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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064204 ID=TCONS_00064204|Name=TCONS_00064204|organism=Clytia hemisphaerica|type=transcript|length=1679bp
atttcttataaaaaataaaaattgtaaatttatttgcAAGGCTGGTCAAA
GTAAAATTCCAACCAATTTCACTTAAAATCGTTGTTTTTGTCTTCTGTAT
ATAGATCAGCGTCTCAAGTCAAAACGTTGTTCCGCAAGTTATTCGCCGGC
AGAAAGGAACGCTACCTCCTGGTTTGAAAGTTCTCGGAAGACAAACTCTA
CCACGTGTCACTAACGCACCGGTTTTCACCACACCAAAACCAGGGCCTGG
TCGTGAATGCAAGCAAGGAGCTGATCCAATTACTAAAAAATGTCCGCCGC
CACCTGATAACGCATTTCGTTTCTTTGGAAGGAAAGTTTACAAACCACGA
AAGGTGAATTCAACGACTCTTACCGCCAAGAAATTGTTTGGGCGTATTGC
CGGGCGgttttggaaaatgaacttgagTATGTTAAGGAATCAACAACGTA
GTCAGAATTTAAAGTAAACAAAGAGATGAATAATTCAGTGATAGTAACAA
GACATAACGAACCAGCCGGTAAATTGATAAGCTGGCGTCCAGATGCCCCA
AGATGTGTTGGTCGCCCTTATGTTACTCTGAAGTCGATTATTGAAGAGGA
AACTGGTTTTGCCGGTAAAGATTTGTTGACATCCATGTTAGATCgaaaaa
aatggaaagaaaacTTTGGTAATGCTTCACCACACGGATGAATCAAGGCA
AGGCGAGGTAAGTAACAAGAGAAAGCGGCGGATAACATACCCTCACTTCT
AGTGGAGCTGGGATATGAATGGCTGATATTGTTGTTATATCTGGCACCTC
GAAAAGATCTACAATGAATTAGTACGTGGCAAAATCGCTTGAAACGTTTA
AAAAACTGTTGGTTGTTAACACTGGTTTCAAAGCTGGCTACTGCATGTTA
GAATTCATTGCGGTAGGTCTATTTTTTATATCTGTTGgtttttttgattg
attgaataTAATTAGACTCTATTCGATATTTAAAGAAATCACGAACCAAT
TTAAGTATAATCAATATACATATGGGGCAATGTATAATTCTTGTATGGGT
CCGCCTGTAGGCGTGTAAATTCCTTGCTATAAATAGTCTTTTTACAACAG
TTTATAGACTTTGCTCAACATTTTTATCTCGGAATTATCATAGAACACAA
GGAAATATAACGTTGATCAGAGGCTATTCCCTAAAAATACATGAGTTCCA
AAGCTTTTttacacctccttctcacagacccagtagggtATACTAGGATA
TATCCGGGGTGATATTTTGGacgatttttccagtgggaagggttcccagt
gggtttttgagaagggggtgtgttcTTAGCTCTGATATTAGTGCATATTG
TTGTGAAAAGAGAGCAGAAAGGGTATAGTTTTTATTCTGCTGAACTCCAG
tcccaaaatatttgatttttttaaaacccCTTCTGACAATCCATCTGATT
GGATTCGCTTTCACTTTGCACGCCTTTCATGGTAAATTCTGACCTTGGTT
GTTCAAATTGCCTTAGTCATTAGCCTCAGATTGTATTGCTCTTATCAAGG
GGAGCTGTTATTCTTTGATCTCGGTTATCATTTAACTTTGTACTAAATAT
TATTTATGttgtaaatattgaaaatctaaagaaattttatttgtgctata
attttagattttttttggtaaatttgtAN Run BLAST on NCBI transcript from alignment at scaffold_41:357919..359808- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064204 ID=TCONS_00064204|Name=TCONS_00064204|organism=Clytia hemisphaerica|type=transcript|length=1890bp|location=Sequence derived from alignment at scaffold_41:357919..359808- (Clytia hemisphaerica)
ATTTCTTATAAAAAATAAAAATTGTAAATTTATTTGCAAGGCTGGTCAAA
GTAAAATTCCAACCAATTTCACTTAAAATCGTTGTTTTTGTCTTCTGTAT
ATAGGTAAACCTCAAAAATTTTTTGAATTTTCAAACCACAATTTGAAATT
TGCTAAGACAGGTTGATCATCACTACCTAGGCTCATTAGGAAAAACGAAG
AGGACCAAGCTTGCCGTCAAATAATTTTTGAATGAATAAGATAATTTATC
TAATGGTTGGATTTTATACCACACTCATCTCAATTTTGCTGACAATGCTT
AATCTTCTTTTCCAGATCAGCGTCTCAAGTCAAAACGTTGTTCCGCAAGT
TATTCGCCGGCAGAAAGGAACGCTACCTCCTGGTTTGAAAGTTCTCGGAA
GACAAACTCTACCACGTGTCACTAACGCACCGGTTTTCACCACACCAAAA
CCAGGGCCTGGTCGTGAATGCAAGCAAGGAGCTGATCCAATTACTAAAAA
ATGTCCGCCGCCACCTGATAACGCATTTCGTTTCTTTGGAAGGAAAGTTT
ACAAACCACGAAAGGTGAATTCAACGACTCTTACCGCCAAGAAATTGTTT
GGGCGTATTGCCGGGCGGTTTTGGAAAATGAACTTGAGTATGTTAAGGAA
TCAACAACGTAGTCAGAATTTAAAGTAAACAAAGAGATGAATAATTCAGT
GATAGTAACAAGACATAACGAACCAGCCGGTAAATTGATAAGCTGGCGTC
CAGATGCCCCAAGATGTGTTGGTCGCCCTTATGTTACTCTGAAGTCGATT
ATTGAAGAGGAAACTGGTTTTGCCGGTAAAGATTTGTTGACATCCATGTT
AGATCGAAAAAAATGGAAAGAAAACTTTGGTAATGCTTCACCACACGGAT
GAATCAAGGCAAGGCGAGGTAAGTAACAAGAGAAAGCGGCGGATAACATA
CCCTCACTTCTAGTGGAGCTGGGATATGAATGGCTGATATTGTTGTTATA
TCTGGCACCTCGAAAAGATCTACAATGAATTAGTACGTGGCAAAATCGCT
TGAAACGTTTAAAAAACTGTTGGTTGTTAACACTGGTTTCAAAGCTGGCT
ACTGCATGTTAGAATTCATTGCGGTAGGTCTATTTTTTATATCTGTTGGT
TTTTTTGATTGATTGAATATAATTAGACTCTATTCGATATTTAAAGAAAT
CACGAACCAATTTAAGTATAATCAATATACATATGGGGCAATGTATAATT
CTTGTATGGGTCCGCCTGTAGGCGTGTAAATTCCTTGCTATAAATAGTCT
TTTTACAACAGTTTATAGACTTTGCTCAACATTTTTATCTCGGAATTATC
ATAGAACACAAGGAAATATAACGTTGATCAGAGGCTATTCCCTAAAAATA
CATGAGTTCCAAAGCTTTTTTACACCTCCTTCTCACAGACCCAGTAGGGT
ATACTAGGATATATCCGGGGTGATATTTTGGACGATTTTTCCAGTGGGAA
GGGTTCCCAGTGGGTTTTTGAGAAGGGGGTGTGTTCTTAGCTCTGATATT
AGTGCATATTGTTGTGAAAAGAGAGCAGAAAGGGTATAGTTTTTATTCTG
CTGAACTCCAGTCCCAAAATATTTGATTTTTTTAAAACCCCTTCTGACAA
TCCATCTGATTGGATTCGCTTTCACTTTGCACGCCTTTCATGGTAAATTC
TGACCTTGGTTGTTCAAATTGCCTTAGTCATTAGCCTCAGATTGTATTGC
TCTTATCAAGGGGAGCTGTTATTCTTTGATCTCGGTTATCATTTAACTTT
GTACTAAATATTATTTATGTTGTAAATATTGAAAATCTAAAGAAATTTTA
TTTGTGCTATAATTTTAGATTTTTTTTGGTAAATTTGTAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064204-exon-scaffold_41-1575043694:359705..359808 | TCONS_00064204-exon-scaffold_41-1575043694:359705..359808 | Clytia hemisphaerica | exon |
| TCONS_00064204-exon-scaffold_41-1575043694:357919..359493 | TCONS_00064204-exon-scaffold_41-1575043694:357919..359493 | Clytia hemisphaerica | exon |
| TCONS_00064204-exon-scaffold_41-1510915933:359705..359808 | TCONS_00064204-exon-scaffold_41-1510915933:359705..359808 | Clytia hemisphaerica | exon |
| TCONS_00064204-exon-scaffold_41-1510915933:357919..359493 | TCONS_00064204-exon-scaffold_41-1510915933:357919..359493 | Clytia hemisphaerica | exon |
| TCONS_00064204-exon-scaffold_41-1491911889:359705..359808 | TCONS_00064204-exon-scaffold_41-1491911889:359705..359808 | Clytia hemisphaerica | exon |
| TCONS_00064204-exon-scaffold_41-1491911889:357919..359493 | TCONS_00064204-exon-scaffold_41-1491911889:357919..359493 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:357919..359808 - |
Blast
The following BLAST results are available for this feature:
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