|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064529 ID=TCONS_00064529|Name=TCONS_00064529|organism=Clytia hemisphaerica|type=transcript|length=1376bp
TGCGTTTGTTAAAGTGAATACAATGATATATCACATAGTCCAGTTCTGtt
cttttaattaaaatttttttgataattttattttccaaggaaagtttttt
tctaagttatataaaaattgaaaatattgaaaaatcgaGATGAGATATTT
GGTTGgtaattttttgatgaattgTATGTTCAACTCAATACTTgtcattt
taacattttcaacgGAGGTCTGGGCTCTATGTAACCATGCTACTGAGTAT
AAATACACATGCAGAAAAATACCGAGTTATAACTCGTACCAATGGGCCAG
GTGTTATAAAAACtctgaaatcaaaacatttggcaAGAACCATACAAACG
GTTGCTTTGATGATAGCAGACAGTTTTGTTATTACCCTTGCCAAATGGAA
CGTCATGAGCAATTTTACGGATCTGTGAGCAAAGACTGTAAATGTGCCTT
AATGGGCCACCCACCGCCTTGTAACGAGAGAACGCGCGGGCAACAAACAT
GTCGCTCCGTCGAAGGTTATTTCGGGTTCACTAAAATGACTTGTTGGGAT
AAAAAATATATCAGACGTATCACAGGTAATTCGTACCCCTGTGGTGCTGA
GTTTTGTTGGTTGCCATGTGAACGAGAGAAAAACCAGAAATCGAATGGAG
ACGTTTCACCCGAGTGTTCGTGTACTTATTCCAATGCTTGCAGGAGAGGA
GGAAATTTGAAGTtattgtttctgacatttttgTTTGGGTTCTATGTGTA
TAATTCTTGACTGAAAACCATCATCGTCACCAGTCGTCTAATGACAAGGA
AATAGCTCGTATACAAACCAAtggaaattgagtaatttccgCTCACCAAT
TAAGTCAATGCTACCAAGAAATTTGATTGCATGGAAACTCAAGAGCATGG
GTGAAATATTACACGTGgttcagtagcgtagacaggaggggcgcaaattt
tgtgtaggagagcagatttttacgacactgtaattatctattcatattat
aaaaagataattactgtgtcataaaaatctactctcctacacaaattttg
cgcccctcttgtctacACTACTACTAGTTGAGTGAAAGTCAAAATGTTAC
AAGACTGAGAGAGAATATTAGAGTTTAATAGAAACATGAATTTGTAGAAA
TGTTGAGTCTGCGTTTACAATAAGTGTGCGCTTTTATTAcacatttcttt
ataagaacatccaaaacttttgaagccttcggatgtttttaactttttga
gttttaagcctaaagattttcttaacatgttcttatttcctccatttctt
gagtatttttgtcctttttcctaagaaattgggtctgcgaagccttaaaa
tgttcttagcttgttcttaaaatttt Run BLAST on NCBI protein sequence of TCONS_00064529-protein >TCONS_00064529-protein ID=TCONS_00064529-protein|Name=TCONS_00064529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MRYLVGNFLMNCMFNSILVILTFSTEVWALCNHATEYKYTCRKIPSYNSY
QWARCYKNSEIKTFGKNHTNGCFDDSRQFCYYPCQMERHEQFYGSVSKDC
KCALMGHPPPCNERTRGQQTCRSVEGYFGFTKMTCWDKKYIRRITGNSYP
CGAEFCWLPCEREKNQKSNGDVSPECSCTYSNACRRGGNLKLLFLTFLFG
FYVYNS Run BLAST on NCBI transcript from alignment at scaffold_418:83728..85103 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064529 ID=TCONS_00064529|Name=TCONS_00064529|organism=Clytia hemisphaerica|type=transcript|length=1376bp|location=Sequence derived from alignment at scaffold_418:83728..85103 (Clytia hemisphaerica)
aaaattttaagaacaagctaagaacattttaaggcttcgcagacccaatt
tcttaggaaaaaggacaaaaatactcaagaaatggaggaaataagaacat
gttaagaaaatctttaggcttaaaactcaaaaagttaaaaacatccgaag
gcttcaaaagttttggatgttcttataaagaaatgtgTAATAAAAGCGCA
CACTTATTGTAAACGCAGACTCAACATTTCTACAAATTCATGTTTCTATT
AAACTCTAATATTCTCTCTCAGTCTTGTAACATTTTGACTTTCACTCAAC
TAGTAGTAGTgtagacaagaggggcgcaaaatttgtgtaggagagtagat
ttttatgacacagtaattatctttttataatatgaatagataattacagt
gtcgtaaaaatctgctctcctacacaaaatttgcgcccctcctgtctacg
ctactgaacCACGTGTAATATTTCACCCATGCTCTTGAGTTTCCATGCAA
TCAAATTTCTTGGTAGCATTGACTTAATTGGTGAGcggaaattactcaat
ttccaTTGGTTTGTATACGAGCTATTTCCTTGTCATTAGACGACTGGTGA
CGATGATGGTTTTCAGTCAAGAATTATACACATAGAACCCAAAcaaaaat
gtcagaaacaataACTTCAAATTTCCTCCTCTCCTGCAAGCATTGGAATA
AGTACACGAACACTCGGGTGAAACGTCTCCATTCGATTTCTGGTTTTTCT
CTCGTTCACATGGCAACCAACAAAACTCAGCACCACAGGGGTACGAATTA
CCTGTGATACGTCTGATATATTTTTTATCCCAACAAGTCATTTTAGTGAA
CCCGAAATAACCTTCGACGGAGCGACATGTTTGTTGCCCGCGCGTTCTCT
CGTTACAAGGCGGTGGGTGGCCCATTAAGGCACATTTACAGTCTTTGCTC
ACAGATCCGTAAAATTGCTCATGACGTTCCATTTGGCAAGGGTAATAACA
AAACTGTCTGCTATCATCAAAGCAACCGTTTGTATGGTTCTtgccaaatg
ttttgatttcagaGTTTTTATAACACCTGGCCCATTGGTACGAGTTATAA
CTCGGTATTTTTCTGCATGTGTATTTATACTCAGTAGCATGGTTACATAG
AGCCCAGACCTCcgttgaaaatgttaaaatgacAAGTATTGAGTTGAACA
TAcaattcatcaaaaaattacCAACCAAATATCTCATCtcgatttttcaa
tattttcaatttttatataacttagaaaaaaactttccttggaaaataaa
attatcaaaaaaattttaattaaaagaaCAGAACTGGACTATGTGATATA
TCATTGTATTCACTTTAACAAACGCA Coding sequence (CDS) from alignment at scaffold_418:83728..85103 >TCONS_00064529 ID=TCONS_00064529|Name=TCONS_00064529|organism=Clytia hemisphaerica|type=CDS|length=621bp|location=Sequence derived from alignment at scaffold_418:83728..85103 (Clytia hemisphaerica)
TCAAGAATTATACACATAGAACCCAAAcaaaaatgtcagaaacaataACT
TCAAATTTCCTCCTCTCCTGCAAGCATTGGAATAAGTACACGAACACTCG
GGTGAAACGTCTCCATTCGATTTCTGGTTTTTCTCTCGTTCACATGGCAA
CCAACAAAACTCAGCACCACAGGGGTACGAATTACCTGTGATACGTCTGA
TATATTTTTTATCCCAACAAGTCATTTTAGTGAACCCGAAATAACCTTCG
ACGGAGCGACATGTTTGTTGCCCGCGCGTTCTCTCGTTACAAGGCGGTGG
GTGGCCCATTAAGGCACATTTACAGTCTTTGCTCACAGATCCGTAAAATT
GCTCATGACGTTCCATTTGGCAAGGGTAATAACAAAACTGTCTGCTATCA
TCAAAGCAACCGTTTGTATGGTTCTtgccaaatgttttgatttcagaGTT
TTTATAACACCTGGCCCATTGGTACGAGTTATAACTCGGTATTTTTCTGC
ATGTGTATTTATACTCAGTAGCATGGTTACATAGAGCCCAGACCTCcgtt
gaaaatgttaaaatgacAAGTATTGAGTTGAACATAcaattcatcaaaaa
attacCAACCAAATATCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064529-exon-scaffold_418-1491911889:83728..85103 | TCONS_00064529-exon-scaffold_418-1491911889:83728..85103 | Clytia hemisphaerica | exon |
| TCONS_00064529-exon-scaffold_418-1510915933:83728..85103 | TCONS_00064529-exon-scaffold_418-1510915933:83728..85103 | Clytia hemisphaerica | exon |
| TCONS_00064529-exon-scaffold_418-1575043694:83728..85103 | TCONS_00064529-exon-scaffold_418-1575043694:83728..85103 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_418 | supercontig | scaffold_418:83728..85103 . |
Blast
The following BLAST results are available for this feature:
|
