TCONS_00064404 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064404
Unique NameTCONS_00064404
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length187

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064404 ID=TCONS_00064404|Name=TCONS_00064404|organism=Clytia hemisphaerica|type=transcript|length=187bp
TTGATAAATGGGTGACCGGGGGTGAAGTCGACCCTaccatgcaaaaaaaa
atcatttatggAAGACTTCTCAATCTgcatgaaaaagaaaagtacAATGC
AATTTGTATTTTAATCCATAAGCCTGAGAAATATGTGACAATGGAGAGTT
ATTGTACGCCTGGATTTGCTGAGGAATTCTTCCACAC
Run BLAST on NCBI

transcript from alignment at scaffold_413:6888..7547-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064404 ID=TCONS_00064404|Name=TCONS_00064404|organism=Clytia hemisphaerica|type=transcript|length=660bp|location=Sequence derived from alignment at scaffold_413:6888..7547- (Clytia hemisphaerica)
TTGATAAATGGGTGACCGGGGGTGAAGTCGACCCTACCATGCAAAAAAAA
ATCATTTATGGAAGAGTAGGTTTTATTTAAAAAAATAGTACATTTTTTGG
TTACCTTTTGTTACTATTATAAAAAATATCAAAGTTTAAAATAAAAGGAG
CTCATCCGTACAATTGTTTATCGGCGATCCAAAAAATATCTGCAATCTGA
TTGGTTAAAAAGAGTACAATATATCTTGTATTTTACATGTACAAAATATA
AATTGACGAAAAGATGTTGTTGCATTGTAGGGGTAGCAGCAATCTAACGT
CACTTTGCTACAAAACTGCCCTGTGCTTTTTTTCCAACACAAAAAGTGTA
TTTTTTGAGTCAGTTATCAGACATTTGCTCTTACAATATGGAAATATTTA
ACTCGTTCCGGACTTTCCGTATATGTACGAAATATTGTACGGAAAAATCT
CGGAACTCGTAAAATATTTGTCATATTGTACTCGCAACTGTCCGATAACT
ATTACATACTTATTAGATTTTTTTTCTCAAATTTATAGCTTCTCAATCTG
CATGAAAAAGAAAAGTACAATGCAATTTGTATTTTAATCCATAAGCCTGA
GAAATATGTGACAATGGAGAGTTATTGTACGCCTGGATTTGCTGAGGAAT
TCTTCCACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040383XLOC_040383Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064404-exon-scaffold_413-1575043694:7483..7547TCONS_00064404-exon-scaffold_413-1575043694:7483..7547Clytia hemisphaericaexon
TCONS_00064404-exon-scaffold_413-1575043694:6888..7009TCONS_00064404-exon-scaffold_413-1575043694:6888..7009Clytia hemisphaericaexon
TCONS_00064404-exon-scaffold_413-1510915933:7483..7547TCONS_00064404-exon-scaffold_413-1510915933:7483..7547Clytia hemisphaericaexon
TCONS_00064404-exon-scaffold_413-1510915933:6888..7009TCONS_00064404-exon-scaffold_413-1510915933:6888..7009Clytia hemisphaericaexon
TCONS_00064404-exon-scaffold_413-1491911889:7483..7547TCONS_00064404-exon-scaffold_413-1491911889:7483..7547Clytia hemisphaericaexon
TCONS_00064404-exon-scaffold_413-1491911889:6888..7009TCONS_00064404-exon-scaffold_413-1491911889:6888..7009Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_413supercontigscaffold_413:6888..7547 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	2.11613	0	0	21.7538	49.7457	38.2252	14.5476	18.4894	19.2015	7.8931	26.6216	14.9071	24.4469	10.5546	11.0446	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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