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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064186 ID=TCONS_00064186|Name=TCONS_00064186|organism=Clytia hemisphaerica|type=transcript|length=3448bpRun BLAST on NCBI protein sequence of TCONS_00064186-protein >TCONS_00064186-protein ID=TCONS_00064186-protein|Name=TCONS_00064186-protein|organism=Clytia hemisphaerica|type=polypeptide|length=585bp MASFRWLLLVNLWILLAYVNLHVLNYDSVTVCDGVLKEIQCPSEENIHVLRun BLAST on NCBI transcript from alignment at scaffold_41:655924..670458+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064186 ID=TCONS_00064186|Name=TCONS_00064186|organism=Clytia hemisphaerica|type=transcript|length=14535bp|location=Sequence derived from alignment at scaffold_41:655924..670458+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_41:655924..670458+ >TCONS_00064186 ID=TCONS_00064186|Name=TCONS_00064186|organism=Clytia hemisphaerica|type=CDS|length=10548bp|location=Sequence derived from alignment at scaffold_41:655924..670458+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064186 vs. Swiss-Prot (Human)
Match: AQP2 (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.696e-24 Identity = 71/234 (30.34%), Postives = 110/234 (47.01%), Query Frame = 1
Query: 1951 QLRSILLWRCVIAELLASSLYCFFATQMLFRLSRTLDKNIIVVQTQSTALSLGFLVMVLSHGFGVSHNAFIFPSITFGKCLMKKTGFLSSLLYFLFQMIGGVIGVALDHVINSRQLNAGEIFPRLN--VTIGIGCVIEGILSLLFVLAVLSTHEKESGRYQITPSLVFGFGVAASFVMGHHQTGAILNPSIVFGVGIVHNHWPQFVWIYWVGPLIGGMLGGFLYVFLLYPPTEK 2646
+LRSI R V AE LA+ L+ FF + L + + + L +G LV L H G A I P++T + L + Y Q++G V G AL H I + L+ T G +E L+L VL + ++ ++ G TP+L GF VA ++G H TG +NP+ +V + W++W+GPL+G +LG LY ++L+PP +
Sbjct: 3 ELRSIAFSRAVFAEFLATLLFVFFGLGSALNWPQALPSVLQI--AMAFGLGIGTLVQALGHISG----AHINPAVTVACLVGCHVSVLRAAFYVAAQLLGAVAGAALLHEITPADIRGDLAVNALSNSTTAGQAVTVELFLTLQLVLCIFASTDERRGENPGTPALSIGFSVALGHLLGIHYTGCSMNPARSLAPAVVTGKFDDH-WVFWIGPLVGAILGSLLYNYVLFPPAKS 229 The following BLAST results are available for this feature:
BLAST of TCONS_00064186 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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