TCONS_00064552 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064552
Unique NameTCONS_00064552
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064552 ID=TCONS_00064552|Name=TCONS_00064552|organism=Clytia hemisphaerica|type=transcript|length=517bp
aaaatttctgacattaaGGTAATaaggtaataataataataatacattAT
CAATATTATCAATACCCATGGACAAAACATCATGATTTCTCCCCCATGGA
CAAACAAGGACCCTTCTCCAACCCCTGGACAAATGACACGACCGACCCAT
GGACATTCTCTCCAACAGTCAGGTCTCCCCCATGGACAACACATATGTTC
TCTTCCCCATGGACAACATGTCCTCACGGTTCTTCCCATGGAAAACAGCA
GGGGATGGAAAACAGGAAAACAACATGTCCTCTGCAACATGTCCTCGGGT
CTAAAGGTCTCCAGGTCACCCCATGGACAACCATGTCCTCATGTTCTCCC
CATGGACAGCAAAAAATATACCCTTGGACAAAtggtatttaccccctgga
caaatgATATCTACCCCTTGGACAATTGTTTTCTACCCCATGGACAAAGC
GAGTCATGAACCCCCTGGacattatatcctccaccccccatgtacggact
ttttctggaagagccca
Run BLAST on NCBI

transcript from alignment at scaffold_419:207..6123-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064552 ID=TCONS_00064552|Name=TCONS_00064552|organism=Clytia hemisphaerica|type=transcript|length=5917bp|location=Sequence derived from alignment at scaffold_419:207..6123- (Clytia hemisphaerica)
AAAATTTCTGACATTAAGGTAATAAGGTAATAATAATAATAATACATTAT CAATATTATCAATACCCATGGACAAAACATCATGATTTCTCCCCCATGGA CAAACAAGGACCCTTCTCCAACCCCTGGACAAATGACACGACCGACCCAT GGACATTCTCTCCAACAGTCAGGTCTCCCCCATGGACAACACATATGTTC TCTTCCCCATGGACAACATGTCCTCACGGTTCTTCCCATGGAAAACAGCA GGGGATGGAAAACAGGAAAACAACATGTCCTCTGCAACATGTCCTCGGGT CTAAAGGTCTCCAGGTCACCCCATGGACAACCATGTCCTCATGTTCTCCC CATGGACATATCACGTATCACCCACCACCCTAGGACAAATTAGTCTAATT CAACCCATGGACAGCAAAAAATATACCCTTGGACAAATGGTATTTACCCC CTGGACNNNNNNNNNNNNNTTTCTACCCCATGGACAAAGCGAGTCATGAA CCCCCTGGACATTATATCCTCCACCCCCCATGTACGGACTTTTTCTGGAA GAGCCCATTCTTGCACTTTCATTTTTAAATGGTATGTGTCTGATTCATAC ATTGAACAGCTTGAGCATGGAGTGGTAGGAGGGGAAGCAGATCTGGAACA AAAATATACTTAGATAATTAGAAAATATGGACTGAAACAAAATCTATATT AGCCCACAGTTAAGAATTTCACAAGCAAGGAAGAAGATAAAGTGTCAATG TCAAAGCAGCCTTGAGATCGGTATAGAGAATCATTCGAATTAGAGAGAGC GATCAATAAAGAAAATCATTCGAATGAGAGAGAGAGAGAGAGTGATCGTT ATTGTGATCTCAGGTTGGAAAATCTTAGCACTGAAAAAGTTAGAGAAAAG CCGTTTTAACCAATATTTCCTTTAACAGGAGGAAAACATGAAACAAAAGT GACGAGTGTGAAAAGAGCTTAAACCAACAATGTTTGAAGAGACTGAGAGA GAAAAAAGAAAAAGTATTAGACGATCATGTTTATTTAACGCATCAATAGC TCTATTTATTTGATTTGATCACGCTATGAATATTATAGTGGTTTCCACAT TCCAAGACGTTTCCGCATAGCGATATTAACAGCCCCTATATCATCACCTT TTTTTTACAAGCAACCCAAATTTTGGAAATGATGGAGTGTGCTTTTTTTT TCTTGCAAATGTTTTATTTACTCGCATGTGGAGAAAAATGCTATTATATC ACTCTTCAAAATTGTGTTTGTTTAGCATACTTTCTGGACATTACAGATCA AACAGATCAAATAAATAGTATTATGCATACTAAAGTTTGTTTGTCTAAGA GGTTTTCTGAATGTTTAAAAGATCAAATACATAGTCTTATCCATATTAAA TTAGTGGAGAAAAAGTTTGTTTGTCTAGTAGGCTTTCTGGGCGTTGAAGA TCAAATAAATAGTGTTTTGCATATTAAATGAGTTTATTAATAGAATGAAA ATGCAGTTGATTCTTAGATAAAAAATATCACAAAGTAAACACAACTAACA AACTCACGCCATCAGCTTTTTGTAATTAATGAGGGTGTGGTATGAATAGT AACACATGTCCAGTGAAAGAGAGAAAGAACATATAGAGAAAGATGTGGGG CAAGATACTTTCTTTAACACTAAAGCCTTGTGTCCACTCCGGATAGTTTT CAACGGATCGGTTTGGATCGGAATATTTTGGAAAACCGAACCGGACAGTT TTGCAATATCCACTTCAAATTTTCTGAACCAGATTCTTTCTGTTTACAAT ATTTATACAATGAACATTTAATTAGTTTAATCTTCTACAGATGTTCTATT GTCTAAAATCAATAGAACCGTTTCGATCCGGCACGGATCACAAAAAAAGT TGAAAAAATCCAACTTTTTTTCTATCCGTTTGGACCAAAAACACGTGAAC ATTCGAACCGTTCACGTGAAACAAATATGAAGCAAATGGGTTGAAGATAA TCCCCAGAACAATAGAAAGCGTTCCGAACCGTACCGATCTGTTGAAAACT ATCCGGAGTGGACACATGGCTTAGAGAAATGAAATTTTTTCCTCCTAATT TTCTTGAATTCCTAATTCTTTTGATTCGTGATTTTTTTCATCTGAGCCAA AACTAACTCGTGAATCACGAGTCGTTAATTCAAACCCTGGTTGAATTAAC ACTGTTTCCATTGTATTTTTCAGAAAATCCCATCATGTCTTGTAATTTTG AAGGAAAACGAACACATCATGCCTTTTATTTTAGGAGAATGAACATTACA TCTCTTATATTTTAATTAGAAAATAAACCAGCTGCGCTGGAAGGTCAGCC CAATAAGCTTAAAGGGATTATACGGTGTTATATACACCCGACTCGTCTGA AACTGATGTCAGCAAAATTTTAATAAAAGAGTCCTTTCAAATTTGTAAAT AAAAGGAAGAAAAAAATCTTGCTCCACATTTTTCTTTATTCATTACAAAA GATTCTATTTATTTCAATCTGCTGAATCGACATACATTATAACTATGTAA AAGGTCAATGGCTTTAAAACGATCAGAAGGAAGTACAATCAAGAAACCTA ATTCGATGTTAAAGCCAAAGAGGTTGAAAAGCTCATTTTGGTTGAACTTC AGACAAAAAAAAGTTTAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATCCCACTAAA TACGAAAAAATTTGTGAATGGTCTAACTTGCGAACTTTTCTGGTCGCTAA AATTTCTGACATTAAGGTAATAAGGTAATAATAATAATAATAATAATAAT GCGTTATCAATATTATCAATACCCATGGACAAAACATCCTGATTTCTTCC CCATGGACAAACAAGGACCCTTCTCCAACCCCTGGACAAATGACACGACC GACCCATGGACATTCTCTCCAACAGTCAGGTCTCCCCCATGGACAACACA TATGTTCTCTCCCCCATGGACAACATGTCCTCTGCAACATGTCCTCGGGT CTAAGGTCTCCAGAGGTCTCCCCATGGACAACCATGTCCTCATGTTCTCC CCATGGACATATCACCCAACACCCCTAGGACAAATTAGTCTAATTCAACC CATGGACAGCAAAAAATATACCCTTGGACAAATGGTATTTACCCCCTGGA CAAATGATATCTACCCCTTGGACAATTGTTTTCTACCCCATGGACAAAGC GAGTCATGAACCCCCTGGACATTATATCCTCCACCCCCCATGTACGGACT TTTTCTGGAAGAGCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040486XLOC_040486Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064552-exon-scaffold_419-1575043694:5767..6123TCONS_00064552-exon-scaffold_419-1575043694:5767..6123Clytia hemisphaericaexon
TCONS_00064552-exon-scaffold_419-1575043694:207..366TCONS_00064552-exon-scaffold_419-1575043694:207..366Clytia hemisphaericaexon
TCONS_00064552-exon-scaffold_419-1510915933:5767..6123TCONS_00064552-exon-scaffold_419-1510915933:5767..6123Clytia hemisphaericaexon
TCONS_00064552-exon-scaffold_419-1510915933:207..366TCONS_00064552-exon-scaffold_419-1510915933:207..366Clytia hemisphaericaexon
TCONS_00064552-exon-scaffold_419-1491911889:5767..6123TCONS_00064552-exon-scaffold_419-1491911889:5767..6123Clytia hemisphaericaexon
TCONS_00064552-exon-scaffold_419-1491911889:207..366TCONS_00064552-exon-scaffold_419-1491911889:207..366Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:207..6123 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (0.95178 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.627059 0.95178 0.922152 0.287675 0 0.343765 0 0 0.844798 0.255495 0.156773 0.335548 0.594524 0 0 0 0 0.141426 0.175706 0 0.243437 0 0 0.387777 0.598879 0.598152 0 0.192354 0.33368
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500Sequence
Match NameE-valueIdentityDescription
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