TCONS_00064421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064421
Unique NameTCONS_00064421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length239

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064421 ID=TCONS_00064421|Name=TCONS_00064421|organism=Clytia hemisphaerica|type=transcript|length=239bp
TAAAATTATGGAttatttcaacaaaagaaatagatttatatattttataa
tctttgacttttctgggtttttGAACTTATGAATTTTTTTAGGATATATG
GAATTCATGGAAATTTCTAGGACTTGCCAGATTTTAGATTAAGTtatgtc
aataaattttgagaaattttaggACTCTTGgggatttttctgatttttct
aagaCCTTTTGATTTTACAGTCTAGTTTATTTAAACCGG
Run BLAST on NCBI

transcript from alignment at scaffold_414:3063..3301

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064421 ID=TCONS_00064421|Name=TCONS_00064421|organism=Clytia hemisphaerica|type=transcript|length=239bp|location=Sequence derived from alignment at scaffold_414:3063..3301 (Clytia hemisphaerica)
CCGGTTTAAATAAACTAGACTGTAAAATCAAAAGGtcttagaaaaatcag
aaaaatcccCAAGAGTcctaaaatttctcaaaatttattgacataACTTA
ATCTAAAATCTGGCAAGTCCTAGAAATTTCCATGAATTCCATATATCCTA
AAAAAATTCATAAGTTCaaaaacccagaaaagtcaaagattataaaatat
ataaatctatttcttttgttgaaataaTCCATAATTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040395XLOC_040395Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064421-exon-scaffold_414-1491911889:3063..3301TCONS_00064421-exon-scaffold_414-1491911889:3063..3301Clytia hemisphaericaexon
TCONS_00064421-exon-scaffold_414-1510915933:3063..3301TCONS_00064421-exon-scaffold_414-1510915933:3063..3301Clytia hemisphaericaexon
TCONS_00064421-exon-scaffold_414-1575043694:3063..3301TCONS_00064421-exon-scaffold_414-1575043694:3063..3301Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_414supercontigscaffold_414:3063..3301 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.82808	0	1.03492	0	2.46526	3.89617	3.52542	2.2003	1.54049	3.81628	0.926043	3.65247	0.607898	0.631308	1.03804	1.67097	2.0585	4.21978	0.971643	0	0	0	0	0	0	0	1.25333	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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