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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064131 ID=TCONS_00064131|Name=TCONS_00064131|organism=Clytia hemisphaerica|type=transcript|length=2421bp
CCAGTTTCCACcgggaacgatattttggccaatttttccactgggaaggg
gtcccagtgggtctgtgagaagggggtgcatGCAATTCCACCATAATTTA
TCATTAGCCAAATCAAACCAATTATTGTCATTTAAAACATTAGCCTTTTT
CAAATTAGACAAACCCTTTTCTACGCAAATTTTGGGGCACCTTTAGGACG
TTTAGATATAAAACCCAACGAAAAAGCAGTTTGCGTAGCAAACGATCAAA
GCTAGTTCTTGCAATTAGCGTCGAGTAATATAGTAATATACCAGGTGGGT
CAAAAAAAAGTATTAAATTGctagaataaaaaacaaaataaacaatcttC
CATTGTGAAGGAATTTGGTTGAGCTGATCAAGACCTACTGATATTGCAGA
CTGGGCGACACAAGAGTTCACACCTACGCCATTAAGATACCAATTTTCAc
ccattgtcaatatatttcaagACAATTTCATCGAAAAACGAAACATACAA
AATTCAGATGGTCAGCCTGTTAATTCATTAAAACTTCGCCAGTGGTTTAT
GCCTCTATATGACAAATATTGTGAAGTGCTCGGCTTCAAATGTTCCATGG
CTAAAGGGTGCGGTTTTGATGACAATTGTCCAGTTGATACAATATGTGAG
GGTGAAGGTGAAACACATGAATGCGGTGAATGGGGCGAATGGGGTTCATG
GGCTTGTAGTGAATGTGGTGTTTCATTGCAAAAGAAAAGAACACGCGAAT
GTACAGGGTGCAATGGAGAAGAAGAACAAATTCAATACTCTGAAGATCCA
ACAGATTGCTGTAACGTTCTACACAAAGTGTATGTCCGAGTTGCATTgta
cgaaaatactgatgctgGTAGTAATTATGAACCCTACGGTGATATGAAGA
TCTCAATCGGTGATCGACCGgagaatcaaaacaaacaagccTGGAATGTC
GCAAGAAAAAATTGTCCAAGCTTTAAGTTGAGCACTTGGTATTATGGACC
TGATAAATATATTGAATTTTATGAACACTTTGATTTTCTTAAATCAGATG
GTAATATCTTCAAGTTACATGGACATGCTTGGGAGGCTGATAATAATCCT
GATGATCTGCTTGCAAAGTTTGATGATTTTCAAGATGATGTGAAAAAATA
TCTTGATTATGACTGGCTCCACTTCAATGGTAAAGCTGGCCATGGTAAAG
AAGAAGGTCAAGTAAAAATCAAATTCTATAAAGTTTGAATTTGACTAAAC
TTTGAAAGAGGGAAATTAATCTAAAAGTTTTATcaaagaatttaattttt
tccaggCTATGAATTTAATGTTTCATATTGGTCACATTTTTATTATTACC
TGACCAGACATCGGTTTACTGTTATGTAATATTTTGTATTATAACAGATA
TTTGTATGGCCTTTCATTAgattattgagatttattaactgGAGGTGAGT
GATATTCAATATCATTTACCGAGTAATAAATCCAATATCTAAGGAAAGTT
GACATGCAATATATGTTTTAATATATACCAAGAACCATTTCATCTATATT
CCAACAAAAGCTAGTCAATCACAAGCGTTTTGGACTATATTTTAATTGAG
GAACTAAAGCACaaataattttccaaaactGACATTAAAATATCAGAAGC
AACTCCATTGCTGGCGTGGTACTCAAGCGTGTAATAATTACCGTATCATT
GCACAGTCATTGGCAATATGGAGATTTATTTTAGAGGAAAAAAGCTTACT
GGTATgtaataataagcagatattcaatggttaaaagttggttattgaga
tttattaacccgaggtgatgtaatattcaacgaggcgaagccgagttgaa
tatacatcaccgagggttaataaatccaatatccaacgaaaacctattta
atatatgttttattatatacctagggcaaaaataaaacattaactATGTC
AATATAGTCAAACGATTCACTTAAAACACTCCCagaatcgaacgttcgaa
tgtttttcttttttcaatgattttattAATTACTTTGActtataaaattt
gtttatgaaattgacaatagatttattttaatgaatttctttgataacaa
caagagcaacaaaaaaactcaaactttgaaagcaaaatttgaaaaaaaaa
ttctaccgtggtataatagccatggtatatcaggaattattcaatggctg
tttttgcctacaatAAAAgttcttatttaattttttttgtctatCCCATA
CTATTAATTTTGTAAGTTTATTCAAAAGCAAGTTAAAATTGTAAACATTT
CCTCTGAGTTTAACCAAATTATCTTTCTTGttcatcaatttcaattttcg
atGAAAGAATTTTAATTGTCATTAAATCTGTGAAAACTTCCGACTTtatt
attcatagaattatatttcag Run BLAST on NCBI transcript from alignment at scaffold_409:39842..45792+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064131 ID=TCONS_00064131|Name=TCONS_00064131|organism=Clytia hemisphaerica|type=transcript|length=5951bp|location=Sequence derived from alignment at scaffold_409:39842..45792+ (Clytia hemisphaerica)
CCAGTTTCCACcgggaacgatattttggccaatttttccactgggaaggg
gtcccagtgggtctgtgagaagggggtgcatGCAATTCCACCATAATTTA
TCATTAGCCAAATCAAACCAATTATTGTCATTTAAAACATTAGCCTTTTT
CAAATTAGACAAACCCTTTTCTACGCAAATTTTGGGGCACCTTTAGGACG
TTTAGATATAAAACCCAACGAAAAAGCAGTTTGCGTAGCAAACGATCAAA
GCTAGTTCTTGCAATTAGCGTCGAGTAATATAGTAATATACCAGGTGGGT
CAAAAAAAAGTATTAAATTGctagaataaaaaacaaaataaacaatcttC
CATTGTGAAGGAATTTGGTTGAGCTGTAAgtgtaaaaaaagtttaaaatc
tgTGTAAGATCCTAATTTAAGTCTTGGGTATGAAGTTACAAATCGAAAGA
AGAATGATTTAATTAAGAAATTTACCATGTCCCTAGTAAAAACAATCACG
GAATGGATAATTcaccagaaaaatgaaaacacctACGCCTCCTTCGCTTG
ACATAATAGGAATTTGTCTTTCcgataaaaactttattttctaTCAACCA
AAAACTGTATGAACAACGTTTATCGATCGAACATTGTACTAGAACTTTTA
TAAACCCTGTTAGCTAAAGCTGTCACAAGCAACGAgtaaaagtaagtaag
tttgcaaccgcagtcgagggcgacccgaagactcccttttcgtatagcta
cccgaaggtaggggaaggcgccactcctttccctggatttctccacttac
ccttgatccttctctttagTTACTGGgaatcaagcagagaggcatcaagt
accattttgggaatctttggtatgacccgactggggatcgaacccacaat
cttgcgcaccgtagctggatgctctacatTCATGCTACGGTCGGAAAAGA
ACCTAGATGTTTATTCATGCATTAAGTTGTAACTTTCATTTAGGATCAAG
ACCTACTGATATTGCAGACTGGGCGACACAAGAGTTCACACCTACGCCAT
TAAGATACCAATTTTCAcccattgtcaatatatttcaagACAATTTCATC
GAAAAACGAAACATACAAAATTCAGATGGTCAGCCTGTTAATTCATTAAA
ACTTCGCCAGTGGTTTATGCCTCTATATGACAAATATTGTGAAGTGCTCG
GCTTCAAATGTTCCATGGCTAAAGGGTGCGGTTTTGATGACAATTGTCCA
GTTGATACAATATGTGAGGGTGAAGGTGAAACACATGAATGCGGTGGTAA
GCATTTTTTCTCagctgttttgtttttaagggttacttagactacacaat
atattggtgagCAATATTCGTCAATAAAAGTTAtggaccgtaatgtacgg
agTAAACAACAggtgctctattataaaaaggtaAACAATCCTCCTATATT
ATATTGTTGAAATATTGCATAAttaagctgacaatatattgcggataccg
tttcaatatattgccggcggtcagcaatatatcatcaaaatattgtctga
caatatattgtgtagtgtatgtagccctttataGAAACAGAAAAAGTGTA
ATTTTTTAtatcatggaggtaataaaagtatagatggagagtcaatgcct
ttctattctgatttatcatcggaagcaaacagctatttagttgctttggg
aataagatgattaattttgggtatacacgtgggaatatttaagataaaTG
GCAAgccattacatttttaacaagtatattgaaatataatagccctgtca
tgaaaaattgaaaaaacttcacataataagcaaaatactccaaacttcta
ggggaagctgcccataaagccatcgatagatttacaaaagaattacgtgt
tacgattaggaaccttgtatcaatcattttgtcagagtatgaaaaccgct
gcccacttagacgtgaagattttaagataagaaactttcgaTGATAAAGT
GATGCAACTttcaatgttaacaaaatgccagcccaaaaatgtgtccttat
gaaattaatatactcttttagtcttacatcagttgaaactatttcaaatt
gcattttaacaaggattttcggCAAGATtaggtttttcaaaatcaacaaa
acagtctctttctgttcttataaacttataaattgatgttttttgcttcc
aatgatggtacatcaaagtaAAGCCGCTTTGAATTCAAAGAGTATATAGA
TTTAtgaaagatttcaacgaccatttagatcactaccgagacgttttctc
tccctctatatctttattacctccatgttTATATGTAGTCCCTTTGAgaa
cccctgtgtcacagacccactgggaccccatccacactggaaaatttggc
aaaaatttctccggtggaaaaatatcctgaaatttcagctccactgggaa
attgactttgatttttatccccactgaagaaaaaagttccatcggTGCTG
TGAGACAGGTGTGTTTTTGCCAAACGTCATCAAAGTCATCCAGTATGTAA
TTATAAGTCGGAAAAAAATGCAGAATTCATTTTATTGGTCCAATCTGACG
TAAAAGATAAAGTTTAGTGTGATTCttgtatgtgttttttttgTCTTCAG
AATGGGGCGAATGGGGTTCATGGGCTTGTAGTGAATGTGGTGTTTCATTG
CAAAAGAAAAGAACACGCGAATGTACAGGGTGCAATGGAGAAGAAGAACA
AATTCAATACTCTGAAGATCCAACAGATTGCTGTAGTAAGCATAATTCAG
cctttaaagattttaaaatagcTGTACGTCTAGATGTGGTTTAGAAAGAG
TATTTTCCAGGGGAGTCTTCAAAAGTCCGACAGCTTTCTAGCCCGACAGA
AAATTCCGGCAATGCAACGTAAGGTTGCGCCAGTTTTTCAAAATCGATTC
CTGCCATTTTTTGCTGATtactttttttaatgaaaaagacACAGCACATT
TTCGGCAACATCTAATAGAcaatatcggcttaacgtgaaactcagatttg
atccccgaatattgcccacaatgctttgcgcggaaaaaagttcacggtga
aatcttttccgcacaaagcattgtgggcaatattcggggatcaaatctga
gttttcacgttaagccgatatcgtctattgtagAACGTTTTTGTAAGACT
CAAATAAGCTCATAAATGCTATGCTGATTGCCATCAATATTTtactaaaa
tgtcaaaagatGGATAGGTTTCTGACCCCCTGaaaagtatttttgaaaat
tatttcaattcaTTCTGTAAACTCAAGAAatattagtcatttaaaaaagg
aataaaccagctgcactggaaagtcagcccaaaAGGCTTAGAATGATTAA
GAcgaagcaaaaataaaaaactgagcacattttttttgcttggaacgTTC
AGACGAAAACTGCACAGCACAGTCGAATCCTGTCTTCAAGGAAATTTATT
CCCGAAAGATATAGTCCAAAGTTTATCACTGAACttgcaaaacaataaaa
aaaaagagcCCGTTTTCAAGTCAACCAGGGCAAGGTTTTAAGCTGCATTA
TTTGagtgaatgaatattttttgaatatttttttcgcatttatgacgttc
taagattaaagaatttatgatatgaaaatgaagattgtAGCATTATTCTA
CATGAAGTTGACTTTCTTCTACTTCGTTTTTCATCTtgtttcaccatttt
ttgaatttcttttttgataatattccactccaaaatatctttttgacaat
ttcaatttatggaagtgtatttctcaggtctattatATTTACAATTTAGA
TAAATGATAGAGTTTTTACAGATCGGCCCACACTGGCGTGGGCCTCTAAC
CCGCTCTTCTTATAATCATGTTGTTTCcgtcgtaaatttctttaaataga
gtTTAGTCTACCTCTCACTTTTCATATATGACTCTTGTCTTTTGCTttcg
atgttttttttcttttgctttatgaTGCCATTGTTTAATTATCTCGCgtt
ctttccttgaaaaatcgtctgaTACTCTGAAATCATCTTTATCTAACACA
GCGTATTTTGGTTTGttacattgggcttttccagaaatagtcctcAACCA
AAATATACTCAACCCCTTCGTTGGGGGTTGAGTATATTTttaaaagtgga
tatccaggggtctttactaataaagtgggatatccagggggttcgatact
tcgaaaaatcgaTATCCTCGACAgtgggggtaatttttttttctggaaaa
gcccatttacaAAGCGCATATAAATGTTATTTTGCTTTTACAGACGTTCT
ACACAAAGTGTATGTCCGAGTTGCATTgtacgaaaatactgatgctgGTA
GTAATTATGAACCCTACGGTGATATGAAGATCTCAATCGGTGATCGACCG
gagaatcaaaacaaacaagccTGGAATGTCGCAAGAAAAAATTGTCCAAG
CTTTAAGTTGAGCACTTGGTATTATGGACCTGATAAATATATTGAATTTT
ATGAACACTTTGATTTTCTTAAATCAGATGGTAATATCTTCAAGTTACAT
GGACATGCTTGGGAGGCTGATAATAATCCTGATGATCTGCTTGCAAAGTT
TGATGATTTTCAAGATGATGTGAAAAAATATCTTGATTATGACTGGCTCC
ACTTCAATGGTAAAGCTGGCCATGGTAAAGAAGAAGGTCAAGTAAAAATC
AAATTCTATAAAGTTTGAATTTGACTAAACTTTGAAAGAGGGAAATTAAT
CTAAAAGTTTTATcaaagaatttaattttttccaggCTATGAATTTAATG
TTTCATATTGGTCACATTTTTATTATTACCTGACCAGACATCGGTTTACT
GTTATGTAATATTTTGTATTATAACAGATATTTGTATGGCCTTTCATTAg
attattgagatttattaactgGAGGTGAGTGATATTCAATATCATTTACC
GAGTAATAAATCCAATATCTAAGGAAAGTTGACATGCAATATATGTTTTA
ATATATACCAAGAACCATTTCATCTATATTCCAACAAAAGCTAGTCAATC
ACAAGCGTTTTGGACTATATTTTAATTGAGGAACTAAAGCACaaataatt
ttccaaaactGACATTAAAATATCAGAAGCAACTCCATTGCTGGCGTGGT
ACTCAAGCGTGTAATAATTACCGTATCATTGCACAGTCATTGGCAATATG
GAGATTTATTTTAGAGGAAAAAAGCTTACTGGTATgtaataataagcaga
tattcaatggttaaaagttggttattgagatttattaacccgaggtgatg
taatattcaacgaggcgaagccgagttgaatatacatcaccgagggttaa
taaatccaatatccaacgaaaacctatttaatatatgttttattatatac
ctagggcaaaaataaaacattaactATGTCAATATAGTCAAACGATTCAC
TTAAAACACTCCCagaatcgaacgttcgaatgtttttcttttttcaatga
ttttattAATTACTTTGActtataaaatttgtttatgaaattgacaatag
atttattttaatgaatttctttgataacaacaagagcaacaaaaaaactc
aaactttgaaagcaaaatttgaaaaaaaaattctaccgtggtataatagc
catggtatatcaggaattattcaatggctgtttttgcctacaatAAAAgt
tcttatttaattttttttgtctatCCCATACTATTAATTTTGTAAGTTTA
TTCAAAAGCAAGTTAAAATTGTAAACATTTCCTCTGAGTTTAACCAAATT
ATCTTTCTTGttcatcaatttcaattttcgatGAAAGAATTTTAATTGTC
ATTAAATCTGTGAAAACTTCCGACTTtattattcatagaattatatttca
g
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064131-exon-scaffold_409-1491911889:39842..40216 | TCONS_00064131-exon-scaffold_409-1491911889:39842..40216 | Clytia hemisphaerica | exon |
| TCONS_00064131-exon-scaffold_409-1510915933:39842..40216 | TCONS_00064131-exon-scaffold_409-1510915933:39842..40216 | Clytia hemisphaerica | exon |
| TCONS_00064131-exon-scaffold_409-1575043694:39842..40216 | TCONS_00064131-exon-scaffold_409-1575043694:39842..40216 | Clytia hemisphaerica | exon |
| TCONS_00064131-exon-scaffold_409-1491911889:40835..41137 | TCONS_00064131-exon-scaffold_409-1491911889:40835..41137 | Clytia hemisphaerica | exon |
| TCONS_00064131-exon-scaffold_409-1510915933:40835..41137 | TCONS_00064131-exon-scaffold_409-1510915933:40835..41137 | Clytia hemisphaerica | exon |
| TCONS_00064131-exon-scaffold_409-1575043694:40835..41137 | TCONS_00064131-exon-scaffold_409-1575043694:40835..41137 | Clytia hemisphaerica | exon |
| TCONS_00064131-exon-scaffold_409-1491911889:42492..42626 | TCONS_00064131-exon-scaffold_409-1491911889:42492..42626 | Clytia hemisphaerica | exon |
| TCONS_00064131-exon-scaffold_409-1510915933:42492..42626 | TCONS_00064131-exon-scaffold_409-1510915933:42492..42626 | Clytia hemisphaerica | exon |
| TCONS_00064131-exon-scaffold_409-1575043694:42492..42626 | TCONS_00064131-exon-scaffold_409-1575043694:42492..42626 | Clytia hemisphaerica | exon |
| TCONS_00064131-exon-scaffold_409-1491911889:44185..45792 | TCONS_00064131-exon-scaffold_409-1491911889:44185..45792 | Clytia hemisphaerica | exon |
| TCONS_00064131-exon-scaffold_409-1510915933:44185..45792 | TCONS_00064131-exon-scaffold_409-1510915933:44185..45792 | Clytia hemisphaerica | exon |
| TCONS_00064131-exon-scaffold_409-1575043694:44185..45792 | TCONS_00064131-exon-scaffold_409-1575043694:44185..45792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_409 | supercontig | scaffold_409:39842..45792 + |
Blast
The following BLAST results are available for this feature:
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