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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064336 ID=TCONS_00064336|Name=TCONS_00064336|organism=Clytia hemisphaerica|type=transcript|length=252bp
aaaaaattataaattattcCCCGAATTTTCCcgatttcgatttcgatttc
aaTCAAGATGGCGGCCCAGAATGGAGGAGCTCGACGAGTTTTCGTTGTAG
GAGTTGGAATGACTAAGttTGAAAAGCCAGGCAGACGAGATGACTTCGAC
TATCCAGATATGGCTAAAGAATGTGTGACCAAAGCCCTTGAAGACGCTGG
GATATCTTACACAGAAATCCAACAAGCTACTGTCGGCTATTGTTACGGTA
TG Run BLAST on NCBI transcript from alignment at scaffold_411:51024..57890- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064336 ID=TCONS_00064336|Name=TCONS_00064336|organism=Clytia hemisphaerica|type=transcript|length=6867bp|location=Sequence derived from alignment at scaffold_411:51024..57890- (Clytia hemisphaerica)
AAAAAATTATAAATTATTCCCCGAATTTTCCCGATTTCGATTTCGATTTC
AATCAAGATGGCGGCCCAGAATGGAGGAGCTCGACGAGTTTTCGTTGTAG
GAGTTGGAATGACTAAGGTAATTAGCTCTTTTACACCATGATTTTCTACT
ATTGGTGCTAACTACTGCTTGGGAAGGGTCACACAAAACAAATGATATGC
ATATATTGGACTTTGTACCAGAGCATTTGCCATGCCCCTTGCCTTGCGAA
ATCACTATTTTATTTTGGTAGCTCTAAACACTAAAGCTCCACTGGCACTG
CTGTTCCCCTCAGGCAAAATCAGTCAGGGAAATCCCTCAATTGCAGTAGT
AATTTTTTACTGCAATTGCGGTATAAATGTCACTTTCGCATTTTTCATAT
ACCGCAATTGCAGTTATATTCAAAAAACAGAATTCAAGATTCAAGGCACG
TGCGTTTGGTTTGGGAACGCGAAACACGAACGCAAACTACTTATGTCTAA
ACTTTTCAATATATCTCCAGAACTAACAAATTTTTTGAAATTCTGTAAAA
AGGTCTAAGTTCCTGAATAGTTTTACTATGTTCTATGAAAATATCATAAG
CATCAGTCAAATACTCGTTCATCTATTTAAGATTGAAGACANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGATTGAAGACAAAAATTTGCGAAGAAAAA
TAAACCTTGAGCACAAAAAATGCTTTTTTAAACACTTTTTTCCACCGAAA
AACAAATAACTTTTACAGACTTTCCTTCCCCAAACATTGAAGAAGCCTCT
ACTAATTAAAGTAAATGAGATAAGATTTAAGATAAAACCATAAAGTCAAC
CAGAATTTACAACCTTTCGTCGGAAGCAAAAGACGTGCTTTTCTCGCCGC
CATTTTGTTTTAGAATGAGAATTCTAGAGAATTCCATTCGTTTCCAGCTC
CCGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAGAAAATTGGAAAAAGCTGGTTTTTGACTGT
TTCTGATCCTAAAGTGCTATTTTTTGGTAAAAGCTATGCAATTTATGTTT
GGATTTCTAGAAAGCTTACCTATTCATTGTTAATTCATTTTTTATTTGAA
AGTAATCTCTTCATTGAATAAAAAGATATAGTCAAATCTTGTAGGGTCAT
TTTTCCAAAATCTTTTGCCAAATTTGATTTTCGCATTTCTCCATTTTACC
TTACGCAAACGCACGTGAAGGAGAAAACAAGCAATTTTTGTACATAATTG
ATCATATCTTTTTAATGCACAGAGACAAAATATTTTTTCCATAGATCACA
TTCATAATGTTCATACAATGTACTTAAAATTGCAAAATGCATCGGAAATT
CCACTCTTTTTTGCCTTTTTTAATTCAATTGCCTTGGAAATTCATACATT
TTCTTCTCTCGCCTTGGAAATTTCGAATTTTGGTGAAAACTTTTACCCTC
AGAAATCCTGTGTCATCTGCCCCCCTGTTACAGACAAATTCTGGAATGGC
CCAATGAAAAATGTGTTTTTTTATCAAAGCGTGTTCAAAACTGTACTTTT
TAAAGTTGCCAATTTGCGCGTAAAGGTGAAGCAAGTGAAATTGCATGCTT
TCAGGGGAGCGAGTTTGCGGATGAAATCAGAAAGAAATTGGCTGAATAGA
TTTTCCCAAAACTTGTTTTTTATCGGTATGTAGTTGGACCCCCCACATGT
GTCTGATTTAGAGATGCGTGTGTTAAAATGTTCGATCGAAGAAATAAGTT
TTCACCAATGTCTAAACTTTTGATTCGATTTAATTTACAAGCTTTTTGAT
ATTGAATTGACAAGAATGTGGAGCAAGATTGGTCAGAAAGCGGAAAAGAA
TAAATTTTTTTTGCTTATATCTGTCAGCATAATATAAAAAAAGGCAAACA
CTGTCCTGATATGAAACATGTGTCTGATATGGAACGGGAAAACTTATGTA
AAAATAAAACCTTTAAGCTAGGCTATTACTATTTTTATTACTTGCTTTTT
TGATACTTTTTGAAGGCTTCTTTGTTCGTCTCAACAATCATCCAATTTGA
GAAATCCGATGATGGACCATGACTTTGATGCTATTTGAATCAACTCTCCT
AAGAGGAAAGTAATTCGGCAGCAGTGGCTTGTCCGGTAGTCTGGTAGTGA
ATCGAGAAAATGGTCCAATTGATGTTTGAAATTAGTTTTGGAGCAGTTTT
TGAGGTTACTGATGGATTGTGGGAGGGCGTTAAATAGTCTGGGACCTTCT
TCTGACAGGGAGTCTCTCCATATGTTTTTTTGCCTTATGTTCACCTCTTT
TAGATAACATTTTTACCCAGTCTCTGGTTATCGTAACTGAAGATGCCACC
TTTGTTTTCAGCATAGTTAAAATTTGGTACAAGCTGTTCTAGGATGCTCT
AGGTGTAGATAATCCTGTATCATTCTCTGCGCCGCTCCAGGCTGTATATA
TAGTTTAAGTTCTTTGAGCTTCTCCCAATAGTTGAGATGTTGAAGTGTAG
GGATTCCATTCAGGTAAGATTTTTGAAGTGATTCCAGTTGTTGGATCAGA
TATCTCTTTGAAGGTGACCACAGCTGGAGCAATAGTCAATGTGTGGTAGT
ACCAGTGACTTCCAAAGAGTTAGCATTGCTTGACAATCTCTTGTTTTGAA
CGTTCAATGGATCCAAGCAATGATACTTTTGACTTTCTCGATCTGGTTTG
TGATGTTTGCTGTATGTCATGTTCAAGCCATTGAGCTGCATGTTGTTTAA
TGATGTCCATTGACACACCACATCAAGGTCGTTTTGTAGAAATTGAACAT
CTATCAGTGTTATTAGAGATCTCCTTCATTAAAACGTGTATCGTCAGCAA
ATGAAGATAGAAATGAATGTAGAATGTTAGTGTCAATATCTTGGATCATT
ATCAGGAAGAGAACCAAGGAACTTTGATTTTTGACATGGGTTCATGTATA
AAACATCTAATTCCGTTATTACGGGATTTTTAGGTTTTGCCTGGAAAGGC
TTATGATGACGTCATCACAAAACTTTCAATCTCCATAACTTTCGATAGGA
AGATTTTCAAGGCATGTTTTATACCTCAATTTTCATCAGCATTTCATGCT
CTTTCCGCTGAAACCATCAGATGTTAAATATTTTCAAAAAATTTTTTTTG
CCCAGCCACCTGATGACGTCATCTGGCAGGTGGCCAGGTAGGAAAATTTG
GTGTTACTGTTTATAATTAAGTTTTAGACCCTGTAAGGATCATCTGTGTC
AAATTTCATGCTTTTATCACCATTTGAAGTATTTTTGTGCTAACTGACCT
CACTATCAGGGCCTCTGAACCGTTCTTGTACAAAAAATCTTTTCAAGATA
CAACTTTTTAACAAGGGCTTATCTTTTTCCACTCTTTGATTTTTGTTCTC
TCTCAATTTTTGTCAATTCATCGGTGATCTTAATTTCACGAACTTCTCGT
GTTGTTTCAATTCAGTCAACTTCTTCATGAATCTGTATTTGATATGACTG
TTTTTGAACGCAACTTTGATTGGGCGCATAACTTTCTGTTAGTCACACTA
TGAAATCAAGCCTTAATAAAAAACTTAACATCAGTCATCTACAGGATGTA
TTTGTAGCAACAAGGATGAGAGTTACCTGAATCAAGCTCAAGATCCCAAG
ACAATTACAGGGCTGCAAATAAGCGTCGGTCATCAGTCAATGTCCGACTG
AAAAAGCTATTTGACCGACTGAAAATCTTTTGTATCGGTTATGATGTCCA
AATGAAAAAAGGAACAAACCATTAACTTGAGAGTTGAAAATAAATCTCTT
ACACCCCTGTCTCTTACTTAGCCTATTCTTTTAATACTCGGTTCCTTTGT
AGCTTTCAGGGTGTTTCTAAGTTAACTTTTATCGACTTGCTTTCTTCGTT
ACTTTCTTTGTTTCTAAGATCACTTTTATCAACCTGCTTTCTTTGTAACT
CTTTTAAGGATGTTTCTAAATTACTTTTGTCAACTAGCTTTCTTCGTAAC
CTTCTTTGTTTCTAAGATCACTTTTATCAACCTGCTTTCTTTGTAACTCT
TTTAAGGATGTTTCTAAATTACTTTTGTCAACTAGCTTTCTTCGTAACCT
TCTTTGTTTCTAAGATCACTTTTATCAATTTGCTTTCTTTGTAACTTTCA
AGAGTTTTCTTAAGACCATTTTCATCAACTTGCTTACTTCATAACTTTCA
AGAGTAGTGTTTCTAAGTTAACTTTTATCAACTTGCTTTCTTCGTAACTT
CCAAGGGTGTTTCTAAGATCACTTTTATCGAATCAATTTCTCTGTTATAT
ACAGTAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATACACTGAATG
ACCGACAGGATTTTGAGTTTGACCGACAGGATTTCATTTCTGTCGGACAT
GATGTCCGATTGACTAAAAATATTTATTTGCAGCCCTGCAATTAATTAAA
ACTTGAAAGTTGAAATGAAACAAAAAAATGACGATTGCTATAAACGTGCA
GCAACGCGAATCAACTAACTAAATTTCATCATTCAATTCCTGAGACAGCG
CTTCGATTTGTTAGGCCTTGATTACACGATAAAGTGAAATTAATTTCGCA
CATGTAAATGGGTCAGTGTTTAAGCTCTGGCAAATTGTAATAACCCTTTA
ATAATTTATTTTTTTTACTTTCAGTTTGAAAAGCCAGGCAGACGAGATGA
CTTCGACTATCCAGATATGGCTAAAGAATGTGGTAGGTTTATGAAAGTTC
ATTTTGGCTTAAGTGCACACTCTTTTTTTGAACGCTTCTTGAACGCTGAT
TTTCAGATCTCTTCTTTAAGTTTCCTAATTTAAACATTAGGGAGATAATC
ATGTCAGCTAATTCTCACACTCCCTTTTGCTCATTTGAATTCGAAATTGA
TCCAAAAACCATGAGGGGGTGTATAGTGCTAAGGTTCGTGCTTGTTGTTT
ATTTGTAGACATGACCTCGGAAAACCAACTATTTGAGAGACTAAATTTTT
TGTAAAGAAGTTACCCTAGAGAGACTACGTGAAGAGTGACCTTTAGTTCA
AGTACAATATGTTAATCACACAATACGCTGCAATACGTGCTCACTCAGTA
CCATGATATCAGCAAAATAAGATAGAAATAATCTAATAAAGATGAAAGAT
ACAATTTGAAACCTTTGAAAGGTTTTTTCTTACTTTTCCTTGTTTTTGAT
TGTTTTGTACCCTTTTTAAAGAGACCCAACACCTACCTTAAGGGAACTAA
TTTTTGCGGGAACTAAATTTTGCGGTTTTTGCGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTCACAGTACGGCTCTAATTTTCTTTCAAGTGAGAAATCCGCAAA
ATTAAGTTCCCGCAAATATTAAATATTAAATCTTGAACTGCGAACCGCAA
AAATTAGTTTCCGCAAAAAATAGTTCCCTTAAGGTATCTTACCTCTGTGT
CTGAAAAGGTATTCGTGGATAAAGGTATTCCAGGTGCAGAAAGAAAGCTT
TAGCATGACTTTGGATAACACTGACGCATTTAAGACCATAGAGCAAGTAC
GTCGGAAACATGCGAAGGAGTGCAATGAAATTACAATTACAAATCTCTTC
CCCTGATAAGTCTTAAAACCGCCTATGGATAACATTTTCATTATTTCCAT
CTGTAGGAAAATTAGGCTTGGAGAATGTGCAAAAAAAGTATAAAATTCAT
GATGGTAAGATTCTAAGGATCTCATTATGTTTTTGGTCAATTTCATCATG
ATCGTTCTTATTATCATATATTTTGAATTTCCTTATTTAGTGACCAAAGC
CCTTGAAGACGCTGGGATATCTTACACAGAAATCCAACAAGCTACTGTCG
GCTATTGTTACGGTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064336-exon-scaffold_411-1575043694:57774..57890 | TCONS_00064336-exon-scaffold_411-1575043694:57774..57890 | Clytia hemisphaerica | exon |
| TCONS_00064336-exon-scaffold_411-1575043694:52409..52466 | TCONS_00064336-exon-scaffold_411-1575043694:52409..52466 | Clytia hemisphaerica | exon |
| TCONS_00064336-exon-scaffold_411-1575043694:51024..51100 | TCONS_00064336-exon-scaffold_411-1575043694:51024..51100 | Clytia hemisphaerica | exon |
| TCONS_00064336-exon-scaffold_411-1510915933:57774..57890 | TCONS_00064336-exon-scaffold_411-1510915933:57774..57890 | Clytia hemisphaerica | exon |
| TCONS_00064336-exon-scaffold_411-1510915933:52409..52466 | TCONS_00064336-exon-scaffold_411-1510915933:52409..52466 | Clytia hemisphaerica | exon |
| TCONS_00064336-exon-scaffold_411-1510915933:51024..51100 | TCONS_00064336-exon-scaffold_411-1510915933:51024..51100 | Clytia hemisphaerica | exon |
| TCONS_00064336-exon-scaffold_411-1491911889:57774..57890 | TCONS_00064336-exon-scaffold_411-1491911889:57774..57890 | Clytia hemisphaerica | exon |
| TCONS_00064336-exon-scaffold_411-1491911889:52409..52466 | TCONS_00064336-exon-scaffold_411-1491911889:52409..52466 | Clytia hemisphaerica | exon |
| TCONS_00064336-exon-scaffold_411-1491911889:51024..51100 | TCONS_00064336-exon-scaffold_411-1491911889:51024..51100 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_411 | supercontig | scaffold_411:51024..57890 - |
Blast
The following BLAST results are available for this feature:
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