080-exon-scaffold_407-1510915933:355438..355695TCONS_00064080-exon-scaffold_407-1510915933:355438..355695Clytia hemisphaericaexon
TCONS_00064080-exon-scaffold_407-1510915933:353395..353566TCONS_00064080-exon-scaffold_407-1510915933:353395..353566Clytia hemisphaericaexon
TCONS_00064080-exon-scaffold_407-1510915933:352971..353074TCONS_00064080-exon-scaffold_407-1510915933:352971..353074Clytia hemisphaericaexon
TCONS_00064080-exon-scaffold_407-1510915933:352332..352413TCONS_00064080-exon-scaffold_407-1510915933:352332..352413Clytia hemisphaericaexon
TCONS_00064080-exon-scaffold_407-1510915933:351815..351960TCONS_00064080-exon-scaffold_407-1510915933:351815..351960Clytia hemisphaericaexon
TCONS_00064080-exon-scaffold_407-1510915933:349283..350121TCONS_00064080-exon-scaffold_407-1510915933:349283..350121Clytia hemisphaericaexon
TCONS_00064080-exon-scaffold_407-1491911889:355438..355695TCONS_00064080-exon-scaffold_407-1491911889:355438..355695Clytia hemisphaericaexon
TCONS_00064080-exon-scaffold_407-1491911889:353395..353566TCONS_00064080-exon-scaffold_407-1491911889:353395..353566Clytia hemisphaericaexon
TCONS_00064080-exon-scaffold_407-1491911889:352971..353074TCONS_00064080-exon-scaffold_407-1491911889:352971..353074Clytia hemisphaericaexon
TCONS_00064080-exon-scaffold_407-1491911889:352332..352413TCONS_00064080-exon-scaffold_407-1491911889:352332..352413Clytia hemisphaericaexon
TCONS_00064080-exon-scaffold_407-1491911889:351815..351960TCONS_00064080-exon-scaffold_407-1491911889:351815..351960Clytia hemisphaericaexon
TCONS_00064080-exon-scaffold_407-1491911889:349283..350121TCONS_00064080-exon-scaffold_407-1491911889:349283..350121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:349283..355695 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.455829 0.486319 0.233094 0.265756 0 0.00297462 0.0322704 0 0.265122 0.847257 0 0.213086 0.381628 0.461862 9.04684e-08 1.42285 0.991884 1.77961 1.09447e-05 0.34676 1.99326 1.83753 0.183817 0.279307 0 0 0.498009 0.968594 1.16037 0.162226
Blast
BLAST of TCONS_00064080 vs. Swiss-Prot (Human)
Match: ACSF2 (Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 5.193e-25
Identity = 73/253 (28.85%), Postives = 120/253 (47.43%), Query Frame = 1
Query:  280 PPILLFLTKSPLVDQYDMSSLKSIIVGAAPVDEQLSHAFNERFPWITLQQCYGMTEAGFATLQ--ANDASFNSAGSVGQILADGECKIVSLTTGEFLGPYEQGEVYLRGAQQMLGYLNNEKATTETILEDGWLRSGDLGYYDDENNLFVIDRLKELIKYKGFQVAPAELEDLLISHENIVDSCVIGVPCERAGEVPRAYIVKKPGSDLTEDEVKDFVGERFSDHKHLRGGVQFVEQLPKSASGKLLRRVLRDQ 1032
            P + + +   P    YD+S++   ++  +P   +L  A   +     L   YG TE    T      D     A SVG+I+   E +I+++  G        GE+ +RG   MLGY    + T E + +D W  +GD+   +++    ++ R K++I   G  + PAELED   +H  + +  V+GV  +R GE   A I  K G + T +E+K F   + S H  +   + FV   P + SGK+ +  LR+Q
Sbjct:  357 PTMFVDILNQPDFSSYDISTMCGGVIAGSPAPPELIRAIINKINMKDLVVAYGTTENSPVTFAHFPEDTVEQKAESVGRIMPHTEARIMNMEAGTLAKLNTPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRLKDGEETTVEEIKAFCKGKIS-HFKIPKYIVFVTNYPLTISGKIQKFKLREQ 608          
The following BLAST results are available for this feature:
BLAST of TCONS_00064080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACSF25.193e-2528.85Acyl-CoA synthetase family member 2, mitochondrial... [more]
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