TCONS_00064604 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064604
Unique NameTCONS_00064604
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length804

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064604 ID=TCONS_00064604|Name=TCONS_00064604|organism=Clytia hemisphaerica|type=transcript|length=804bp
GCTAAAGATGGGTTAATCGAATTTTATTATgtcaatttttcagattttcg
ttGATCTGCCGAGTTTACAAGGTGGAAATGAATAGAACAGTGTTAAGTTT
TAAATTATAATCTCACATTAACCATGTATATATGCgtaaatacaaaaaca
aaactaatACAAATAATTTAGTATTTATTAAATAAAAATCTGAATGCATC
TAGAAGCATTTTCTGTGGACGATGGATGGACCAGATTCGTCGTATTCTTG
TTTGGAGATCCACATCTGTTGGAAGGTGGAGAGTGAGGCCAAGATGGATC
CTCCGATCCAGACGGAGTATTTTCTTTCTGGTGGAGCGATAATCTTGATT
TTCATGGTTGGTGGAGCAAGGGCAGAGATTTCCTTTTGCATACGGTCAGC
AATACCTGGGAACATGGTCGTTCCTCCAGACAAGACGGTGTTGGCATACA
AGTCCTTACGGATGTCGACGTCACATTTCATGATGGAGTTGTAGGTGGTT
TCGTGGATACCAGCAGATTCCATACCAATGAAGGCGGGTTGGAAGAGGGT
TTCTGGGCATCGGAATCGTTCGTTTCCAATGGTGATGACCTGTCCATCAG
GCAATTCGTAGGATTTCTCCAAACTAGAGCTTGATGCAGCAGTTTGCATT
TCCTGTTCAAAGTCCAAGGCGACANGTTGGCATACAAATCTTTACGGATG
TCAACATCGCATTTCATGATGGAGTTGTAGGTGGTTTCGTGGATACCAGC
AGATTCCATACCAATGAAGGCAGGTTGGAAGAGGGTTTCTGGGCATCGGA
ATCG
Run BLAST on NCBI

protein sequence of TCONS_00064604-protein

>TCONS_00064604-protein ID=TCONS_00064604-protein|Name=TCONS_00064604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MQTAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPAFIGMESAGIHE
TTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEISALAPPTMK
IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Run BLAST on NCBI

transcript from alignment at scaffold_419:152861..153664

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064604 ID=TCONS_00064604|Name=TCONS_00064604|organism=Clytia hemisphaerica|type=transcript|length=804bp|location=Sequence derived from alignment at scaffold_419:152861..153664 (Clytia hemisphaerica)
CGATTCCGATGCCCAGAAACCCTCTTCCAACCTGCCTTCATTGGTATGGA
ATCTGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGCGATG
TTGACATCCGTAAAGATTTGTATGCCAACNTGTCGCCTTGGACTTTGAAC
AGGAAATGCAAACTGCTGCATCAAGCTCTAGTTTGGAGAAATCCTACGAA
TTGCCTGATGGACAGGTCATCACCATTGGAAACGAACGATTCCGATGCCC
AGAAACCCTCTTCCAACCCGCCTTCATTGGTATGGAATCTGCTGGTATCC
ACGAAACCACCTACAACTCCATCATGAAATGTGACGTCGACATCCGTAAG
GACTTGTATGCCAACACCGTCTTGTCTGGAGGAACGACCATGTTCCCAGG
TATTGCTGACCGTATGCAAAAGGAAATCTCTGCCCTTGCTCCACCAACCA
TGAAAATCAAGATTATCGCTCCACCAGAAAGAAAATACTCCGTCTGGATC
GGAGGATCCATCTTGGCCTCACTCTCCACCTTCCAACAGATGTGGATCTC
CAAACAAGAATACGACGAATCTGGTCCATCCATCGTCCACAGAAAATGCT
TCTAGATGCATTCAGATTTTTATTTAATAAATACTAAATTATTTGTatta
gttttgtttttgtatttacGCATATATACATGGTTAATGTGAGATTATAA
TTTAAAACTTAACACTGTTCTATTCATTTCCACCTTGTAAACTCGGCAGA
TCaacgaaaatctgaaaaattgacATAATAAAATTCGATTAACCCATCTT
TAGC

Coding sequence (CDS) from alignment at scaffold_419:152861..153664

>TCONS_00064604 ID=TCONS_00064604|Name=TCONS_00064604|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_419:152861..153664 (Clytia hemisphaerica)
ATGCAAACTGCTGCATCAAGCTCTAGTTTGGAGAAATCCTACGAATTGCC
TGATGGACAGGTCATCACCATTGGAAACGAACGATTCCGATGCCCAGAAA
CCCTCTTCCAACCCGCCTTCATTGGTATGGAATCTGCTGGTATCCACGAA
ACCACCTACAACTCCATCATGAAATGTGACGTCGACATCCGTAAGGACTT
GTATGCCAACACCGTCTTGTCTGGAGGAACGACCATGTTCCCAGGTATTG
CTGACCGTATGCAAAAGGAAATCTCTGCCCTTGCTCCACCAACCATGAAA
ATCAAGATTATCGCTCCACCAGAAAGAAAATACTCCGTCTGGATCGGAGG
ATCCATCTTGGCCTCACTCTCCACCTTCCAACAGATGTGGATCTCCAAAC
AAGAATACGACGAATCTGGTCCATCCATCGTCCACAGAAAATGCTTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040513XLOC_040513Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064604-proteinTCONS_00064604-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064604-exon-scaffold_419-1491911889:152861..153664TCONS_00064604-exon-scaffold_419-1491911889:152861..153664Clytia hemisphaericaexon
TCONS_00064604-exon-scaffold_419-1510915933:152861..153664TCONS_00064604-exon-scaffold_419-1510915933:152861..153664Clytia hemisphaericaexon
TCONS_00064604-exon-scaffold_419-1575043694:152861..153664TCONS_00064604-exon-scaffold_419-1575043694:152861..153664Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:152861..153664 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4010.49	4053.56	4419.53	4514.57	321.216	271.902	646.089	679.377	790.323	989.368	804.237	653.329	1625.12	1844.46	1424.91	1563.72	1510.05	1794.75	3639.38	2619.48	759.884	809.653	2079.88	1796.1	487.821	456.748	822.198	1095.89	2640.63	2864.3
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004000Actin
IPR004001Actin_CS
Blast
[Close]
BLAST of TCONS_00064604 vs. Swiss-Prot (Human)
Match: ACTC (Actin, alpha cardiac muscle 1 OS=Homo sapiens GN=ACTC1 PE=1 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 1.583e-105
Identity = 148/157 (94.27%), Postives = 153/157 (97.45%), Query Frame = -3 
Query:  203 VALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 673
            VALDFE EM TAASSSSLEKSYELPDGQVITIGNERFRCPETLFQP+FIGMESAGIHETTYNSIMKCD+DIRKDLYAN VLSGGTTM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE+GPSIVHRKCF
Sbjct:  221 VALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377

HSP 2 Score: 95.9005 bits (237), Expect = 9.365e-23
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = -1 
Query:  676 RFRCPETLFQPAFIGMESAGIHETTYNSIMKCDVDIRKDLYAN 804
            RFRCPETLFQP+FIGMESAGIHETTYNSIMKCD+DIRKDLYAN
Sbjct:  256 RFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYAN 298
The following BLAST results are available for this feature:
BLAST of TCONS_00064604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACTC1.583e-10594.27Actin, alpha cardiac muscle 1 OS=Homo sapiens GN=A... [more]
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