Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064552 ID=TCONS_00064552|Name=TCONS_00064552|organism=Clytia hemisphaerica|type=transcript|length=517bp aaaatttctgacattaaGGTAATaaggtaataataataataatacattAT CAATATTATCAATACCCATGGACAAAACATCATGATTTCTCCCCCATGGA CAAACAAGGACCCTTCTCCAACCCCTGGACAAATGACACGACCGACCCAT GGACATTCTCTCCAACAGTCAGGTCTCCCCCATGGACAACACATATGTTC TCTTCCCCATGGACAACATGTCCTCACGGTTCTTCCCATGGAAAACAGCA GGGGATGGAAAACAGGAAAACAACATGTCCTCTGCAACATGTCCTCGGGT CTAAAGGTCTCCAGGTCACCCCATGGACAACCATGTCCTCATGTTCTCCC CATGGACAGCAAAAAATATACCCTTGGACAAAtggtatttaccccctgga caaatgATATCTACCCCTTGGACAATTGTTTTCTACCCCATGGACAAAGC GAGTCATGAACCCCCTGGacattatatcctccaccccccatgtacggact ttttctggaagagccca Run BLAST on NCBI transcript from alignment at scaffold_419:207..6123- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064552 ID=TCONS_00064552|Name=TCONS_00064552|organism=Clytia hemisphaerica|type=transcript|length=5917bp|location=Sequence derived from alignment at scaffold_419:207..6123- (Clytia hemisphaerica) AAAATTTCTGACATTAAGGTAATAAGGTAATAATAATAATAATACATTAT
CAATATTATCAATACCCATGGACAAAACATCATGATTTCTCCCCCATGGA
CAAACAAGGACCCTTCTCCAACCCCTGGACAAATGACACGACCGACCCAT
GGACATTCTCTCCAACAGTCAGGTCTCCCCCATGGACAACACATATGTTC
TCTTCCCCATGGACAACATGTCCTCACGGTTCTTCCCATGGAAAACAGCA
GGGGATGGAAAACAGGAAAACAACATGTCCTCTGCAACATGTCCTCGGGT
CTAAAGGTCTCCAGGTCACCCCATGGACAACCATGTCCTCATGTTCTCCC
CATGGACATATCACGTATCACCCACCACCCTAGGACAAATTAGTCTAATT
CAACCCATGGACAGCAAAAAATATACCCTTGGACAAATGGTATTTACCCC
CTGGACNNNNNNNNNNNNNTTTCTACCCCATGGACAAAGCGAGTCATGAA
CCCCCTGGACATTATATCCTCCACCCCCCATGTACGGACTTTTTCTGGAA
GAGCCCATTCTTGCACTTTCATTTTTAAATGGTATGTGTCTGATTCATAC
ATTGAACAGCTTGAGCATGGAGTGGTAGGAGGGGAAGCAGATCTGGAACA
AAAATATACTTAGATAATTAGAAAATATGGACTGAAACAAAATCTATATT
AGCCCACAGTTAAGAATTTCACAAGCAAGGAAGAAGATAAAGTGTCAATG
TCAAAGCAGCCTTGAGATCGGTATAGAGAATCATTCGAATTAGAGAGAGC
GATCAATAAAGAAAATCATTCGAATGAGAGAGAGAGAGAGAGTGATCGTT
ATTGTGATCTCAGGTTGGAAAATCTTAGCACTGAAAAAGTTAGAGAAAAG
CCGTTTTAACCAATATTTCCTTTAACAGGAGGAAAACATGAAACAAAAGT
GACGAGTGTGAAAAGAGCTTAAACCAACAATGTTTGAAGAGACTGAGAGA
GAAAAAAGAAAAAGTATTAGACGATCATGTTTATTTAACGCATCAATAGC
TCTATTTATTTGATTTGATCACGCTATGAATATTATAGTGGTTTCCACAT
TCCAAGACGTTTCCGCATAGCGATATTAACAGCCCCTATATCATCACCTT
TTTTTTACAAGCAACCCAAATTTTGGAAATGATGGAGTGTGCTTTTTTTT
TCTTGCAAATGTTTTATTTACTCGCATGTGGAGAAAAATGCTATTATATC
ACTCTTCAAAATTGTGTTTGTTTAGCATACTTTCTGGACATTACAGATCA
AACAGATCAAATAAATAGTATTATGCATACTAAAGTTTGTTTGTCTAAGA
GGTTTTCTGAATGTTTAAAAGATCAAATACATAGTCTTATCCATATTAAA
TTAGTGGAGAAAAAGTTTGTTTGTCTAGTAGGCTTTCTGGGCGTTGAAGA
TCAAATAAATAGTGTTTTGCATATTAAATGAGTTTATTAATAGAATGAAA
ATGCAGTTGATTCTTAGATAAAAAATATCACAAAGTAAACACAACTAACA
AACTCACGCCATCAGCTTTTTGTAATTAATGAGGGTGTGGTATGAATAGT
AACACATGTCCAGTGAAAGAGAGAAAGAACATATAGAGAAAGATGTGGGG
CAAGATACTTTCTTTAACACTAAAGCCTTGTGTCCACTCCGGATAGTTTT
CAACGGATCGGTTTGGATCGGAATATTTTGGAAAACCGAACCGGACAGTT
TTGCAATATCCACTTCAAATTTTCTGAACCAGATTCTTTCTGTTTACAAT
ATTTATACAATGAACATTTAATTAGTTTAATCTTCTACAGATGTTCTATT
GTCTAAAATCAATAGAACCGTTTCGATCCGGCACGGATCACAAAAAAAGT
TGAAAAAATCCAACTTTTTTTCTATCCGTTTGGACCAAAAACACGTGAAC
ATTCGAACCGTTCACGTGAAACAAATATGAAGCAAATGGGTTGAAGATAA
TCCCCAGAACAATAGAAAGCGTTCCGAACCGTACCGATCTGTTGAAAACT
ATCCGGAGTGGACACATGGCTTAGAGAAATGAAATTTTTTCCTCCTAATT
TTCTTGAATTCCTAATTCTTTTGATTCGTGATTTTTTTCATCTGAGCCAA
AACTAACTCGTGAATCACGAGTCGTTAATTCAAACCCTGGTTGAATTAAC
ACTGTTTCCATTGTATTTTTCAGAAAATCCCATCATGTCTTGTAATTTTG
AAGGAAAACGAACACATCATGCCTTTTATTTTAGGAGAATGAACATTACA
TCTCTTATATTTTAATTAGAAAATAAACCAGCTGCGCTGGAAGGTCAGCC
CAATAAGCTTAAAGGGATTATACGGTGTTATATACACCCGACTCGTCTGA
AACTGATGTCAGCAAAATTTTAATAAAAGAGTCCTTTCAAATTTGTAAAT
AAAAGGAAGAAAAAAATCTTGCTCCACATTTTTCTTTATTCATTACAAAA
GATTCTATTTATTTCAATCTGCTGAATCGACATACATTATAACTATGTAA
AAGGTCAATGGCTTTAAAACGATCAGAAGGAAGTACAATCAAGAAACCTA
ATTCGATGTTAAAGCCAAAGAGGTTGAAAAGCTCATTTTGGTTGAACTTC
AGACAAAAAAAAGTTTAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATCCCACTAAA
TACGAAAAAATTTGTGAATGGTCTAACTTGCGAACTTTTCTGGTCGCTAA
AATTTCTGACATTAAGGTAATAAGGTAATAATAATAATAATAATAATAAT
GCGTTATCAATATTATCAATACCCATGGACAAAACATCCTGATTTCTTCC
CCATGGACAAACAAGGACCCTTCTCCAACCCCTGGACAAATGACACGACC
GACCCATGGACATTCTCTCCAACAGTCAGGTCTCCCCCATGGACAACACA
TATGTTCTCTCCCCCATGGACAACATGTCCTCTGCAACATGTCCTCGGGT
CTAAGGTCTCCAGAGGTCTCCCCATGGACAACCATGTCCTCATGTTCTCC
CCATGGACATATCACCCAACACCCCTAGGACAAATTAGTCTAATTCAACC
CATGGACAGCAAAAAATATACCCTTGGACAAATGGTATTTACCCCCTGGA
CAAATGATATCTACCCCTTGGACAATTGTTTTCTACCCCATGGACAAAGC
GAGTCATGAACCCCCTGGACATTATATCCTCCACCCCCCATGTACGGACT
TTTTCTGGAAGAGCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00064552-exon-scaffold_419-1575043694:5767..6123 | TCONS_00064552-exon-scaffold_419-1575043694:5767..6123 | Clytia hemisphaerica | exon |
TCONS_00064552-exon-scaffold_419-1575043694:207..366 | TCONS_00064552-exon-scaffold_419-1575043694:207..366 | Clytia hemisphaerica | exon |
TCONS_00064552-exon-scaffold_419-1510915933:5767..6123 | TCONS_00064552-exon-scaffold_419-1510915933:5767..6123 | Clytia hemisphaerica | exon |
TCONS_00064552-exon-scaffold_419-1510915933:207..366 | TCONS_00064552-exon-scaffold_419-1510915933:207..366 | Clytia hemisphaerica | exon |
TCONS_00064552-exon-scaffold_419-1491911889:5767..6123 | TCONS_00064552-exon-scaffold_419-1491911889:5767..6123 | Clytia hemisphaerica | exon |
TCONS_00064552-exon-scaffold_419-1491911889:207..366 | TCONS_00064552-exon-scaffold_419-1491911889:207..366 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_419 | supercontig | scaffold_419:207..6123 - |
Blast
The following BLAST results are available for this feature:
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