TCONS_00064446 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064446
Unique NameTCONS_00064446
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064446 ID=TCONS_00064446|Name=TCONS_00064446|organism=Clytia hemisphaerica|type=transcript|length=355bp
AAATTGAATTTCGAGGGTGGATGagttatgaaatttttgatgagaaaaac
TATGTACAGacttaaagtgttcttttcaTTTTGGAGTACCTTATAAAtat
agtttttttctttatgaatTTCATAAATCCATCAGCAATTGATAAAATAA
CTGAACAACTCGAGGATAACTGACAACTGAATTTCATTTGAATGACGTTT
GCGTACTACGCAATATTGTTCGCCAGCTTCAAACGTCGGGCCGGGAAGac
aaaaatgaaagaagaagGCTGTTGAGAGATCTTCAGGACGAGAGGACGAT
AAGGAGAAATCTGGAGGTTGAGCATGAAATGACGATCACAGATATGAGGA
GAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_415:124381..137888-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064446 ID=TCONS_00064446|Name=TCONS_00064446|organism=Clytia hemisphaerica|type=transcript|length=13508bp|location=Sequence derived from alignment at scaffold_415:124381..137888- (Clytia hemisphaerica)
AAATTGAATTTCGAGGGTGGATGAGTTATGAAATTTTTGATGAGAAAAAC
TATGTACAGACTTAAAGTGTTCTTTTCATTTTGGAGTACCTTATAAATAT
AGTTTTTTTCTTTATGAATTTCATAAATCCATCAGCAATTGATAAAATAA
CTGAACAACTCGAGGATAACTGACAACTGAATTTGTAAGTATTTCAAAAG
GCGCTAACTTTAATAAAAGTAATACATAGCTATTATTTGACACAGAGCCT
TCCTTTTGGGTCCTACTCTTGTCTCCCTAATTTAGACGTCCCTTCCGCTC
TTATTAAGACCCAGCCCCCCCCCCGCTAATTAAATTCGAATAATTCGATT
CAAAAAGTTTTGTATCCTTTTTAGGGACAATGTGTGAAAGATTGCTAGAT
TATGAGCGAATAGATTTAAGCATTCGCAACCTATAAACCATACTTCTTTC
AGTAATACGTCTCAACATATAGTGTCCCCAAAAAAGTGGACACTTTTAAA
TAAAGTAAAATCGTCATGATTTTTTGCGAAATTTTATGATTTTATACTTA
ATTTTTCTCCAAAACGTATTCTACTTAATATAAAAAAATTTCCGTTTTAT
TTTTTGGGGGGACTCACTATAGGGTAAGAAAGCCGTGGCTGGAATAAATA
CATCTAAATTTCAGTGTTGTAAAAACGAATTATAATCAATAAGCTGTCTC
CTTCGTACTATTTTCAATGAAGCTAAAGTTACCCATAGCATTTAGCTATC
GATTCATTTCTTTTTTATAAAATTCTTAAAAGATCAAACTTTAGAAGCGC
AGATTTTCACAGAATTTAAGATTTAACGAGTTTAAGTCAAGATTCTTTTT
AGTTCAATCTATTGGGAACATAGGACTGAAATTATTTTTCCAAAATTCAA
AAGCTGGAAATTTTCACTACTAGAAAGACAACAACAACAACACGATTAGT
GTCGAAAATTTTTCTTTTTCTTTCACAGACCCGCTGGGACACCAGCCCCA
CTTGAAAATTTGGCAAAAATTTTGTCCCTAGTGGGAAAATATCCTGGAAT
TTCAGCCCATTGGGAAATTTACTTTGATTTCATCCCCTTTCGAAATTCAA
TGTTTAAAAATGGCACTCCAAAACTATCCCACTGGATTTTTTGTCCTTAG
AACAATAGAATTTCTATCCCCATTAGAATTTCAATAGGGAGTTTATCCCC
ACTGAGGAAGAAAGTTCCACCGGGGCTGTGAAACAGGGGTGTATTATTCA
TAGATGGAGAATGTCAGGTCGGACCTGAGAAAAAGTGGTCCTAACAGAGA
GTAAGTTGCCCTTACAGAGACAAGGTGAAAAGTGACTCTTTCCGACATTT
TCCGATTGCTCATCGATTGGAAACAGTCCATCACAAACTGCCATATAAAC
AAAACTCAACATTCTCACAAAAGTTGTCTTTTTGATTTCCCAAACATTCG
TCTAAAGCGTTCACTTCCACAANNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GAAAGTTGCGTATTTCCAGTGAGTAAACGATTCTGACAATTAACAAAATT
GATGATGATGATTTTTTTTCGGTCAGGCAAATGTCTCTTATTGGGGGTTC
TAGTCTTGACCCCTGAGCCTACGCGAGATTGAAGCGTTTGGGTGAACGAG
ACAAAACTCCAAAAAAGCTGGTGTTTTGAAGTGCTTCCGTGCGATCGAAA
TATCGCGGTTTGTGACGCACTGGGAAATAGCTATCAATTGTACCGAAGGG
GAGAGTCTAATAAATGACGCATTGCCATAGAACAGATATATAACTTCTCT
CACTTATAGATTGACACCCCCTGCCATAAATTTCTCTGTGAAATACCTAG
TAAATCATAATCTGTCTTACAACACAACTTAATAATCAAATATCAACAAA
TATTTCTACCTGTAAAAATCATGTCTGTGTTGTTGTTGTTGTGTGTAGTG
ATGTTCAAGCGCAACTCTTTAATTGTAAGATTCCTATCACTTTATTGGTG
TATTTACTAACTACACAAACATAAAATACTATGCTAAAATAAACTTCTTT
CCTTAATATTTGCACCACATTTAGGATGAAGGAATATTTTTATAGTTCTT
AAATTTTGGTGGTAAAATCTACCTACAATCCTGCGTTTGTATGAAAAACA
CGCAACCAATGTAGGAAATAATGGCTACAAATCTTACATAGTAGATTACC
AAATATCCCTGTAACAAAAGATGAAGGGCCCTTTTTCATTTTATGTTCTA
GAAAATGGCCCAACAACGTCCTCAAATATTTGCTTTGCCACCACCACCAC
CCCAACCACCACTACCACCGCAGCACCGACAACCTCCACTACGACAATCT
CCATCACGACAACCTCCACCACGACAACCTCCACCACCACCACTTCAACC
TCCACCATTTTTTCGTCCCCTGATGGAATTACCGCCCCCACCACCTCCTC
TGCCACCAGTTGGAATATATGGTTTACACCATATTAATGTTGATGTGAGT
TCCTTATAAAAGTTTTTCTTTAACCCTATTCATCCTAGGTTTTTAGGGGC
GGCTCAAAACTAGGGAGGGGGGCTTTTCCTGTACCACCCTTAACTTTTGA
TCTAGTGGATCTTTTTGGATGAAATTTGACACACAAGATCTTTGTCACAT
AAGGCAACTTTTGACAAAAATTTTTTTTGATGACGTCACTCATCATACCC
AAAGTGAGCAAAAACCGAAAATGTCCTTTGTTCTTATAAATAGCTATTGT
ATTCTAACAAAAGTTTTAGAAAAAAGTTGCCTTATCGGTGACCCAGAAAT
ATCTGCAATCTGATTGGTTAAAAAGAATACAATATATCTTGTATTTTACA
TGTACAAAATATAAATTGAAGAAAAGATGTGTTGTTGCATTGTAGCGGTA
GCAGCAATCTAACGTCACTTTGCTACAAAAGTGCCCTGCGCTTTTTTCTC
ACATAAAAAGTGCATTGTCATGAGGACATAGTTCTGCAATTTTATTATTT
ATGTTCGTAGTTATGGTAACCATTGAATGGAAGCTCACCTTGAGTACATT
AGATAGAAATTTTATTAGGAGAAAAAACACTTCGCTTTTAGCCTCGGGCG
AGGCAAGTCCTCCCGTCGGGGAGTATCAACATGAGAGAAGAGATCCAGGT
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGATTTATTGATACCCAA
ATTACCGTCAGCCACGCCCCGAATTATGAACAATAATGAACAAACGTTGT
ATAGAAACCACAGGTTAAATCAAACCCAAGCAACTTAATTATTAATGCTC
TGATTTGATTATTTGTGGAAACTAAACGTCTATAGCAACGTCCAACATGG
ATTCAATCGATTTTTAAACCGATGGCCGCTCTTCAGATAACCACCAACCT
TGTGTCGGACACGATGTGACTATTGAAAACGTCCACGACTGCTCCTCTTT
TGTTTATGAGCCAATCACATTGGTGTTTATCGTACAAACTATTTGTATTG
AGATCATATGAATCACCTAAACGTTGACCACGATGACTTTCCGATTTTCG
ATGAGCATGATAAGACTTTTAGATCTTTCTTAGCTGATTTTAATGAACTG
TCTTCCGTTGCTGAATTGAGTGACAACCAGAAGCTGACTCTACTACCAAC
CCGTTTGAGACGAAGACCAAAATGGTAATTTCGAGGACTAAGCAACGAGC
GAAAGAATACGTATGATAAAGACATTGAAAGTCTGATTACTGAGTTTGAC
AATGAATCTCTTTTGAGAAAGGATCTCTATTCTATCAAACAGGGTCAATC
TACGTTAGATGAATATGTTGAGAAAATGGAACAAATGTTTACCGAGCTGA
ATGTTAAACCAGATGAAAAGTTAGATTTCTTTATGGCTGGTTNNNNNNNN
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CAGAGTCGATCGTGCGTTCCCGTCTTCTCGGAGTGTTGAAAGTTATTGAA
TTTTTATGCTTTATGGAACTGTATGTTTGGATATTGTATAATGAGTTATC
AAATGAAATTAGACTTCAACATTTTGTGTCTCCCACCTCCTTGATCTACT
CCATGAACTCCATCTCCTGTCTTCTATCTTCTAACGGCAGTCAGGCCGAT
ATCCGGGGAAAAACTTCTAAATAAAAATGTTGTTGCCGTGGGCCCAGCTT
TAACCGGCCGGCGCACCGCGACATCATTTTTTGGGTCACCGATAAACCAG
TTATCAGACAGTTGCGAGTACAATATGGAAATATTTCGCTCGTTCCGGAT
TTTCCGTATATTGTAAAATATTGTACGGAAAAATCTCGGAACTCGTAAAA
TATTTCTCATATTGTACTCGCAACTGTCCGATAACTATTACGTATTAGAA
AAGTGTCATTTTTTGTGACACATAACTGTCAGAAATGTCATCATGCTCAA
GGTGTGAGAATTTTTAGGTATCAATTTTTTTTTTGAAGCTAATAAAAGTT
AGGAATTTACATAAAATTTCATGGCAAAAGCTCTATTATTTCAGGAGCTA
TTACCATTAATATGACCTCAGAACAGAAATAGCCCACCACCCCCCCCCCC
CCCCCCTAGGACGAATAGACATTTATCAAATTATCTGTCAGTAAAACCCA
CAAAGCGAATAACTTTTGATACAATTTGATTGCGCTTTTGTGGTCGGAAA
TACCTTAAGTGGATAAATTTTGGCGTGGATTTAATTTGGCGAATGACCAA
AATGCGATTTTTGGCGGGGATTTAATTTGGCGACTCGGAAGGCTTTAGTC
TGTGGTGAACTAAAAAAAATACGTGGTAATTTACTAAAAAATATTCTCCT
TAGAATTTCTATCTTAAAAAGATTTTATTAAATTTGACGGGGATTTGGTT
TGGCGAATTTCCGATATTTGAAATTTTGGCGAGAATTTAATTTGGCGATT
TTTGGAAAATTCGCCAAATTTAATCCATGCCAAAATTTATCCACTTAAGG
TAATCGTGAATATAATCATCTACAATTAAAAAAAGGTGTATTTGATTTCC
ATCAATGTCAAAATATGTTGGGATTTCGGAAGGGTCGTACCCACGTGACC
ACTTTTTAATTTTATTGATGGACGTGATAGTCCTTTCGTGAGTGCTATCA
GAACACTGGTCATTATAAAAACCAGGCACGACGGAAGCTTTTTATATCTG
GTACGGCGAATGAGGAAATTTAAGCGATTTTATAGCGATTTGACCGACGA
AGAGGAAAACTTCGGGTATTTTTGTGAAAATCTGGTACGGCGGCCGCCGC
ACCCGCCGGAACCGTTGCGGCGTGGCCGAAAACCCTGGGGGGGAAGGTTT
TTTTTTTTTTTTTTTTAAAAATGGGGGGCCGGCCCCCCCCCCCCCCTGCC
GTACCCGTTGCGTCGTGCCTGAAAACACTGGTCGAGAAGGCTTTAGTCTC
TTTTCATTGTTAAAAGCTTGAGATTACGTACCAAAATCGATTTATTTTGC
AAACTTTTTGATCATGTAATTAGAAAATAGACGATTTCAGCATTTCCTCT
TTAACTCATTGGATCTTCGACTGGGGGGTAGTGGTTTTCAGGCTATATCC
ACAGCCTTATTGGAGTATTTTTGAGCTTCTCATTTTTGAATTCACTTATT
ATGATTTGTGTCATTTTGATTGTTAAACGTTACCAATACAATGAAATTGC
TTGTACATCATTTGCCCTGAGATTTTAAAATAACATATTTCTTTATATCG
TAGCATTTGAATGACGTTTGCGTACTACGCAATATTGTTCGCCAGCTTCA
AACGTCGGGCCGGGTAAGTTTCCTATTCCTATATTGAATGAATTAATTTC
AATCATTTTCTGATATTATTTTTCCGATGAAGAAAAACAAGGTTTTCTGA
AATTGATGAAAAAATTTATCCAACTATGTTTTCCCAGCTGAACAAAAATT
GACAAAGAAAATTTCCTTAGAACGAACCAGCTTTGATCTTGATTTAAAAT
TTCAGGGTGAGATGATTTTGATCAACATTTTTAGCTGGAATACCTATCCC
TTCAGGACAGTGACTCTGTTTATGATAAATTTAATTTAATCTTTAAATAT
ATTTGATTGATAGGAAGACAAAAATGAAAGAAGAAGGCTGTTGAGAGATC
TTCAGGTATATTAATTTTGACTTGTTATAGTATTTGCTCTACAGAAAGAG
GTGTGTGATATTTACTGCCCGGGGGGTGGGGGGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGTACT
AGGGCAAAATGGGTTACGGGGATGCGCCACTGGTCAGCGTACCTTTCTAA
CCTCCACGAGTCCCACGTAGGGTCACAAAAACACCAAAATAGAAAAATCA
GTCGCTCGTAGGGTGCCTTTTTTTTTGGAAAAATTGGGGAAAAAGTAGAA
AATTTAAGAACATTTTGGAATTTCAGTCCCATTTAGGGTGACTTTTTTTG
CAAATTTCGGCAAAATAAAAAAAAACGAGTCCCACGTAGAGTCCATTTTT
CGAACCTCAGCGGAGCACCCCCGTTGGTTGGCAAGGGTAGTACCCGCCCC
CCCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNATTGTCGGATTTTTCATACCAATTTTGAAATACAGGCGGC
AACGAAGCTCGCTTCAAAGAGACAATAAAAGATAGACGTCCAGTCGTTTA
TATGTTCATGGGTTCAGCAAACGTCGCCAGGTTTCCAGGCTAGTGTCAAG
TTTATCGTTTTCTTAGTTCATTTTTCCATGTCTAAATCTGAGAAAATATA
AATTGTCTACATACTTTTGAGACACTATTTAATGTTTTTTCACGCATTGG
TTTCAGGACGAGAGGACGATAAGGAGAAATCTGGAGGTTGAGGTACGTGT
ATAATTTTTATTACACCCCTGTCTCAGTGCCCCGGTAGAACTTTTTTTCC
CCAGTGGAGATGAAAATTTCTATCAAAATGCCAATGGGGATAGAAAATCT
ATTGTTTCCAGCTCGAAAATTCCAGTGGGGATGGTTTTGGAGTGCAATTT
TTTACATTCAGTTTTCAATGGGGATAAAATCATAGAGCAATTTCGCAGTG
GGGTTTTCAAGTTGTAGGATATTTTTTCCACCGGGGACGATTTTTTGGCC
TGTTTTTCCACCGGGGTGGGTCCACCGGGTCTGTGACACAGGGGTGTTTT
ATTAAATGTTACTGACCAAAGTAATCATGGAAGGGTTTGAATCATAACTG
TATTTTTGTCTCGATTTTGAGACAAATTTAGTATTTATAATTGTCTTGTA
ATTTCATTTCGTTTGTTGATTTCAGCATGAAATGACGATCACAGATATGA
GGAGAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040413XLOC_040413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064446-exon-scaffold_415-1575043694:137705..137888TCONS_00064446-exon-scaffold_415-1575043694:137705..137888Clytia hemisphaericaexon
TCONS_00064446-exon-scaffold_415-1575043694:126626..126685TCONS_00064446-exon-scaffold_415-1575043694:126626..126685Clytia hemisphaericaexon
TCONS_00064446-exon-scaffold_415-1575043694:126284..126325TCONS_00064446-exon-scaffold_415-1575043694:126284..126325Clytia hemisphaericaexon
TCONS_00064446-exon-scaffold_415-1575043694:124847..124882TCONS_00064446-exon-scaffold_415-1575043694:124847..124882Clytia hemisphaericaexon
TCONS_00064446-exon-scaffold_415-1575043694:124381..124413TCONS_00064446-exon-scaffold_415-1575043694:124381..124413Clytia hemisphaericaexon
TCONS_00064446-exon-scaffold_415-1510915933:137705..137888TCONS_00064446-exon-scaffold_415-1510915933:137705..137888Clytia hemisphaericaexon
TCONS_00064446-exon-scaffold_415-1510915933:126626..126685TCONS_00064446-exon-scaffold_415-1510915933:126626..126685Clytia hemisphaericaexon
TCONS_00064446-exon-scaffold_415-1510915933:126284..126325TCONS_00064446-exon-scaffold_415-1510915933:126284..126325Clytia hemisphaericaexon
TCONS_00064446-exon-scaffold_415-1510915933:124847..124882TCONS_00064446-exon-scaffold_415-1510915933:124847..124882Clytia hemisphaericaexon
TCONS_00064446-exon-scaffold_415-1510915933:124381..124413TCONS_00064446-exon-scaffold_415-1510915933:124381..124413Clytia hemisphaericaexon
TCONS_00064446-exon-scaffold_415-1491911889:137705..137888TCONS_00064446-exon-scaffold_415-1491911889:137705..137888Clytia hemisphaericaexon
TCONS_00064446-exon-scaffold_415-1491911889:126626..126685TCONS_00064446-exon-scaffold_415-1491911889:126626..126685Clytia hemisphaericaexon
TCONS_00064446-exon-scaffold_415-1491911889:126284..126325TCONS_00064446-exon-scaffold_415-1491911889:126284..126325Clytia hemisphaericaexon
TCONS_00064446-exon-scaffold_415-1491911889:124847..124882TCONS_00064446-exon-scaffold_415-1491911889:124847..124882Clytia hemisphaericaexon
TCONS_00064446-exon-scaffold_415-1491911889:124381..124413TCONS_00064446-exon-scaffold_415-1491911889:124381..124413Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_415supercontigscaffold_415:124381..137888 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.2169	14.387	17.6527	11.7211	0	0	0	0	0	0	0	0	0	0	0.275965	0	0	0	0	0	0.0937842	0	8.13959	8.48093	0	0	0.330454	0.496081	2.41822	1.06748
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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