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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064134 ID=TCONS_00064134|Name=TCONS_00064134|organism=Clytia hemisphaerica|type=transcript|length=1122bp
ttttgcacatagTACCAAAAGTGTTCCGCATCCTTGCGAGACATGTACAC
GCAAATTAATCAACCTTTTGTCACGCTGCGCGCCGtcatttaaattcatt
ttttagagTAATATAACACAAATTTAAAATGGCTGATGAAATTCAGAATG
TTATGGAAATTaccaaagaagaagaagagcaaaaaagcaaaaatgaaagt
gatgaaAATAAACCAAAGCTTTCACGTCATGAGAGTTTGAAAGAATTTCT
TGTAATGACGGATGAAAAAGGAGATAAAATAACTTTGGAGGATACTGGAA
TCGATGatttgatttccaaagaaacAGCTGAACTAACAGATAATGAACGA
ATGTTTCTATATGAAAAAGCAATGTCTTTTCGTGGCCTGGGAAGTAACAA
TCATGCTTTATTATGCTTTCTTGGTTGCCTGAAAGGCTTGAAACCATCCT
CAAAATCGAAATTTACAATGTTACCTCAATGTATGACTCATATTTCCGAG
ATTTACGCAACAGCTGGTGACTACCAAAGAGCTGTTGAATTTATGCAAGG
AACAAAACTTTATTATGAGACTGCTATTATTGAATCTGGTCTGCAAGTAG
ATAAATATAAAGAATTGTCCAGTGAGAATTATTCTCCTTTGGACTTTGAC
CCTTGTTTAGATGAAGCAAAGAGAGCAAATGAGTATGAACGTTTAGCAAA
CTCATGTTTAGagcaacaaaaatttcaactAGCTTTAGAATATTGTGGTA
AAGCGACTAAATTAAGACAGAAGGCTTATGGAGATGAACATCCGTTGACA
ATCAAGAGTTTAGATTTGTTTACCTTGATCTATGCTGAAATGGGGAAAAG
TCAATATTCCGAAGCAATGAATAAGGTTGGAGATATTGTGAAACAGTATA
AGATTGAATCGGAACAAGCTCAAAAGAAAGCTGTCCAGGCTGATGCCTCA
AGTGAGAAGGATAATAATGAAACAACAAAGAAAACTGAAGACAGtgATGA
TTCTACTGCTGCTGGGGACATTAATCTAGATGGAACGAAAGGAGATCAAG
ATAAGGACAATGACGAAAATAACATCGAAACTaatgatcaaaatgaaaaa
acagatggcaataaaaaacaac Run BLAST on NCBI transcript from alignment at scaffold_409:85827..88515+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064134 ID=TCONS_00064134|Name=TCONS_00064134|organism=Clytia hemisphaerica|type=transcript|length=2689bp|location=Sequence derived from alignment at scaffold_409:85827..88515+ (Clytia hemisphaerica)
ttttgcacatagTACCAAAAGTGTTCCGCATCCTTGCGAGACATGTACAC
GCAAATTAATCAACCTTTTGTCACGCTGCGCGCCGtcatttaaattcatt
ttttagagTAATATAACACAAATTTAAAATGGCTGATGAAATTCAGAATG
TTATGGAAATTaccaaagaagaagaagagcaaaaaagcaaaaatgaaagt
gatgaaAATAAACCAAAGCTTTCACGTCATGAGAGTTTGAAAGAATTTCT
TGTAATGACGGATGAAAAAGGAGATAAAATAACTTTGGAGGATACTGGAA
TCGATGatttgatttccaaagaaacAGCTGAACTAACAGATAATGAACGA
ATGTTTCTATATGAAAAAGCAATGTCTTTTCGTGGCCTGGGAAGTAACAA
TCATGCTTTATTATGCTTTCTTGGTTGCCTGAAAGGCTTGAAACCATCCT
CAAAATCGAAATTTACAATGTTACCTCAATGTATGACTCATATTTCCGAG
ATTTACGCAACAGCTGGTGACTACCAAAGAGCTGTTGAATTTATGCAAGG
AACAAAACTTTATTATGAGACTGCTATTATTGAATCTGGTCTGCAAGTAG
ATAAATATAAAGAATTGTCCAGTGAGAATTATTCTCCTTTGGACTTTGAC
CCTTGTTTAGATGAAGCAAAGAGAGCAAATGAGTATGAACGTTTAGCAAA
CTCATGTTTAGagcaacaaaaatttcaactAGCTTTAGAATATTGTGGTA
AAGCGACTAAATTAAGACAGAAGGCTTATGGAGATGAACATCCGTTGACA
ATCAAGAGTTTAGATTTGTTTACCTTGATCTATGCTGAAATGGGGAAAAG
TCAATATTCCGAAGCAATGAATAAGGTTGGAGATATTGTGAAACAGTATA
AGATTGAATCGGAACAAGCTCAAAAGAAAGCTGTCCAGGTATGAAACTTT
GTTTGTctataaaattgtattttttatacaatacaccttttcgaccgtag
ccgccaattgccgcgcgggaaTTTTTTTGGCCGTTTCACAACCCTAAAAC
ACCAccttcgcacctaaagacaatagaaaaaagtgtcaaaaaaggattag
gtcaagtttagggtggtaaattaaataataaagtggcaggcacctgaccg
cgcgactacggttgGTTGAATAATTGAATCTGCTACATGTTTCAATATCT
TACCactttctgtttattttgtttgtGCAAATTATATGGTATCAAAGCAA
AAACTACCcaaaaaatctaattcgaaatcATTGTATCTTATTGACTGGTA
AATTGTTAtgaagataaatattttttaatttttcacattttctaAACAGG
CTGATGCCTCAAGTGAGAAGGATAATAATGAAACAACAAAGAAAACTGAA
GACAGGTAAGCCTAGCCTGGTTAAGcaagccagtttttacaaggtCAAGA
TACGACTGAAGCAATATAGCATTATCGgcgctttaatgatttttatgatg
tacgaaattttaaatttgccctcagtcacaacttaccatcagcaGATTtt
accaagtgactgaatcaatctggattagatttctaggctaaggAAGCCCA
GGGGTACTGAAGCAAGTATAGTGCACCTGTGAGCGACAAGGGTAGTTTTT
AACCTTCTCAAGTCTGAAGTGATATTTCCCACTTTTGAGTTCTTTAAAGG
GTATTatacaaaaacaatgaaaattatgaatCTCTTAAATCTTTcggaaa
ttttctttcaaatttagtttttgtgtATCTGCAAATTGAGAACATTAACT
TAAAAATCCTATTAACTGGTTTCAGTATATTCTTTTCTAGCAACCAAGTT
GCTAAGACTCGAGTCCtgaaatttgtcatttttttcattttctcataaag
taaaagctttttaaataaTCTAAGACAAACGATAGCCCTTCACCCAATAA
AGTATAAATATGGTaataatatcaggggtggtccGAGCAGATTTTTCGGA
AAATGAACTAGAGTGCTAAGCAACCCTGACCCGAAAAGTAGAGttgctta
aaaaaaaagtgtacataTATCTTGTAAATCTGGAAAGGTCTGTATTGGCT
TTTGTTTTAGCTCATCTTGATAATTGTTGTAAATTTCAGGTGTCTATTTT
TGACACGATATTTTACGATGTCATAATGCTGTGATTattacgagaataaa
ataaagtaataaaatctTAACACACCATCGAATTTCTGAAAGTTGGAGTT
TTTAATTTCGGAAATAAATATCGGATTTTGATGAAGGCTTGGGGAcatga
gaagtttttttcgcgtttgtgcaatgcaacatgctccgtCCCaacaacct
gaaacgctttctcgtttctccaccccatttttcttatcagcgtgtctttt
gggtatttccctcactttttgtcccatgaaacaaaaaaagaaaccacttt
tttcttgtgtgggtgggatggagcatgctgcattgcaccaacgcgaaaaa
gacttctcgtgtccccaagccttaagacAATTCTTCtgaatattttattt
tacaattttagtgATGATTCTACTGCTGCTGGGGACATTAATCTAGATGG
AACGAAAGGAGATCAAGATAAGGACAATGACGAAAATAACATCGAAACTa
atgatcaaaatgaaaaaacagatggcaataaaaaacaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064134-exon-scaffold_409-1491911889:85827..86764 | TCONS_00064134-exon-scaffold_409-1491911889:85827..86764 | Clytia hemisphaerica | exon |
| TCONS_00064134-exon-scaffold_409-1510915933:85827..86764 | TCONS_00064134-exon-scaffold_409-1510915933:85827..86764 | Clytia hemisphaerica | exon |
| TCONS_00064134-exon-scaffold_409-1575043694:85827..86764 | TCONS_00064134-exon-scaffold_409-1575043694:85827..86764 | Clytia hemisphaerica | exon |
| TCONS_00064134-exon-scaffold_409-1491911889:87176..87231 | TCONS_00064134-exon-scaffold_409-1491911889:87176..87231 | Clytia hemisphaerica | exon |
| TCONS_00064134-exon-scaffold_409-1510915933:87176..87231 | TCONS_00064134-exon-scaffold_409-1510915933:87176..87231 | Clytia hemisphaerica | exon |
| TCONS_00064134-exon-scaffold_409-1575043694:87176..87231 | TCONS_00064134-exon-scaffold_409-1575043694:87176..87231 | Clytia hemisphaerica | exon |
| TCONS_00064134-exon-scaffold_409-1491911889:88388..88515 | TCONS_00064134-exon-scaffold_409-1491911889:88388..88515 | Clytia hemisphaerica | exon |
| TCONS_00064134-exon-scaffold_409-1510915933:88388..88515 | TCONS_00064134-exon-scaffold_409-1510915933:88388..88515 | Clytia hemisphaerica | exon |
| TCONS_00064134-exon-scaffold_409-1575043694:88388..88515 | TCONS_00064134-exon-scaffold_409-1575043694:88388..88515 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_409 | supercontig | scaffold_409:85827..88515 + |
Blast
The following BLAST results are available for this feature:
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