|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064191 ID=TCONS_00064191|Name=TCONS_00064191|organism=Clytia hemisphaerica|type=transcript|length=553bp
gggggggtcctaataagatccgggggattggaaaattttcgaaaaattaa
caagcggggggggggcgtttatttggaacctaagagtacatttCTGacca
caaaaaaaattgattggtCGAGGATGTGCAGATTTCCCTGATCTAAGGAA
ACTCAGGGCCCAGGCCATGATTTGAAAATTAGAGGAGTCAGAAATATAAC
GACTAAAGAGGCGCAACCGTAGAAAATTGCGAATGTGATCTTAAAATAGC
CCTATTTCAGTCTGATTTTGTCCAGAAATAAAGCTATTGAAGTATAAATt
gtgaaatcttaaaaatccccacctttttatttgaaaaaaaagatagGTGC
CATTTCCCCTCCTGGCACCCGAATGGCCTTGGCCCTGAAATGTGCTGGTT
AAACAGGCCTGCAGTAAAGTCGTTTCTAGTAATTATTAtgaatcaaattt
caaaattttcgtacCTTTTCTAATAGTTCAACCTTATCATATAGATTCGT
ACGCATCCTTTCGTCGGATTTGATGATAAGTGAAAGCAAATCCATCCTAT
TAA Run BLAST on NCBI transcript from alignment at scaffold_41:820424..825663+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064191 ID=TCONS_00064191|Name=TCONS_00064191|organism=Clytia hemisphaerica|type=transcript|length=5240bp|location=Sequence derived from alignment at scaffold_41:820424..825663+ (Clytia hemisphaerica)
gggggggtcctaataagatccgggggattggaaaattttcgaaaaattaa
caagcggggggggggcgtttatttggaacctaagagtacatttCTGacca
caaaaaaaattgattggtCGAGGATGTGCAGATTTCCCTGATCTAAGGAA
ACTCAGGGCCCAGGCCATGATTTGAAAATTAGAGGAGTCAGAAATATAAC
GACTAAAGAGGCGCAACCGTAGAAAATTGCGAATGTGATCTTAAAATAGC
CCTATTTCAGTCTGATTTTGTCCAGAAATAAAGCTATTGAAGTATAAATt
gtgaaatcttaaaaatccccacctttttatttgaaaaaaaagataggTGC
CATTTCCCCTCCTGGCACCAGAATGGCCTTGGCCCTGAAATGTGCTGGTT
AAACAGGCCTGCAGTAAAGTCGTTTCTAGTAATTATTAttaatcaaattt
caaaattttcgtacCTTTTCTAATAGTTCAACCTTTTCATATAGATTCGT
ACGCATCCTTTCGTCGGATTTGATGATAAGTGAAAGCAAATCCATCCTAT
TAAAAAtgaacgaaaaatattttaaaatttatccatAGTAATTCAAGGAT
TTCTCAAAAAGATTTCCGTACAGCCAAAAAAGACATTGTCCATAAAGTCC
GAATCTTCTCACGAAAATATTTGTAGATAATGATGATTAACAAACCAAAA
TAATGCTACTGCAATCTCGGACAAAAGgttgaaaacttttcaaatgcatg
aaaaatttcaaaataagctctgaaaacccatttttaccaGGGCCtatgtt
gtttttattggatttggagAGTTTGGGTGACAATTCCAGAAGCCAAATCA
CTGGACATTGAAGGAAATGAATTTTTGCAAAGTCTTCAGGCtattttttt
tgtctgagaTTGAAGACTGAAGGTTCAATGAGTTTTgctcttcaactttt
tcgagaAGACATCTATTAGAAGATATTTGAGATGGTTTTCTagcttattt
taggcagtgTCTTCATTCTGAGTCAGATAAATTAAAGCTATTTTTTTACA
CAACGATATCTtgcaaacaagtgaaagatcgaaagttgtttcgagatgtg
acctcacattctattgcttttgtaaCCAAAAGAATGgcaaagttgatttc
gagcaaatttacagtcgaatgttttgattataagatagaaaactttctat
ttattataaaacataaaaacattcaaagagtatcagtaaaagCTGGTAAA
AGTccctttgttttttcattttttcaaaacctttttctaatcttgtcgca
cttgtttttactacatcagcatcatcagacctttcaatcaaaacaaaacc
tttaatcaaTTATAAACAACTGTTTAAAGCTCTCTGGTGCACCAACGACC
TATGTGGCTCAAGTTCATCCATTTTCAGTCATTGGAAGTCCAAAATTCAC
AAGGACTAAAATTATGAGGATTGCTAGCAAGCTTCTAGGTGTTTTCTGCC
AAATAACCACTTGTGGTCCATTTGGGGAATACATATGGTGTGAAGAAaga
agaatttctgtccaactatattcactcaggagatttgggtgacagagcag
catatgcatttccttattaggactcgtcagcactacATGCTGCACCCTGG
CTGGCTAGGTCGATTTAGCCACCATGCTAAACCACAAAAGCACTTGTGGT
TCCAACTGAGAAAATTAGTGGACAgcagggaaattcccttattaaATTAT
TTGGGTGATTTGGGTGGCaaagcagcatatgcatttcgtccttattagga
cttaTATATATAATAAGGGTTACATATCTTaagaatctttcaaaaaattc
cgCACAAGTTTTAAGTTATTTGGACTCTGTTCAGATTTGTAAATGAACGA
TCcatccaaaaagttttgaaaaatacctccACAAGGACATAACAAAGCAC
CGAATATAGGATCGATGGGTAAATgatctgtgtcaatccaatctGAAATG
ACTTTACCACATAATAGTTGCTGTCGTGTGCcccaaaaatcttcgttttt
caaaacCTCTGAAAGAactgaaaaatataatatacGTTTATGACTTTTAC
AAGAACGTCAAGACCCTAAAGATGTTCTCTTTTTCAGCATTTGTTTCATC
ATCATCAGATCTTTAGAGCGTATATTATATTCAAAGCCTTGTTtgagtgt
gtcccaaaaaagagTGAACAAATCTGTAAAGTATGTAAAGTGCTGAAAAC
TCATCATCTCACAGTAACTGGGGTTAGAACGCGATGGAAGTAAGATTACA
ATTAGATGTTGAATCAATAGATATTCATTTCCtaagatgattgaataggt
ttttgaaattggaatattttcaatctttaaagtATATATGGCATATTACT
TTATCTAAAAACATTTTGGGACACGCtgtattttaccttttctttcATGG
tatattttctcaaattcttcACTATCTTTAAGTAATCTTTCATAACATTC
TTCAGtcgtttctttctttaaacATCTCTTGGTGGCCACCAAACGTAACA
CTGAACAATATTCTTCGTCTTTGATGGTAAATTGTAATGGATCTTTATAT
TTACGAATGACACGATCCAATAAGGAGAGATATACACCAAGATTTAACAC
GGTTTCACTTCCATCAGTTTCGTCACTCTGTTGTTGTAAGGAGCAAAAGA
TAATGATGTCAATAATTAAATGCATTTAGTAAGGGACAAACCTTTAGGAT
CCGTGGCATTTTTTATGCGACGCAGTCAAACCTGGTCCATTATTTCaaag
aatgaagtatttaaaaagttttttggaagAGGGTTTCCTTAAGTAAATCA
TCGACTGGAAAAGACGTTAAAACGAAAAGTTGGcgttaattttcttgaaa
taggTTAATCTCCACTCAAAAGTCCTCTATAGCATTTTGAGAGCTTTAGA
CTGGTATAAATGGTTTTGGGTTTGATTGACTCAACCAGGAAAGACTGGGT
GTTTGCCAgtcaatttgaatttgaataatACTAGTGGAAAACCTCTGGGC
TATTTTGCGTgattccgtataaaacattacgtaatgaatataagtccagg
atccaaaagttcaaaaatagtccagtagggcttgaaatctagcctagaaa
ccaatacatccctcccagatcgaaataatcgttgCAATCAAGTTAAAGGc
ccaaaattgacattctcgttcgaacttcaattttcgaaaaatggtaaatt
agccaaaagtgccaatatgttatggcactgattgtagagtCGGGGTCTAG
AGCGAAAAGTGGTGGTAAATTTactatactcttaggttccaaataaacgc
cccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNgaacctaagagtacatttCTGAccacaaaaaaatttga
tttcgtAGAGGATGTACAGATTTCCCTGATCTAAGGAAACTCAGGGTCCA
GGCCATGATATGAAAATTAGAGGAGTCAGAAATATAACGACTGAAGAGGC
GCAACCGTAGAAAATTGCGAATGTGATCTTAAAATAGCCCTATTTCAGTC
TGATTTTGTCCAGAAATAAAGCTATTGAAGTATAAATtgtgaaatcttaa
aaatccccacctttttatttgaaaaaaagatagGTGCCATTTCCCCTCCT
GGCACCCGAATGGCCTTGGCCCTGAAATGTGCTGGTTAAACAGGCCTGCA
GTAAAGTCGTTTCTAGTAATTATTAtgaatcaaatttcaaaattttcgta
cCTTTTCTAATAGTTCAACCTTATCATATAGATTCGTACGCATCCTTTCG
TCGGATTTGATGATAAGTGAAAGCAAATCCATCCTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064191-exon-scaffold_41-1491911889:820424..820769 | TCONS_00064191-exon-scaffold_41-1491911889:820424..820769 | Clytia hemisphaerica | exon |
| TCONS_00064191-exon-scaffold_41-1510915933:820424..820769 | TCONS_00064191-exon-scaffold_41-1510915933:820424..820769 | Clytia hemisphaerica | exon |
| TCONS_00064191-exon-scaffold_41-1575043694:820424..820769 | TCONS_00064191-exon-scaffold_41-1575043694:820424..820769 | Clytia hemisphaerica | exon |
| TCONS_00064191-exon-scaffold_41-1491911889:825457..825663 | TCONS_00064191-exon-scaffold_41-1491911889:825457..825663 | Clytia hemisphaerica | exon |
| TCONS_00064191-exon-scaffold_41-1510915933:825457..825663 | TCONS_00064191-exon-scaffold_41-1510915933:825457..825663 | Clytia hemisphaerica | exon |
| TCONS_00064191-exon-scaffold_41-1575043694:825457..825663 | TCONS_00064191-exon-scaffold_41-1575043694:825457..825663 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:820424..825663 + |
Blast
The following BLAST results are available for this feature:
|
