TCONS_00064521 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064521
Unique NameTCONS_00064521
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length427

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064521 ID=TCONS_00064521|Name=TCONS_00064521|organism=Clytia hemisphaerica|type=transcript|length=427bp
TTAAACGAAAGGAAGAATCTGGGAATTTTGCTCAGGAACATGGAAAGAAT
ATGCCAAATATATCAAACCATCACAGCCCACTTTTAGATTGTAATAAAGC
AGCCaaaattttggttgaaatggaaaaattttCGACCCATGAGAATGAAG
AAAGGTTGAAAATACATACCTGtgattttgcaaataaaaagctTCATGAT
TCCAAAGATTTGGTAGGATTTGTAGTGGAGTTGTTATGCCAGGGTCAGCC
AACCTTTTGTCAATGGTCAGAAATCTTGTAAGGGATTTTAACAGGTTCCG
GCTATTGGTAAGATTCACCACTACGGGTGGGCAGTTCTTCGGACTCCAAg
gaaaatctttgttttgattttgattttggctcTACAGAGCCGGAAGGCAT
TAGTTAGAGCGACGTACTAGAAGTAGA
Run BLAST on NCBI

transcript from alignment at scaffold_418:2955..3381

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064521 ID=TCONS_00064521|Name=TCONS_00064521|organism=Clytia hemisphaerica|type=transcript|length=427bp|location=Sequence derived from alignment at scaffold_418:2955..3381 (Clytia hemisphaerica)
TCTACTTCTAGTACGTCGCTCTAACTAATGCCTTCCGGCTCTGTAgagcc
aaaatcaaaatcaaaacaaagattttccTTGGAGTCCGAAGAACTGCCCA
CCCGTAGTGGTGAATCTTACCAATAGCCGGAACCTGTTAAAATCCCTTAC
AAGATTTCTGACCATTGACAAAAGGTTGGCTGACCCTGGCATAACAACTC
CACTACAAATCCTACCAAATCTTTGGAATCATGAagctttttatttgcaa
aatcaCAGGTATGTATTTTCAACCTTTCTTCATTCTCATGGGTCGaaaat
ttttccatttcaaccaaaattttGGCTGCTTTATTACAATCTAAAAGTGG
GCTGTGATGGTTTGATATATTTGGCATATTCTTTCCATGTTCCTGAGCAA
AATTCCCAGATTCTTCCTTTCGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040464XLOC_040464Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064521-exon-scaffold_418-1491911889:2955..3381TCONS_00064521-exon-scaffold_418-1491911889:2955..3381Clytia hemisphaericaexon
TCONS_00064521-exon-scaffold_418-1510915933:2955..3381TCONS_00064521-exon-scaffold_418-1510915933:2955..3381Clytia hemisphaericaexon
TCONS_00064521-exon-scaffold_418-1575043694:2955..3381TCONS_00064521-exon-scaffold_418-1575043694:2955..3381Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:2955..3381 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
80.1927	78.9483	102.447	80.5226	2.23024	2.29979	2.346	2.79301	64.9338	65.5561	94.6373	111.5	92.8363	75.5557	78.7919	71.1381	58.3468	72.95	52.9858	77.6261	222.391	206.143	100.373	135.9	1.79414	3.20414	164.886	170.458	93.757	101.052
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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