|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064291 ID=TCONS_00064291|Name=TCONS_00064291|organism=Clytia hemisphaerica|type=transcript|length=1616bp
GTGTTTTATCAAGTGTGATCAATGGATTGCGGTTCGGTAACCTAATTTTG
CAACAAACATTTTATGTCAGTATGTAATTGACATAAAAGGGTGaaacagg
gggggggcacgcagctactacaagacatgatgtgtagtaagtgctttttc
aacactttttacTACActttggtagtaactgttttcagaaaagatttcca
ggtaccacccctgtttttgagtgatatcatcaaaaacatgctcgaaatta
ccctaaattgcgattatttctcaacctaaagccatttttgtgctagattt
tcttttaattaacTTGGTTAatagctgttgagaacattttaatgataatt
agggaaagcataatttcaaagttgggtgagaaaaattcattttgtgtgaa
aaattttaaaagttcttcaaaaagaattaaaatataagcacttactacac
caaaagtgtttgttttagtgtttggcaccacccccaaacagcagttacta
cactgtgtagtaactgttttcataacttctgaatacagtaccaccacggt
agtaagtgtcatactgtcttgtagtaactgcgtgccccccctggGGTGAA
ATTATGTATTCCAAATAATTGCTTTGACTCTCAAGATTCTGAAACCCCTT
TTAGGTGGAGCTTAAAAAAGAATCAAGaatgaatcaaaaattgaagaagt
tAACATTAATAATGATTGTGAAACAAGCTGAAAGACAAGTGCTTTTAGGT
ATGAAGAAAAGAGGGTTTGGTGAGGGCTGGTGGAATGGCTTTGGCGGGAA
GGTACAGGAAGGAGAGTCCATTGCAGAATGTGCTAAACGGGAAACTCAAG
AAGAGTGTGGGCTAGTCATGGAAGAGTATTATCAAATCGGACACATGTTA
TTTGAGTTTGTTGGTGATCCAGTGTTATTAGATGTGACTGTGTTCAGATG
TGATAATTACTCAGGAACAGTGACTGAATCAGAAGAAATGAGACCGAAAT
GGTTCAGCTTTGATGATGTACCTTTTGATAAGATGTGGCCTGATGATAAA
CTATGGTATCCACTCCTATTTAAAAACCAGAAATTTAAAGCTGATTATTT
ATTTGAAGGACATCACaagattttgagagaaaatattGTGCACGTCGATC
AATTTAATTAGTAGGTAATTATAACTAATATTAAGATTctttttgaaagc
aaaatttgcacattttattttgttgtttttaataaACATATTTTCACTAG
TGTGCTTCTCAAATCTCACTAAGGTAACCAATAAAGGTTTTCCATGACCT
TTTGCTTGCCAGGTGATGGCTCTCCTAACCACATCATCAATTCATTGAAA
GAATTGGCAAGAACAGCAAAATCTTTTTGCTGGTTAATACAAACAGTATT
TTTGCACTTAGTATCATTTTAAGGAATCTTTTATGAACATAGTATCTGCT
GCTATTTGCTTGCacaatatttttaaacaaaaatgtgCGGACAcgaattt
tgagaaattcttttgttgattCTTCTTTATCATAATAAGAGGCGAACTTT
GcttcaaaaaattatatatttaaaGGGTTTTTAGTTTATGCACAGCACTT
GTTATTTATTTTGCTT Run BLAST on NCBI transcript from alignment at scaffold_410:8884..10499+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064291 ID=TCONS_00064291|Name=TCONS_00064291|organism=Clytia hemisphaerica|type=transcript|length=1616bp|location=Sequence derived from alignment at scaffold_410:8884..10499+ (Clytia hemisphaerica)
GTGTTTTATCAAGTGTGATCAATGGATTGCGGTTCGGTAACCTAATTTTG
CAACAAACATTTTATGTCAGTATGTAATTGACATAAAAGGGTGaaacagg
gggggggcacgcagctactacaagacatgatgtgtagtaagtgctttttc
aacactttttacTACActttggtagtaactgttttcagaaaagatttcca
ggtaccacccctgtttttgagtgatatcatcaaaaacatgctcgaaatta
ccctaaattgcgattatttctcaacctaaagccatttttgtgctagattt
tcttttaattaacTTGGTTAatagctgttgagaacattttaatgataatt
agggaaagcataatttcaaagttgggtgagaaaaattcattttgtgtgaa
aaattttaaaagttcttcaaaaagaattaaaatataagcacttactacac
caaaagtgtttgttttagtgtttggcaccacccccaaacagcagttacta
cactgtgtagtaactgttttcataacttctgaatacagtaccaccacggt
agtaagtgtcatactgtcttgtagtaactgcgtgccccccctggGGTGAA
ATTATGTATTCCAAATAATTGCTTTGACTCTCAAGATTCTGAAACCCCTT
TTAGGTGGAGCTTAAAAAAGAATCAAGaatgaatcaaaaattgaagaagt
tAACATTAATAATGATTGTGAAACAAGCTGAAAGACAAGTGCTTTTAGGT
ATGAAGAAAAGAGGGTTTGGTGAGGGCTGGTGGAATGGCTTTGGCGGGAA
GGTACAGGAAGGAGAGTCCATTGCAGAATGTGCTAAACGGGAAACTCAAG
AAGAGTGTGGGCTAGTCATGGAAGAGTATTATCAAATCGGACACATGTTA
TTTGAGTTTGTTGGTGATCCAGTGTTATTAGATGTGACTGTGTTCAGATG
TGATAATTACTCAGGAACAGTGACTGAATCAGAAGAAATGAGACCGAAAT
GGTTCAGCTTTGATGATGTACCTTTTGATAAGATGTGGCCTGATGATAAA
CTATGGTATCCACTCCTATTTAAAAACCAGAAATTTAAAGCTGATTATTT
ATTTGAAGGACATCACaagattttgagagaaaatattGTGCACGTCGATC
AATTTAATTAGTAGGTAATTATAACTAATATTAAGATTctttttgaaagc
aaaatttgcacattttattttgttgtttttaataaACATATTTTCACTAG
TGTGCTTCTCAAATCTCACTAAGGTAACCAATAAAGGTTTTCCATGACCT
TTTGCTTGCCAGGTGATGGCTCTCCTAACCACATCATCAATTCATTGAAA
GAATTGGCAAGAACAGCAAAATCTTTTTGCTGGTTAATACAAACAGTATT
TTTGCACTTAGTATCATTTTAAGGAATCTTTTATGAACATAGTATCTGCT
GCTATTTGCTTGCacaatatttttaaacaaaaatgtgCGGACAcgaattt
tgagaaattcttttgttgattCTTCTTTATCATAATAAGAGGCGAACTTT
GcttcaaaaaattatatatttaaaGGGTTTTTAGTTTATGCACAGCACTT
GTTATTTATTTTGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064291-exon-scaffold_410-1491911889:8884..10499 | TCONS_00064291-exon-scaffold_410-1491911889:8884..10499 | Clytia hemisphaerica | exon |
| TCONS_00064291-exon-scaffold_410-1510915933:8884..10499 | TCONS_00064291-exon-scaffold_410-1510915933:8884..10499 | Clytia hemisphaerica | exon |
| TCONS_00064291-exon-scaffold_410-1575043694:8884..10499 | TCONS_00064291-exon-scaffold_410-1575043694:8884..10499 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_410 | supercontig | scaffold_410:8884..10499 + |
Blast
BLAST of TCONS_00064291 vs. Swiss-Prot (Human)
Match: 8ODP (7,8-dihydro-8-oxoguanine triphosphatase OS=Homo sapiens GN=NUDT1 PE=1 SV=3) HSP 1 Score: 141.354 bits (355), Expect = 1.364e-38 Identity = 80/152 (52.63%), Postives = 106/152 (69.74%), Query Frame = 1
Query: 694 KKLTLIMIVKQAERQVLLGMKKRXXXXXXXXXXXXKVQEGESIAECAKRETQEECGLVMEEYYQIGHMLFEFVGDPVLLDVTVFRCDNYSGTVTESEEMRPKWFSFDDVPFDKMWPDDKLWYPLLFKNQKFKADYLFEGHHKILRENIVHVD 1149
+L +++V Q +R VLLGMKKRGFG G WNGFGGKVQEGE+I + A+RE QEE GL ++ +++G ++FEFVG+P L+DV VF D+ GT ES+EMRP WF D +PF MWPDD W+PLL + +KF + F+G IL + VD
Sbjct: 45 SRLYTLVLVLQPQR-VLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVD 195
The following BLAST results are available for this feature:
|
