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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064535 ID=TCONS_00064535|Name=TCONS_00064535|organism=Clytia hemisphaerica|type=transcript|length=1643bp
AGGAGGGGGTCAAAAGTTCTTAAAAgatgctttttgaaaaattcgattAA
TTGTAATAAAcaaagtcataaaaaagttAGAAGGTTGAGAGtcataattt
aatttttctttaacataaaataattcaaatataGATAATTTTCTATGTAG
agctaaaaaaactttaaaataataaTGTAAAAAGGCAGCCTTGTGACGAC
TCATTTTTATactcaaacaaaataaaaattgttctttaagtataaaaaga
aaatgagaaaactACTACTAATACTTCAAAAGAAACCTATCAAGGGAACC
TATTTGGCTAAAACTTGAAACAAACACAATTATGTAACAATCAACATGAA
ATAAATTGAAGCCTTGACTCTTATACtcatttctattttaaattcctcAA
TCAAACAGGGTCCAAACCTCGTAGTTTAATGTCCTTTATTGCGTTCTTTA
TCCCTTCCTTATCAAACAGTTTATTTTGGGTTGAATTTACTGATTGAGAC
TTTGTACATTTGTGAGCATGCTTGCCACTCTCGTGTTTTGATTCTGGAAG
TAGTTTATCTTGCTTCAAATCTTTATTAGGCTCGAGTAGCACAATATGTC
TGTAGATGAAAACTGACGTTGCACATGTTGAGAAATCATACAACAATTTC
TCCTTCAttttactttgttttgatttgatttcttcATGAAGTTCTGGAAA
CATATGCTTCTCTTGTGAATACAAAATCTCCACGATATCATTACGACCCT
TCAAACATTGCTTTGTCCAATAACATTTAGATAATAATTGGACATGTAAA
TAACGTTCAAGATCTCTCTCAATATCAGTATTTCCATCACAAGATTCAAT
GTTTTTCCCAATGTACAAAGAGCCACCAGCTTTGAGCATCGGAATCATTT
GTCGAATAGTCTTGCATTGATACTCCGGTGAATAAACTGATAACACACCA
TCAATAATAGCATGGTCAAATTTAACATTGTCAAACTTGAGGTTTTGTAG
TTCGTAAGGTATAGCTGTGGAGAAATTACCTTTTACGAGTTTGGAGACAT
ATTCTACAGCTTCCCTGTCTTGATCAACTCCAAAGAGTTTGATGTTTGGA
AATGTTTGTTTCAAAGCTACCAACCATTCACCACAGTGTATACCATTCAA
AAATACTGTTTCTCCATCTTTGATATTCAGTTGCTTAGCAACTTCATTGA
CTGGTGGATATTTACTGTTTTTATCATTGTTGAGGTCTTTGCAATATCTG
TCTTCGTATGAAACACCTAAAACCTCTCCCTGAAGCCAAGCACTGAATGA
AAATCTGCGTTTCTCACTACTCAGCCCATTTAAAGTCCTTGTTGAAAGGT
AAAGAACAACAATagcaaaaaacaatgaaaatatcaacaatCTCCATGGG
CGTATTTTCCATTGCATCtttatgataaatttttttgctaaataaaaata
aaggacAATATATATTATCAAAGTAGAGATTAGAAAACAAGATAGCAGCT
GTCTATAATCCCAGGCAAAAACTGTTTCACAGGACATAATTTTCATAAAT
TGATAAAATGATAAAGGTCAGAATATATCTTAAGGAGTCATGAATCACAA
GCGAATTTAGAAAGATAGTTAgagtcaattttaattttaatta Run BLAST on NCBI protein sequence of TCONS_00064535-protein >TCONS_00064535-protein ID=TCONS_00064535-protein|Name=TCONS_00064535-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp
MKIMSCETVFAWDYRQLLSCFLISTLIIYIVLYFYLAKKFIIKMQWKIRP
WRLLIFSLFFAIVVLYLSTRTLNGLSSEKRRFSFSAWLQGEVLGVSYEDR
YCKDLNNDKNSKYPPVNEVAKQLNIKDGETVFLNGIHCGEWLVALKQTFP
NIKLFGVDQDREAVEYVSKLVKGNFSTAIPYELQNLKFDNVKFDHAIIDG
VLSVYSPEYQCKTIRQMIPMLKAGGSLYIGKNIESCDGNTDIERDLERYL
HVQLLSKCYWTKQCLKGRNDIVEILYSQEKHMFPELHEEIKSKQSKMKEK
LLYDFSTCATSVFIYRHIVLLEPNKDLKQDKLLPESKHESGKHAHKCTKS
QSVNSTQNKLFDKEGIKNAIKDIKLRGLDPV Run BLAST on NCBI transcript from alignment at scaffold_418:231897..233539 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064535 ID=TCONS_00064535|Name=TCONS_00064535|organism=Clytia hemisphaerica|type=transcript|length=1643bp|location=Sequence derived from alignment at scaffold_418:231897..233539 (Clytia hemisphaerica)
taattaaaattaaaattgactcTAACTATCTTTCTAAATTCGCTTGTGAT
TCATGACTCCTTAAGATATATTCTGACCTTTATCATTTTATCAATTTATG
AAAATTATGTCCTGTGAAACAGTTTTTGCCTGGGATTATAGACAGCTGCT
ATCTTGTTTTCTAATCTCTACTTTGATAATATATATTgtcctttattttt
atttagcaaaaaaatttatcataaaGATGCAATGGAAAATACGCCCATGG
AGattgttgatattttcattgttttttgctATTGTTGTTCTTTACCTTTC
AACAAGGACTTTAAATGGGCTGAGTAGTGAGAAACGCAGATTTTCATTCA
GTGCTTGGCTTCAGGGAGAGGTTTTAGGTGTTTCATACGAAGACAGATAT
TGCAAAGACCTCAACAATGATAAAAACAGTAAATATCCACCAGTCAATGA
AGTTGCTAAGCAACTGAATATCAAAGATGGAGAAACAGTATTTTTGAATG
GTATACACTGTGGTGAATGGTTGGTAGCTTTGAAACAAACATTTCCAAAC
ATCAAACTCTTTGGAGTTGATCAAGACAGGGAAGCTGTAGAATATGTCTC
CAAACTCGTAAAAGGTAATTTCTCCACAGCTATACCTTACGAACTACAAA
ACCTCAAGTTTGACAATGTTAAATTTGACCATGCTATTATTGATGGTGTG
TTATCAGTTTATTCACCGGAGTATCAATGCAAGACTATTCGACAAATGAT
TCCGATGCTCAAAGCTGGTGGCTCTTTGTACATTGGGAAAAACATTGAAT
CTTGTGATGGAAATACTGATATTGAGAGAGATCTTGAACGTTATTTACAT
GTCCAATTATTATCTAAATGTTATTGGACAAAGCAATGTTTGAAGGGTCG
TAATGATATCGTGGAGATTTTGTATTCACAAGAGAAGCATATGTTTCCAG
AACTTCATgaagaaatcaaatcaaaacaaagtaaaaTGAAGGAGAAATTG
TTGTATGATTTCTCAACATGTGCAACGTCAGTTTTCATCTACAGACATAT
TGTGCTACTCGAGCCTAATAAAGATTTGAAGCAAGATAAACTACTTCCAG
AATCAAAACACGAGAGTGGCAAGCATGCTCACAAATGTACAAAGTCTCAA
TCAGTAAATTCAACCCAAAATAAACTGTTTGATAAGGAAGGGATAAAGAA
CGCAATAAAGGACATTAAACTACGAGGTTTGGACCCTGTTTGATTgagga
atttaaaatagaaatgaGTATAAGAGTCAAGGCTTCAATTTATTTCATGT
TGATTGTTACATAATTGTGTTTGTTTCAAGTTTTAGCCAAATAGGTTCCC
TTGATAGGTTTCTTTTGAAGTATTAGTAGTagttttctcattttcttttt
atacttaaagaacaatttttattttgtttgagtATAAAAATGAGTCGTCA
CAAGGCTGCCTTTTTACAttattattttaaagtttttttagctCTACATA
GAAAATTATCtatatttgaattattttatgttaaagaaaaattaaattat
gaCTCTCAACCTTCTaacttttttatgactttgTTTATTACAATTaatcg
aatttttcaaaaagcatcTTTTAAGAACTTTTGACCCCCTCCT Coding sequence (CDS) from alignment at scaffold_418:231897..233539 >TCONS_00064535 ID=TCONS_00064535|Name=TCONS_00064535|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_418:231897..233539 (Clytia hemisphaerica)
ATGAAAATTATGTCCTGTGAAACAGTTTTTGCCTGGGATTATAGACAGCT
GCTATCTTGTTTTCTAATCTCTACTTTGATAATATATATTgtcctttatt
tttatttagcaaaaaaatttatcataaaGATGCAATGGAAAATACGCCCA
TGGAGattgttgatattttcattgttttttgctATTGTTGTTCTTTACCT
TTCAACAAGGACTTTAAATGGGCTGAGTAGTGAGAAACGCAGATTTTCAT
TCAGTGCTTGGCTTCAGGGAGAGGTTTTAGGTGTTTCATACGAAGACAGA
TATTGCAAAGACCTCAACAATGATAAAAACAGTAAATATCCACCAGTCAA
TGAAGTTGCTAAGCAACTGAATATCAAAGATGGAGAAACAGTATTTTTGA
ATGGTATACACTGTGGTGAATGGTTGGTAGCTTTGAAACAAACATTTCCA
AACATCAAACTCTTTGGAGTTGATCAAGACAGGGAAGCTGTAGAATATGT
CTCCAAACTCGTAAAAGGTAATTTCTCCACAGCTATACCTTACGAACTAC
AAAACCTCAAGTTTGACAATGTTAAATTTGACCATGCTATTATTGATGGT
GTGTTATCAGTTTATTCACCGGAGTATCAATGCAAGACTATTCGACAAAT
GATTCCGATGCTCAAAGCTGGTGGCTCTTTGTACATTGGGAAAAACATTG
AATCTTGTGATGGAAATACTGATATTGAGAGAGATCTTGAACGTTATTTA
CATGTCCAATTATTATCTAAATGTTATTGGACAAAGCAATGTTTGAAGGG
TCGTAATGATATCGTGGAGATTTTGTATTCACAAGAGAAGCATATGTTTC
CAGAACTTCATgaagaaatcaaatcaaaacaaagtaaaaTGAAGGAGAAA
TTGTTGTATGATTTCTCAACATGTGCAACGTCAGTTTTCATCTACAGACA
TATTGTGCTACTCGAGCCTAATAAAGATTTGAAGCAAGATAAACTACTTC
CAGAATCAAAACACGAGAGTGGCAAGCATGCTCACAAATGTACAAAGTCT
CAATCAGTAAATTCAACCCAAAATAAACTGTTTGATAAGGAAGGGATAAA
GAACGCAATAAAGGACATTAAACTACGAGGTTTGGACCCTGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064535-exon-scaffold_418-1491911889:231897..233539 | TCONS_00064535-exon-scaffold_418-1491911889:231897..233539 | Clytia hemisphaerica | exon |
| TCONS_00064535-exon-scaffold_418-1510915933:231897..233539 | TCONS_00064535-exon-scaffold_418-1510915933:231897..233539 | Clytia hemisphaerica | exon |
| TCONS_00064535-exon-scaffold_418-1575043694:231897..233539 | TCONS_00064535-exon-scaffold_418-1575043694:231897..233539 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_418 | supercontig | scaffold_418:231897..233539 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029063 | SAM-dependent_MTases |
Blast
The following BLAST results are available for this feature:
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