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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064544 ID=TCONS_00064544|Name=TCONS_00064544|organism=Clytia hemisphaerica|type=transcript|length=360bp
aaaaaatccacGTTTTTGTTGGATTAATTGTTTGGTATTGGTggaataat
tcaaaaaataaaacaaaatagatATAATATAATCTGACTGCagtaaaaaa
atgaaagaattatcATTGACACCTGATTCGTTGCTAGATGGTGAAGATGA
CATTACGTCACTGGCAGACGCCGACATCGGAGTTGATCGTACTACGCAGA
AACGTCGATATAGCCGACTGTCGGATGGTTATGAACGTTTAAAGTCAGTT
TTACCAACCGTCAAAGATAAACGTCGTGTATCAAAAGCACGAATATTAGA
TGAAGCTATCAATTACATTCAAAGGTTGGAATCGATCACGAGTGTACTCA
AACGAGAACA Run BLAST on NCBI transcript from alignment at scaffold_419:132654..135575+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064544 ID=TCONS_00064544|Name=TCONS_00064544|organism=Clytia hemisphaerica|type=transcript|length=2922bp|location=Sequence derived from alignment at scaffold_419:132654..135575+ (Clytia hemisphaerica)
aaaaaatccacGTTTTTGTTGGATTAATTGTTTGGTATTGGTggaataat
tcaaaaaataaaacaaaatagatATAATATAATCTGACTGCagtaaaaaa
atgaaagaattatcATTGACACCTGATTCGTTGCTAGGTAAGTAAAATAA
CAACttatattttttgtacaatgtATACGATTTCTAATGACCAACTGCGC
TAAACTAAACTATAAGTTTAGAATATCACAGATTGGCCTCAATATCCAAC
CTGTCAGAGCATATATTACATAAAGCCTGGGATagacggggacgaggttg
gatGACTACCTAATGGAACAATTTTTCGACACagtacatttaaaaaaatg
acgaCTGGCGGAAGatgaactttttttgaaaaacaaaaagaaattaaaat
gaagTAGTAGCGTAGTCACCAGacttgtaaatttttaatgtcTGATCAGA
AATAACTTGATTATATTTGACCATCAAATTCCTTCTTTGTGTTTTGTCAA
ACGATATTATGATACTGCAGGCGCGATAAGcagcttttttacttttttac
ttcttttactatatttatttatttttactcCTGTTGTTACACGAGATCAG
ATCAGTAGACATGGAGTATTTCATCTACTGTATTGTTCTTTTGATAAGTT
TCGTTTTAACTTTCTTTCAATAACCATTTTCAGGTGTAATATACTGACCT
TGTACTGACTAACTCTTTTTCTAATCCTTTTCCtgtatttcaaagaaaaa
gtaaaaaaaaaattataatttaaaaagttttagatGGATTAATTTCAATC
TACTTTTTGTTACTACTATGAANattatcatttaaaaaagttttagatGG
ATTAATTTCAATCTACTTTTTGTTACTAATATGAAGCACTAATCATCATT
GAAATATTAGTCAATCTTAGTTGTTTTGACATGTTGCAATTGATATCTTT
TTTGGTGGTATTATGGATTTTGAATTAATGATACCTTTTGgtaaatgatt
ttgttttacTTCTGTTTCTCTTTACTCTTCTTTTAATTTGCAATTTTCAC
ACCCAAGAAATAAAAAACACCGGCATTATTCTCAACGTCACTTTTTCAGG
TAAAGTGACTGATTTAAGCCATCATAGGCAACACAAGTGAATATcgtaaa
aaatatattgtttttattgttttcctTTCCCCGAAGCTTTTGATTGTTCA
AGCGCCGAAATTCttttgtaatgtcacgtgacctaggtcggatttcctac
ctaaccacggcacacttttcagagTTTCCACTGTAAGAAAGTCTCCCAAG
AGGTGTATTTAGTCAAAAATAGGCTCATGGCATGCGTGGATGGTAATGGT
TGGTTTTTATGCCTTCCCAAGTACAacagaaagtaaaaaatatccGCACC
ATGCCCTCCCCCTGAAAGATACGAGAGTATATAGAGGTATATATAAAAGC
TTTTTTTGACTccgaaaaaattttaaaaaccctGATGCTGCTCTTTCTAT
ATTATATAAGCAATGGTGTTTTGGAAGGATGtacttgattgaagaaaaac
aaCTCAATAATAACATTTCAAAACTGAacgatttttttttatgttaacTG
GACATTTTTTAGGCTGTTTAGagtactttttgatttttttgatatcGGAA
TTTTTGTTATGTCTTACGTATGTGGATCGTGATACAAAGGCTCAATTTAC
AAATCAACCCCATGAGTCCTTTAATTCCAGATTTTTAAATTTCCCGATCT
TTGATATAGAAAAAAACATCCTTTTGACAAGTATTAATATATTAAACGAA
AGATGAAGAGAAAAATGCTTATATTAGATGCCTTAGAAAAAAAGGTAGtc
ttatttcatttattttgatCGTATTTTTCCCATCTCTGCCAGAAAGTTCT
AAAATACTACACGCACGGCCCTTTCCCAAAAGCTGTACCAACGTCAACAC
AGTATATTGTCTTATTTGTGCATTCAGAAAGTTCCAAATAGACTTCTCTT
AACATTTTCTGATCTCAGCGTGACAGCAGTTTTCTcaacgaaaattgaaa
atacttaAAAGGGGGTAAAGCTGGTAAAAACACTTGCCTTATATACTCTT
TTGGTTTTAAAAGAGCAACAAAAGGTCGATAAATCATGGTGTGACAATtg
aaagttttcaagttttcatTTTCGTGGATACTACACTATGAAAACACATT
GAAATGTTGAGCtttagaaaaaacttttgttacAGACAAGGTAGATAGAT
TATTGACAAATAGTTGTTGATATATACCAAACTCTTTTTTCGCGGAAAAG
ACTATGCAAAGTACGCGCCAAGTTATGCGCTTTTAAGTTTTTAGAGTACG
GTACATGCTATGTTTTCAGGTGCAAACGCAAATTTTGTACAATAATAACG
CATCcataatgtctttcaaatcaCACTTACTATTGCAACGAAAACCTTTG
CTCTCTAGGGTGCGAATTATTTTTAATGGCTTAAccaaaaacacaacaaa
aatcgGACCAAAATTAGTTTTACAGTTAACATCGTTGCTTCGAGGCAAGA
TTTACATTGACACTACTTGGAAACGTTTGACCTGttcaaattttactttt
aaatacCAATCCACTTTTCTATTTAGATGGTGAAGATGACATTACGTCAC
TGGCAGACGCCGACATCGGAGTTGATCGTACTACGCAGAAACGTCGATAT
AGCCGACTGTCGGATGGTTATGAACGTTTAAAGTCAGTTTTACCAACCGT
CAAAGATAAACGTCGTGTATCAAAAGCACGAATATTAGATGAAGCTATCA
ATTACATTCAAAGGTTGGAATCGATCACGAGTGTACTCAAACGAGAACAC
GGTATGNTTAGATGAAGCTATCAATTACATTCAAAGGTTGGAATCGATCA
CGAGTGTACTCAAACGAGAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064544-exon-scaffold_419-1491911889:132654..132790 | TCONS_00064544-exon-scaffold_419-1491911889:132654..132790 | Clytia hemisphaerica | exon |
| TCONS_00064544-exon-scaffold_419-1510915933:132654..132790 | TCONS_00064544-exon-scaffold_419-1510915933:132654..132790 | Clytia hemisphaerica | exon |
| TCONS_00064544-exon-scaffold_419-1575043694:132654..132790 | TCONS_00064544-exon-scaffold_419-1575043694:132654..132790 | Clytia hemisphaerica | exon |
| TCONS_00064544-exon-scaffold_419-1491911889:135280..135458 | TCONS_00064544-exon-scaffold_419-1491911889:135280..135458 | Clytia hemisphaerica | exon |
| TCONS_00064544-exon-scaffold_419-1510915933:135280..135458 | TCONS_00064544-exon-scaffold_419-1510915933:135280..135458 | Clytia hemisphaerica | exon |
| TCONS_00064544-exon-scaffold_419-1575043694:135280..135458 | TCONS_00064544-exon-scaffold_419-1575043694:135280..135458 | Clytia hemisphaerica | exon |
| TCONS_00064544-exon-scaffold_419-1491911889:135532..135575 | TCONS_00064544-exon-scaffold_419-1491911889:135532..135575 | Clytia hemisphaerica | exon |
| TCONS_00064544-exon-scaffold_419-1510915933:135532..135575 | TCONS_00064544-exon-scaffold_419-1510915933:135532..135575 | Clytia hemisphaerica | exon |
| TCONS_00064544-exon-scaffold_419-1575043694:135532..135575 | TCONS_00064544-exon-scaffold_419-1575043694:135532..135575 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_419 | supercontig | scaffold_419:132654..135575 + |
Blast
The following BLAST results are available for this feature:
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