TCONS_00064413 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00064413
Unique Name	TCONS_00064413
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	534

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_414:38647..44093+
coding sequence from alignment at scaffold_414:38647..44093+

transcript sequence

>TCONS_00064413 ID=TCONS_00064413|Name=TCONS_00064413|organism=Clytia hemisphaerica|type=transcript|length=534bp
aaaattaCATAACTTAATCAAACATGAAAGACCTCTATACAAGCTGTATT
GACTAAATATTCTCCCATTTCTTTCTATAGGACGATGCAGTGGCTAAACA
TTTTGTAGCTCTCTCCACCAATAAAGATAAAGTGTCAGAGTTTGGTATCG
ACACCAAGAATATGTTCGCTTTCTGGGATTGGGTTGGAGGACGTTATTCA
CTTTGGTCAGCCATTGGAATGAGTATCGCCATATATGTCGGAATGGATGA
TTTTGAACAACTTTTATCTGGTGCACATTTCATGGATAACCATTTCCAAA
CTGTCCCAATGGAAGAAAATCTACCAGTCATCATGGCGGTGTTGGGAGTA
TGGTACAACAACTTCTTTGGCTTACAAACGCACGCTCTTCTTCCTTATGA
CCAGtaCATGCATCGGTTCTCCGCCTATTTCCAACAGGTATTTATATGtc
gaagaaatttttcaagAGCAGGTGTTAATAATTTATCATTTTGGCAtctt
tttagaataaaaatttattCGGGTGACAGCTCAA

Run BLAST on NCBI

protein sequence of TCONS_00064413-protein

>TCONS_00064413-protein ID=TCONS_00064413-protein|Name=TCONS_00064413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MFAFWDWVGGRYSLWSAIGMSIAIYVGMDDFEQLLSGAHFMDNHFQTVPM
EENLPVIMAVLGVWYNNFFGLQTHALLPYDQYMHRFSAYFQQVFICRRNF
SRAGVNNLSFWHLFRIKIYSGDSS

Run BLAST on NCBI

transcript from alignment at scaffold_414:38647..44093+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00064413 ID=TCONS_00064413|Name=TCONS_00064413|organism=Clytia hemisphaerica|type=transcript|length=5447bp|location=Sequence derived from alignment at scaffold_414:38647..44093+ (Clytia hemisphaerica)
aaaattaCATAACTTAATCAAACATGAAAGACCTCTATACAAGCTGTATT
GACTAAATATTCTCCCATTTCTTTCTATAGGACGATGCAGTGGCTAAACA
TTTTGTAGCTCTCTCCACCAATAAAGATAAAGTGTCAGAGTTTGGTATCG
ACACCAAGAATATGTTCGCTTTCTGGGATGTAAGTTgcaaattcattttt
gaaataccttattggggaaaacttcgtcggggaaaagtgacgaaattttg
gacaagtgacgaaaattttcaccgacgaaaattttccccgacgaagttct
ccccgataaggtattcctTTAGGCAGAGGGTTTTATTTAGGCCCAGCGAC
CGGCGAACGGCAAATTTCGCTGGCCCAAAGCACAAAAAAACAAATCGTCG
ACCTGAAAATTCGCCGGTTCGTCGCGTAAAGTACATATTCGCGCTAATCA
ACACACTGGGCTTGCTAAGAATTTGCTAGCGTATCAAAAGCGAAGCAAAA
CTCCTTTGCAAGACAAAAATTAGAACCCTAGCTAGGCCTGGTTTAAAAGA
ACTCTAACTCATTTTTGTTCCTTTGCTCAAACATAAGATACTGTTTCTGC
CATGAAGGGAACTTTTTAAAGTTCAGTGGGTTGGAGGACGTTATTCACTT
TGGTCAGCCATTGGAATGAGTATCGCCATATATGTCGGTACGCACGTGTT
GTGTTATACTTCAAATACAGTTAAggtgagaccaatttgattagttgttt
tacgggcccgaccgaccctgaaattccaattTGGTCGtaatacattttta
ttttcattgctttactgactgtcaaatttttcaaaaatttggtagttttt
ccaaggttttgagaacgttatgttcaatttttcattttatccatgaattc
gaactttttgtgtctttttattttcttctatttcgcatttttgtcaagat
ataGTAgcttttgctgcctttttagcagattttataggtgaaattctact
attattttcattttttttttcgccgaccgaccgaccctctttttagGTAG
CTTTGCCCGTAAAACAAcgaattaaattggcctcgcctaaaCCCTAATTA
AAACCTCTAATACCATGTTCAGACTTTattgttccgtttcgctccggtat
gattttcgttacggatcgagagtgttcatatcggtttcggaacgtttcga
aGCAAGAAAACGGAGTAGTTCCGTTCCGATTagaaaagtggagcgaaact
gtttctatctgttttgctttgtaacgtcttctttcttaacgtttcaaatt
ttgacgttcaccGTTTCGAAACGGAACAGAACTATAACGCCTGAACATGG
TCTAGAGACGTGTTGTGTGTGCCAGACAAGCTTTTTAGAGAGAGAAagtg
gtattgacctttttattcTAACACGACTCTTCgttttttcttgtcttttt
tatatcctttcctcctctGGCCCCCACTGTAAGGGTCATTTTTTGGCCAA
ACTTTCTCTGCATGCACTGTAAAGGTTCGATTTCGGAAGCCAAATTTTCC
GCCGAACAGTTGTTttcagaccccccccccccccccNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGTG
TAAAGAACTAAGAAACAGAACAGTTCTCAGATAGtgtcccaaaaacttaa
aataaaaaactactcttgtctggcacacacaacaagttggccacacctca
ccacctttgctaccatttttgtttacattttttttgctgatgaagcattt
ttaaaagcgcggaatatttccgaccattaaattttgaaatttttagagtt
ttggatatttccgaccatcaaatgatatttctgaccatcaaatgatattt
ccgaccatcaaaagatatttccgaccatcaaatgatatttccgaccatta
cgctatgatatttccgaccattaaattttcaaaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCTCGCCATCACCCTCGCCACttt
aaccgtagccgtagagaattccagatacataatctcgctaatgaacgcgc
acggggaacacaaatttgcacgagtaaaggaaatttcgagatatAGAGCT
AGGTTTATAGGGCATTGTTGAATGAGTACcgtaaaacttgttcgagttaa
ggagacattcgagctaAGAGGTTCaagtttaaccctattcgtactagggg
gggggctctttctgttcggaggtcaaactattggtaatagttcatgaaat
aatagagcttttgccgtgaaattttctgtaaattcctaacttttatttag
cttcaaaataaaaaaaaatttgacacctaaatattttcacaccttgagca
tgatgtcatttctgacagtaaggtgtcacaaaaattgacacttttctaat
acaaatttatttttaatgtcaaatatatcatttaaaccgtagtttattga
atatttaggataaaataagcattttaaactcagacaacttttttctaaag
cctttgttagaatacaatagctatttataagaacaaaggaaattttcggt
ttttgctcactttgggcatgatgagtgacgtcatcaaaaaaattttttgt
caaaagttaccttacgtgacaaggatcttgtgtgccaaatttcatcaaaa
aagacccactagatgaaaagttaaggggtggtacaggaaaagcccccccc
tagttctgaaccgcccctaaaagcctagtttgaatagggttaagagaCTC
CGCTGCGAAAGAGCCAGTAATAGCTTTACAGTACACATTGTACATAATTC
TAGACATCTTGAATTCAGTCGTAGTCAAAAAACTTCTTACCTTCATTGCC
AAGAATTGGAGAATTTTCATCATACGTTATTCCATCCTGAATATCAAGTG
ACTTAGGGCTAaggccattgagtttcaagcccgaagggctagaggcgaga
ctcctgaaTGAGAAATGAAAgcacttatttcccattcagaaagcccgcgc
gtagtttttacacaaacgccggattgaaactaaaatttatcgctagattt
caaaaaatgtagtcctcctaAACAAAGCAACTGCTagacaatccgtcgtc
atgattacagcgcgttctatgcgcgttttggatgggaaataagtggcttc
aatttcttttgCCTGAGAAGAGTTAAAGTTTCATCTATAGcacttcgggc
ttgaaactcaatggctaAGACCTACTAAGAGCTAACCATGTATTACGAAT
GTTTTAGGAATGGATGATTTTGAACAACTTTTATCTGGTGCACATTTCAT
GGTAGGACAAAAGATAAAACAATTTTGATCAACTaacttattacacgaat
attactagtcattctAATAAGACGAATTGAACAATTTCccgttaataaaa
accccctcaATTAATAAAAACCAGCCGCTGTTTCCttgaaaaggaagaaa
aattcgtgttaatttcagatcgtgcAACTCTCAAGGTCATTAAATAtttg
cctagtaatatttgtgtaataaagGTACATCTTCAattttgagctttact
aagcaCATTGtgacgtcaatcgatacttTCAGACGTTTTGAGATAGAGAG
CGTTATATCAGTACTTTAACTTATTTTGTTCCTTCGAATATTATGATCTT
CAGTTATCGCTTAAGTTCGTGACATTTTATCTTCAGCTAActgattttca
tattttatgtCCTTTCATCTGTAGGATAACCATTTCCAAACTGTCCCAAT
GGAAGAAAATGTGAGTATTCGTAATATGTGCCGATGTTTAtgacatttta
tttttacactGGTTTTGAAACAAGAATACGTTTTTCCTTTCATGTTTAAA
GCCAATAAGTTTGTTAAGTTCATTCAATTAAAATCGATTGCTTTTGAATA
AACGCCTCCTTCTTTTAAACACCCCCTTGAATAAACGCTCATCCTTAgag
gaaaattttaaataaaagcaCTCCAAAATAAATgccctctttgaaaaaaa
acgcATCCTCTCTAGGAGGAGtctttatttgaaacaagtaaTTGTAAGGT
AGTATACTCACAAcggttaaaaaaagttttactaGCATTCTTTTCGTTCC
AACAGCTACCAGTCATCATGGCGGTGTTGGGAGTATGGTACAACAACTTC
TTTGGCTTACAAACGCACGCTCTTCTTCCTTATGACCAGGTGAGAATTTA
CCTATCTCTCTTGATTCCCTTTTCGcaagtttacaaaaaaaacatatata
ttttactccctatgttgaggaggtgtggacgtccagggtggtctggaaaa
aaaatccagggacTGGTTTTTCGATCGTAAAAAttcagggtggtcagtaa
aacgacttcaaaaatccagggtggtgtaaaaattagaaaaaaaatccagg
cGATCCTTTGGAACCTTTCCcaaaaagacctcctcaacaagGGGTGTCAA
TTTGTTCTGGAATAGCTCAGCCtgtatttgatgtattttctcAGTCTAAC
GACGAAAGCATTCTCTTTATTAAGCTGAAAAGAATTGCTGTATCCCCCCT
CTCCCGATAGAGGGAACAATGATAATCATTTCTTGGGAACTTGCTTTATC
GAAGTGAGTGCCTTTTTCAAACACAAACCATTATCTATTACGTTACGTGC
TGAGTGTTGAGGATTTTAACAcggaaattattttcaaagcgaccgtagtg
cagtggtagagcaccCGGCtgcggtgcgcaaggttgtgggttcgacccct
agccgggtcataccaaagtttccaaaatggtacttgatgcctctctgctt
gatgctcagcaattaagagagggatcaagggtaagtggagcaatccagtg
agaaagagtggcgccctcccctaccttcgagtagatagctatcgaaagag
gctCCTCGGGTGGCCTGTGACTGCGGAGCGAGTAAGCAATTAacgattga
ttttttttctgttttagtaCATGCATCGGTTCTCCGCCTATTTCCAACAG
GTATTTATATGtcgaagaaatttttcaagAGCAGGTGTTAATAATTTATC
ATTTTGGCAtctttttagaataaaaatttattCGGGTGACAGCTCAA

Coding sequence (CDS) from alignment at scaffold_414:38647..44093+

>TCONS_00064413 ID=TCONS_00064413|Name=TCONS_00064413|organism=Clytia hemisphaerica|type=CDS|length=2232bp|location=Sequence derived from alignment at scaffold_414:38647..44093+ (Clytia hemisphaerica)
ATGTTCGCTTTCTGGGATTGGGTTGGAGGACGTTATTCACTTTGGTCAGC
CATTGGAATGAGTATCGCCATATATGTCGGAATGGATGATTTTGAACAAC
TTTTATCTGGTGCACATTTCATGGATAACCATTTCCAAACTGTCCCAATG
GAAGAAAATCTACCAGTCATCATGGCGGTGTTGGGAGTATGGTACAACAA
CTTCTTTGGCTTACAAACGCACGCTCTTCTTCCTTATGACCAGtaCATGC
ATCGGTTCTCCGCCTATTTCCAACAGGTATTTATATGtcgaagaaatttt
tcaagAGCAGGTGTTAATAATTTATCATTTTGGCAtctttttagaataaa
aatttattCGGGTGACAGCTCAATGTTCGCTTTCTGGGATTGGGTTGGAG
GACGTTATTCACTTTGGTCAGCCATTGGAATGAGTATCGCCATATATGTC
GGAATGGATGATTTTGAACAACTTTTATCTGGTGCACATTTCATGGATAA
CCATTTCCAAACTGTCCCAATGGAAGAAAATCTACCAGTCATCATGGCGG
TGTTGGGAGTATGGTACAACAACTTCTTTGGCTTACAAACGCACGCTCTT
CTTCCTTATGACCAGtaCATGCATCGGTTCTCCGCCTATTTCCAACAGGT
ATTTATATGtcgaagaaatttttcaagAGCAGGTGTTAATAATTTATCAT
TTTGGCAtctttttagaataaaaatttattCGGGTGACAGCTCAATGTTC
GCTTTCTGGGATTGGGTTGGAGGACGTTATTCACTTTGGTCAGCCATTGG
AATGAGTATCGCCATATATGTCGGAATGGATGATTTTGAACAACTTTTAT
CTGGTGCACATTTCATGGATAACCATTTCCAAACTGTCCCAATGGAAGAA
AATCTACCAGTCATCATGGCGGTGTTGGGAGTATGGTACAACAACTTCTT
TGGCTTACAAACGCACGCTCTTCTTCCTTATGACCAGtaCATGCATCGGT
TCTCCGCCTATTTCCAACAGGTATTTATATGtcgaagaaatttttcaagA
GCAGGTGTTAATAATTTATCATTTTGGCAtctttttagaataaaaattta
ttCGGGTGACAGCTCAATGTTCGCTTTCTGGGATTGGGTTGGAGGACGTT
ATTCACTTTGGTCAGCCATTGGAATGAGTATCGCCATATATGTCGGAATG
GATGATTTTGAACAACTTTTATCTGGTGCACATTTCATGGATAACCATTT
CCAAACTGTCCCAATGGAAGAAAATCTACCAGTCATCATGGCGGTGTTGG
GAGTATGGTACAACAACTTCTTTGGCTTACAAACGCACGCTCTTCTTCCT
TATGACCAGtaCATGCATCGGTTCTCCGCCTATTTCCAACAGGTATTTAT
ATGtcgaagaaatttttcaagAGCAGGTGTTAATAATTTATCATTTTGGC
AtctttttagaataaaaatttattCGGGTGACAGCTCAATGTTCGCTTTC
TGGGATTGGGTTGGAGGACGTTATTCACTTTGGTCAGCCATTGGAATGAG
TATCGCCATATATGTCGGAATGGATGATTTTGAACAACTTTTATCTGGTG
CACATTTCATGGATAACCATTTCCAAACTGTCCCAATGGAAGAAAATCTA
CCAGTCATCATGGCGGTGTTGGGAGTATGGTACAACAACTTCTTTGGCTT
ACAAACGCACGCTCTTCTTCCTTATGACCAGtaCATGCATCGGTTCTCCG
CCTATTTCCAACAGGTATTTATATGtcgaagaaatttttcaagAGCAGGT
GTTAATAATTTATCATTTTGGCAtctttttagaataaaaatttattCGGG
TGACAGCTCAATGTTCGCTTTCTGGGATTGGGTTGGAGGACGTTATTCAC
TTTGGTCAGCCATTGGAATGAGTATCGCCATATATGTCGGAATGGATGAT
TTTGAACAACTTTTATCTGGTGCACATTTCATGGATAACCATTTCCAAAC
TGTCCCAATGGAAGAAAATCTACCAGTCATCATGGCGGTGTTGGGAGTAT
GGTACAACAACTTCTTTGGCTTACAAACGCACGCTCTTCTTCCTTATGAC
CAGtaCATGCATCGGTTCTCCGCCTATTTCCAACAGGTATTTATATGtcg
aagaaatttttcaagAGCAGGTGTTAATAATTTATCATTTTGGCAtcttt
ttagaataaaaatttattCGGGTGACAGCTCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040391	XLOC_040391	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00064413-protein	TCONS_00064413-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_414	supercontig	scaffold_414:38647..44093 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.4026	17.6693	14.6072	16.7649	10.202	6.96455	9.47387	14.1021	17.9748	22.8077	21.9237	16.5627	14.0818	16.0825	11.0396	11.6996	27.1309	26.2177	12.5165	12.8718	17.7027	22.934	15.3817	19.192	33.8687	25.9319	17.6945	11.2208	17.6914	16.7799

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001672	G6P_Isomerase
IPR018189	Phosphoglucose_isomerase_CS

Vocabulary: **Biological Process**
Term	Definition
GO:0006096	glycolytic process
GO:0006094	gluconeogenesis

Vocabulary: **Molecular Function**
Term	Definition
GO:0004347	glucose-6-phosphate isomerase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006096	glycolytic process
molecular_function	GO:0004347	glucose-6-phosphate isomerase activity

Blast

[Close]

BLAST of TCONS_00064413 vs. Swiss-Prot (Human)
Match: G6PI (Glucose-6-phosphate isomerase OS=Homo sapiens GN=GPI PE=1 SV=4)

HSP 1 Score: 201.83 bits (512), Expect = 2.914e-61
Identity = 88/117 (75.21%), Postives = 105/117 (89.74%), Query Frame = 3

Query:   87 AVAKHFVALSTNKDKVSEFGIDTKNMFAFWDWVGGRYSLWSAIGMSIAIYVGMDDFEQLLSGAHFMDNHFQTVPMEENLPVIMAVLGVWYNNFFGLQTHALLPYDQYMHRFSAYFQQ 437
            AVAKHFVALSTN  KV EFGID +NMF FWDWVGGRYSLWSAIG+SIA++VG D+FEQLLSGAH+MD HF+T P+E+N PV++A+LG+WY N FG +THA+LPYDQY+HRF+AYFQQ
Sbjct:  238 AVAKHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQ 354

The following BLAST results are available for this feature:

BLAST of TCONS_00064413 vs. Swiss-Prot (Human)

BLAST of TCONS_00064413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
G6PI	2.914e-61	75.21	Glucose-6-phosphate isomerase OS=Homo sapiens GN=G...	[more]

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TCONS_00064413 (transcript) - C. hemisphaerica